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1.
Nat Chem Biol ; 20(5): 605-614, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38267667

RESUMEN

In response to environmental changes, cells flexibly and rapidly alter gene expression through translational controls. In plants, the translation of NIP5;1, a boric acid diffusion facilitator, is downregulated in response to an excess amount of boric acid in the environment through upstream open reading frames (uORFs) that consist of only AUG and stop codons. However, the molecular details of how this minimum uORF controls translation of the downstream main ORF in a boric acid-dependent manner have remained unclear. Here, by combining ribosome profiling, translation complex profile sequencing, structural analysis with cryo-electron microscopy and biochemical assays, we show that the 80S ribosome assembled at AUG-stop migrates into the subsequent RNA segment, followed by downstream translation initiation, and that boric acid impedes this process by the stable confinement of eukaryotic release factor 1 on the 80S ribosome on AUG-stop. Our results provide molecular insight into translation regulation by a minimum and environment-responsive uORF.


Asunto(s)
Ácidos Bóricos , Biosíntesis de Proteínas , Ribosomas , Ribosomas/metabolismo , Ácidos Bóricos/química , Factores de Terminación de Péptidos/metabolismo , Factores de Terminación de Péptidos/química , Factores de Terminación de Péptidos/genética , Microscopía por Crioelectrón , Sistemas de Lectura Abierta , Codón de Terminación , Arabidopsis/metabolismo , Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética
2.
Plant J ; 118(6): 1889-1906, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38494830

RESUMEN

Plants have developed the ability to adjust to the day/night cycle through the expression of diel genes, which allow them to effectively respond to environmental changes and optimise their growth and development. Diel oscillations also have substantial implications in many physiological processes, including photosynthesis, floral development, and environmental stress responses. The expression of diel genes is regulated by a combination of the circadian clock and responses to environmental cues, such as light and temperature. A great deal of information is available on the transcriptional regulation of diel gene expression. However, the extent to which translational regulation is involved in controlling diel changes in expression is not yet clear. To investigate the impact of translational regulation on diel expression, we conducted Ribo-seq and RNA-seq analyses on a time-series sample of Arabidopsis shoots cultivated under a 12 h light/dark cycle. Our results showed that translational regulation is involved in about 71% of the genes exhibiting diel changes in mRNA abundance or translational activity, including clock genes, many of which are subject to both translational and transcriptional control. They also revealed that the diel expression of glycosylation and ion-transporter-related genes is mainly established through translational regulation. The expression of several diel genes likely subject to translational regulation through upstream open-reading frames was also determined.


Asunto(s)
Arabidopsis , Relojes Circadianos , Regulación de la Expresión Génica de las Plantas , Arabidopsis/genética , Arabidopsis/metabolismo , Relojes Circadianos/genética , Ribosomas/metabolismo , Ribosomas/genética , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Biosíntesis de Proteínas , Fotoperiodo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Ritmo Circadiano/genética , Perfilado de Ribosomas
3.
Plant J ; 116(2): 597-603, 2023 10.
Artículo en Inglés | MEDLINE | ID: mdl-37433661

RESUMEN

Generation of mutant populations with high genetic diversity is key for mutant screening and crop breeding. For this purpose, the single-seed descent method, in which one mutant line is established from a single mutagenized seed, is commonly used. This method ensures the independence of the mutant lines, but the size of the mutant population is limited because it is no greater than the number of fertile M1 plants. The rice mutant population size can be increased if a single mutagenized plant produces genetically independent siblings. Here, we used whole-genome resequencing to examine the inheritance of mutations from a single ethyl methanesulfonate (EMS)-mutagenized seed (M1 ) of Oryza sativa in its progeny (M2 ). We selected five tillers from each of three M1 plants. A single M2 seed was selected from each tiller, and the distributions of mutations induced by EMS were compared. Surprisingly, in most pairwise combinations of M2 siblings from the same parent, ≥85.2-97.9% of all mutations detected were not shared between the siblings. This high percentage suggests that the M2 siblings were derived from different cells of the M1 embryo and indicates that several genetically independent lines can be obtained from a single M1 plant. This approach should allow a large reduction in the number of M0 seeds needed to obtain a mutant population of a certain size in rice. Our study also suggests that multiple tillers of a rice plant originate from different cells of the embryo.


