A cytometric approach to follow variation and dynamics of the salivary microbiota.

Microbial flow cytometry is an established fast and economic technique for complex ecosystem studies and enables visualization of rapidly changing community structures by measuring characteristics of single microbial cells. Cytometric evaluation routines are available such as flowCyBar which are useful for automatic data processing. Here, a cytometric workflow was established which allows to routinely analyze salivary microbiomes on the example of ten oral healthy subjects. First, saliva was collected within a 3-month period, cytometrically analyzed and the evolution of the microbiomes followed as well as the calculation of their intra- and inter-subject similarity. Second, the respective microbiomes were stressed by exposition to high sugar or acid concentrations and immediate changes were recorded. Third, bactericide solutions were tested on their impact on the microbiomes. In all three set ups huge intra-individual variations in cytometric community structures were found to be largely absent, even under stress, while inter-individual diversity was obvious. The bacterial cell counts of saliva samples were found to vary between 3.0×107 and 6.2×108 cells per sample and subject in undisturbed environments. The application of the two bactericides did not cause noteworthy diversity changes but the loss in cell numbers by about 50% was high after treatment. Illumina® sequencing of whole microbiomes or sorted sub-microbiomes revealed typical phyla such as Firmicutes, Proteobacteria, Actinobacteria, Bacteroidetes and Fusobacteria. This approach is useful for fast monitoring of individual salivary microbiomes and automatic calculation of intra- and inter-individual dynamic changes and variability and opens insight into ecological principles leading to their sustainment in their individual environment.

High-resolution microbiota flow cytometry reveals dynamic colitis-associated changes in fecal bacterial composition.

Using high-resolution flow cytometry of bacterial shape (forward scatter) and DNA content (DAPI staining), we detected dramatic differences in the fecal microbiota composition during murine colitis that were validated using 16S rDNA sequencing. This innovative method provides a fast and inexpensive tool to interrogate the microbiota on the single-cell level.

Species-sorting and mass-transfer paradigms control managed natural metacommunities.

A complex microbial system consisting of six different interconnected localities was thoroughly investigated at full scale for over a year. The metacommunity concept originating from macro-ecology was used to uncover mechanisms of community assembly by observing microbial interrelationships in and between the different localities via correlation and network analysis. The individual-based observation approach was applied using high-throughput microbial community cytometry in addition to next generation sequencing. We found robust α-diversity values for each of the six localities and high ß-diversity values despite directed connectivity between localities, classifying for endpoint assembly of organisms in each locality. Endpoint characteristics were based on subcommunities with high cell numbers whereas those with lower cell numbers were involved in dispersal. Perturbation caused abiotic parameters to alter local community assembly with especially the rare cells announcing community restructuration processes. The mass-effect paradigm as part of the metacommunity concept was identified by an increase in interlocality biotic correlations under perturbation which, however, did not unbalance the predominant species-sorting paradigm in the studied full scale metacommunity. Data as generated in this study might contribute to the development of individual-based models for controlling managed multispecies natural systems in future.

Directional roll-up of nanomembranes mediated by wrinkling.

We investigate the relaxation of rectangular wrinkled thin films intrinsically containing an initial strain gradient. A preferential rolling direction, depending on wrinkle geometry and strain gradient, is theoretically predicted and experimentally verified. In contrast to typical rolled-up nanomembranes, which bend perpendicular to the longer edge of rectangular patterns, we find a regime where rolling parallel to the longer edge of the wrinkled film is favorable. A nonuniform radius of the rolled-up film is well reproduced by elasticity theory and simulations of the film relaxation using a finite element method.

Superconducting switching due to a triplet component in the Pb/Cu/Ni/Cu/Co2Cr1 -x Fe x Al y spin-valve structure.

We report the superconducting properties of the Co2Cr1 -x Fe x Al y /Cu/Ni/Cu/Pb spin-valve structure the magnetic part of which comprises the Heusler alloy layer HA = Co2Cr1 -x Fe x Al y with a high degree of spin polarization (DSP) of the conduction band and a Ni layer of variable thickness. The separation between the superconducting transition curves measured for the parallel (α = 0°) and perpendicular (α = 90°) orientation of the magnetization of the HA and the Ni layers reaches up to 0.5 K (α is the angle between the magnetization of two ferromagnetic layers). For all studied samples the dependence of the superconducting transition temperature T c on α demonstrates a deep minimum in the vicinity of the perpendicular configuration of the magnetizations. This suggests that the observed minimum and the corresponding full switching effect of the spin valve is caused by the long-range triplet component of the superconducting condensate in the multilayer. Such a large effect can be attributed to a half-metallic nature of the HA layer, which in the orthogonal configuration efficiently draws off the spin-polarized Cooper pairs from the space between the HA and Ni layers. Our results indicate a significant potential of the concept of a superconducting spin-valve multilayer comprising a half-metallic ferromagnet, recently proposed by A. Singh et al., Phys. Rev. X 2015, 5, 021019, in achieving large values of the switching effect.

Increasing the performance of a superconducting spin valve using a Heusler alloy.

We have studied superconducting properties of spin-valve thin-layer heterostructures CoO x /F1/Cu/F2/Cu/Pb in which the ferromagnetic F1 layer was made of Permalloy while for the F2 layer we have taken a specially prepared film of the Heusler alloy Co2Cr1-x Fe x Al with a small degree of spin polarization of the conduction band. The heterostructures demonstrate a significant superconducting spin-valve effect, i.e., a complete switching on and off of the superconducting current flowing through the system by manipulating the mutual orientations of the magnetization of the F1 and F2 layers. The magnitude of the effect is doubled in comparison with the previously studied analogous multilayers with the F2 layer made of the strong ferromagnet Fe. Theoretical analysis shows that a drastic enhancement of the switching effect is due to a smaller exchange field in the heterostructure coming from the Heusler film as compared to Fe. This enables to approach an almost ideal theoretical magnitude of the switching in the Heusler-based multilayer with a F2 layer thickness of ca. 1 nm.