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1.

RNA polymerase drives ribonucleotide excision DNA repair in E. coli.

Hao, Zhitai; Gowder, Manjunath; Proshkin, Sergey; Bharati, Binod K; Epshtein, Vitaly; Svetlov, Vladimir; Shamovsky, Ilya; Nudler, Evgeny.

Cell ; 186(11): 2425-2437.e21, 2023 05 25.

Artículo en Inglés | MEDLINE | ID: mdl-37196657

2.

Persistence of backtracking by human RNA polymerase II.

Yang, Kevin B; Rasouly, Aviram; Epshtein, Vitaly; Martinez, Criseyda; Nguyen, Thao; Shamovsky, Ilya; Nudler, Evgeny.

Mol Cell ; 84(5): 897-909.e4, 2024 Mar 07.

Artículo en Inglés | MEDLINE | ID: mdl-38340716

3.

sRNA-Mediated Control of Transcription Termination in E. coli.

Sedlyarova, Nadezda; Shamovsky, Ilya; Bharati, Binod K; Epshtein, Vitaly; Chen, Jiandong; Gottesman, Susan; Schroeder, Renée; Nudler, Evgeny.

Cell ; 167(1): 111-121.e13, 2016 Sep 22.

Artículo en Inglés | MEDLINE | ID: mdl-27662085

4.

High-resolution landscape of an antibiotic binding site.

Yang, Kevin B; Cameranesi, Maria; Gowder, Manjunath; Martinez, Criseyda; Shamovsky, Yosef; Epshtein, Vitaliy; Hao, Zhitai; Nguyen, Thao; Nirenstein, Eric; Shamovsky, Ilya; Rasouly, Aviram; Nudler, Evgeny.

Nature ; 622(7981): 180-187, 2023 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-37648864

5.

Bacterial nitric oxide extends the lifespan of C. elegans.

Gusarov, Ivan; Gautier, Laurent; Smolentseva, Olga; Shamovsky, Ilya; Eremina, Svetlana; Mironov, Alexander; Nudler, Evgeny.

Cell ; 152(4): 818-30, 2013 Feb 14.

Artículo en Inglés | MEDLINE | ID: mdl-23415229

6.

Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencing.

Jee, Justin; Rasouly, Aviram; Shamovsky, Ilya; Akivis, Yonatan; Steinman, Susan R; Mishra, Bud; Nudler, Evgeny.

Nature ; 534(7609): 693-6, 2016 06 30.

Artículo en Inglés | MEDLINE | ID: mdl-27338792

7.

Paf1C regulates RNA polymerase II progression by modulating elongation rate.

Hou, Liming; Wang, Yating; Liu, Yu; Zhang, Nan; Shamovsky, Ilya; Nudler, Evgeny; Tian, Bin; Dynlacht, Brian David.

Proc Natl Acad Sci U S A ; 116(29): 14583-14592, 2019 07 16.

Artículo en Inglés | MEDLINE | ID: mdl-31249142

8.

iRAPs curb antisense transcription in E. coli.

Magán, Andrés; Amman, Fabian; El-Isa, Fatinah; Hartl, Natascha; Shamovsky, Ilya; Nudler, Evgeny; Schroeder, Renée; Sedlyarova, Nadezda.

Nucleic Acids Res ; 47(20): 10894-10905, 2019 11 18.

Artículo en Inglés | MEDLINE | ID: mdl-31535128

9.

Modular RNA heats up.

Shamovsky, Ilya; Nudler, Evgeny.

Mol Cell ; 29(4): 415-7, 2008 Feb 29.

Artículo en Inglés | MEDLINE | ID: mdl-18313380

10.

General transcription factor from Escherichia coli with a distinct mechanism of action.

Vasilyev, Nikita; Liu, Mengjie M J; Epshtein, Vitaly; Shamovsky, Ilya; Nudler, Evgeny.

Nat Struct Mol Biol ; 31(1): 141-149, 2024 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-38177674

11.

Persistence of backtracking by human RNA polymerase II.

Yang, Kevin B; Rasouly, Aviram; Epshtein, Vitaly; Martinez, Criseyda; Nguyen, Thao; Shamovsky, Ilya; Nudler, Evgeny.

bioRxiv ; 2023 Dec 19.

Artículo en Inglés | MEDLINE | ID: mdl-38168453

12.

RNA-mediated response to heat shock in mammalian cells.

Shamovsky, Ilya; Ivannikov, Maxim; Kandel, Eugene S; Gershon, David; Nudler, Evgeny.

Nature ; 440(7083): 556-60, 2006 Mar 23.

Artículo en Inglés | MEDLINE | ID: mdl-16554823

13.

Dietary thiols accelerate aging of C. elegans.