Asunto(s)
Oryza , Oryza/genética , Fitomejoramiento , Mutación , Metanosulfonato de Etilo/farmacología , Semillas/genética
4.
Plant J ; 116(2): 497-509, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37433637

RESUMEN

Plant root system architecture shows complex patterns adapting to different nutritional conditions. In Arabidopsis thaliana, root slanting is a behaviour that is observed when plants are grown on a solid agar plate vertically. However, the regulatory mechanisms of root slanting in response to nutrient conditions are not fully understood. In this study, we found that mutants of A. thaliana ribosome protein RPL13aC, which is expressed in root tips and leaves, exhibit a decreased root-slanting phenotype. Ionomic analysis revealed that rpl13ac mutants have a reduced K content in shoots but not in roots. Because K+ availability has been suggested to affect root coiling, we hypothesized that the decreased root slanting of rpl13ac mutants is caused by the decrease in K content in their shoots. Decapitating shoots or limiting K supply dramatically decreased root slanting in wild-type (WT) plants. We found that the expression of HIGH-AFFINITY K+ TRANSPORTER 5 (HAK5) significantly decreased in the roots of rpl13ac mutants. Mutants of hak5 showed decreased shoot K contents and decreased root slanting, supporting that the decreased shoot K+ accumulation results in less root slanting. K+ replenishment to the shoots of rpl13ac, hak5 mutants and K-starved WT plants recovered their root slanting significantly. These results indicate that plants adjust root slanting in response to K+ accumulation in shoots. Further analysis showed that rpl13ac mutants have abnormal thigmotropic responses, which may be responsible for their defects in root slanting. Altogether, these results revealed K+ -dependent mechanisms that affect root system architecture.

5.
J Exp Bot ; 2024 Apr 22.
Artículo en Inglés | MEDLINE | ID: mdl-38646800

RESUMEN

Bioassay with insect herbivore is a common approach to studying plant defense levels. While measuring insect growth rate as a negative indicator of plant defense levels is simple and straightforward, analyzing more detailed feeding behavior parameters of insects, such as feeding rates, leaf area consumed per feeding event, intervals between feeding events, and spatiotemporal patterns of feeding sites on leaves, is more informative. However, such observations are generally time consuming and labor-intensive. Here, we provide a semi-automated system for quantifying feeding behavior parameters of insects feeding on plant leaves. Automated photo scanners record time-course development of feeding marks on leaves. An image analysis pipeline processes the scanned images and extracts leaf area. By analyzing changes in leaf area over time, it detects insect feeding events and calculates the leaf area consumed during each feeding event, providing quantitative parameters of insects feeding behavior. In addition, it visualizes spatio-temporal changes in feeding sites, providing a measure of the complex behavior of insects on leaves. Using this analysis pipeline, we demonstrate that Arabidopsis thaliana trichomes reduce insect feeding rate, but not feeding duration or intervals between feeding events. Our image acquisition system requires only photo a scanner and a laptop computer and does not require any specialized equipment. The analysis software pipeline is provided as an ImageJ macro and R package and is available at no cost. Taken together, our work provides a scalable method for quantitative assessment of insect feeding behavior on leaves, facilitating understanding of plant defense mechanisms.

6.
Proc Natl Acad Sci U S A ; 118(22)2021 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-34035165

RESUMEN

Specialized (secondary) metabolic pathways in plants have long been considered one-way routes of leading primary metabolite precursors to bioactive end products. Conversely, endogenous degradation of such "end" products in plant tissues has been observed following environmental stimuli, including nutrition stress. Therefore, it is of general interest whether specialized metabolites can be reintegrated into primary metabolism to recover the invested resources, especially in the case of nitrogen- or sulfur-rich compounds. Here, we demonstrate that endogenous glucosinolates (GLs), a class of sulfur-rich plant metabolites, are exploited as a sulfur source by the reallocation of sulfur atoms to primary metabolites such as cysteine in Arabidopsis thaliana Tracer experiments using 34S- or deuterium-labeled GLs depicted the catabolic processing of GL breakdown products in which sulfur is mobilized from the thioglucoside group in GL molecules, potentially accompanied by the release of the sulfate group. Moreover, we reveal that beta-glucosidases BGLU28 and BGLU30 are the major myrosinases that initiate sulfur reallocation by hydrolyzing particular GL species, conferring sulfur deficiency tolerance in A. thaliana, especially during early development. The results delineate the physiological function of GL as a sulfur reservoir, in addition to their well-known functions as defense chemicals. Overall, our findings demonstrate the bidirectional interaction between primary and specialized metabolism, which enhances our understanding of the underlying metabolic mechanisms via which plants adapt to their environments.