Gusarov, Ivan; Shamovsky, Ilya; Pani, Bibhusita; Gautier, Laurent; Eremina, Svetlana; Katkova-Zhukotskaya, Olga; Mironov, Alexander; Makarov, Alexander Ð; Nudler, Evgeny.

Nat Commun ; 12(1): 4336, 2021 07 15.

Artículo en Inglés | MEDLINE | ID: mdl-34267196

14.

Analysing the fitness cost of antibiotic resistance to identify targets for combination antimicrobials.

Rasouly, Aviram; Shamovsky, Yosef; Epshtein, Vitaly; Tam, Kayan; Vasilyev, Nikita; Hao, Zhitai; Quarta, Giulio; Pani, Bibhusita; Li, Lingting; Vallin, Carmen; Shamovsky, Ilya; Krishnamurthy, Shankarling; Shtilerman, Aaron; Vantine, Samantha; Torres, Victor J; Nudler, Evgeny.

Nat Microbiol ; 6(11): 1410-1423, 2021 11.

Artículo en Inglés | MEDLINE | ID: mdl-34697460

15.

Inhibitors of bacterial H₂S biogenesis targeting antibiotic resistance and tolerance.

Shatalin, Konstantin; Nuthanakanti, Ashok; Kaushik, Abhishek; Shishov, Dmitry; Peselis, Alla; Shamovsky, Ilya; Pani, Bibhusita; Lechpammer, Mirna; Vasilyev, Nikita; Shatalina, Elena; Rebatchouk, Dmitri; Mironov, Alexander; Fedichev, Peter; Serganov, Alexander; Nudler, Evgeny.

Science ; 372(6547): 1169-1175, 2021 06 11.

Artículo en Inglés | MEDLINE | ID: mdl-34112687

16.

Targeting eEF1A by a Legionella pneumophila effector leads to inhibition of protein synthesis and induction of host stress response.

Shen, Xihui; Banga, Simran; Liu, Yancheng; Xu, Li; Gao, Ping; Shamovsky, Ilya; Nudler, Evgeny; Luo, Zhao-Qing.

Cell Microbiol ; 11(6): 911-26, 2009 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-19386084

17.

Isolation and characterization of the heat shock RNA 1.

Shamovsky, Ilya; Nudler, Evgeny.

Methods Mol Biol ; 540: 265-79, 2009.

Artículo en Inglés | MEDLINE | ID: mdl-19381566

18.

Transcription factor YcjW controls the emergency H₂S production in E. coli.

Luhachack, Lyly; Rasouly, Aviram; Shamovsky, Ilya; Nudler, Evgeny.

Nat Commun ; 10(1): 2868, 2019 06 28.

Artículo en Inglés | MEDLINE | ID: mdl-31253770

19.

Gene control by large noncoding RNAs.

Shamovsky, Ilya; Nudler, Evgeny.

Sci STKE ; 2006(355): pe40, 2006 Oct 03.

Artículo en Inglés | MEDLINE | ID: mdl-17018852

20.

Mechanism of biofilm-mediated stress resistance and lifespan extension in C. elegans.

Smolentseva, Olga; Gusarov, Ivan; Gautier, Laurent; Shamovsky, Ilya; DeFrancesco, Alicia S; Losick, Richard; Nudler, Evgeny.

Sci Rep ; 7(1): 7137, 2017 08 02.

Artículo en Inglés | MEDLINE | ID: mdl-28769037

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RNA polymerase drives ribonucleotide excision DNA repair in E. coli.

Persistence of backtracking by human RNA polymerase II.

sRNA-Mediated Control of Transcription Termination in E. coli.

High-resolution landscape of an antibiotic binding site.

Bacterial nitric oxide extends the lifespan of C. elegans.

Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencing.

Paf1C regulates RNA polymerase II progression by modulating elongation rate.

iRAPs curb antisense transcription in E. coli.

Modular RNA heats up.

General transcription factor from Escherichia coli with a distinct mechanism of action.

Persistence of backtracking by human RNA polymerase II.

RNA-mediated response to heat shock in mammalian cells.

Dietary thiols accelerate aging of C. elegans.

Analysing the fitness cost of antibiotic resistance to identify targets for combination antimicrobials.

Inhibitors of bacterial H₂S biogenesis targeting antibiotic resistance and tolerance.

Targeting eEF1A by a Legionella pneumophila effector leads to inhibition of protein synthesis and induction of host stress response.

Isolation and characterization of the heat shock RNA 1.

Transcription factor YcjW controls the emergency H₂S production in E. coli.

Gene control by large noncoding RNAs.

Mechanism of biofilm-mediated stress resistance and lifespan extension in C. elegans.