Asunto(s)
Adaptación Fisiológica , Arabidopsis/metabolismo , Cisteína/metabolismo , Regulación de la Expresión Génica de las Plantas , Glucosinolatos/metabolismo , Azufre/metabolismo , Proteínas de Arabidopsis/metabolismo , Proteínas de Ciclo Celular/metabolismo , Celulasas/metabolismo
7.
Plant J ; 106(5): 1455-1467, 2021 06.
Artículo en Inglés | MEDLINE | ID: mdl-33772920

RESUMEN

We previously reported that ribosome stalling at AUG-stop sequences in the 5'-untranslated region plays a critical role in regulating the expression of Arabidopsis thaliana NIP5;1, which encodes a boron uptake transporter, in response to boron conditions in media. This ribosome stalling is triggered specifically by boric acid, but the mechanisms are unknown. Although upstream open reading frames (uORFs) are known in many cases to regulate translation through peptides encoded by the uORF, AUG-stop stalling does not involve any peptide synthesis. The unique feature of AUG-stops - that termination follows immediately after initiation - suggests a possible effect of boron on the translational process itself. However, the generality of AUG-stop-mediated translational regulation and the effect of boron on translation at the genome scale are not clear. Here, we conducted a ribosome profiling analysis to reveal the genome-wide regulation of translation in response to boron conditions in A. thaliana shoots. We identified hundreds of translationally regulated genes that function in various biological processes. Under high-boron conditions, transcripts with reduced translation efficiency were rich in uORFs, highlighting the importance of uORF-mediated translational regulation. We found 673 uORFs that had more frequent ribosome association. Moreover, transcripts that were translationally downregulated under high-boron conditions were rich in minimum uORFs (AUG-stops), suggesting that AUG-stops play a global role in the boron response. Metagene analysis revealed that boron increased the ribosome occupancy of stop codons, indicating that this element is involved in global translational termination processes.


Asunto(s)
Arabidopsis/genética , Boro/efectos adversos , Biosíntesis de Proteínas/efectos de los fármacos , Regiones no Traducidas 5'/genética , Arabidopsis/efectos de los fármacos , Codón/genética , Sistemas de Lectura Abierta/genética , Brotes de la Planta/efectos de los fármacos , Brotes de la Planta/genética , Ribosomas/efectos de los fármacos
8.
Plant Cell Physiol ; 63(5): 592-604, 2022 May 16.
Artículo en Inglés | MEDLINE | ID: mdl-35166349

RESUMEN

Recent accumulation of genomic and transcriptomic information has facilitated genetic studies. Increasing evidence has demonstrated that translation is an important regulatory step, and the transcriptome does not necessarily reflect the profile of functional protein production. Deep sequencing of ribosome-protected mRNA fragments (ribosome profiling or Ribo-seq) has enabled genome-wide analysis of translation. Sorghum is a C4 cereal important not only as food but also as forage and a bioenergy resource. Its resistance to harsh environments has made it an agriculturally important research subject. Yet genome-wide translational profiles in sorghum are still missing. In this study, we took advantage of Ribo-seq and identified actively translated reading frames throughout the genome. We detected translation of 4,843 main open reading frames (ORFs) annotated in the sorghum reference genome version 3.1 and revealed a number of unannotated translational events. A comparison of the transcriptome and translatome between sorghums grown under normal and sulfur-deficient conditions revealed that gene expression is modulated independently at transcript and translation levels. Our study revealed the translational landscape of sorghum's response to sulfur and provides datasets that could serve as a fundamental resource to extend genetic research on sorghum, including studies on translational regulation.


Asunto(s)
Sorghum , Sistemas de Lectura Abierta/genética , Biosíntesis de Proteínas , Ribosomas/genética , Ribosomas/metabolismo , Sorghum/genética , Azufre/metabolismo , Transcriptoma/genética
9.
Plant Physiol ; 184(1): 428-442, 2020 09.
Artículo en Inglés | MEDLINE | ID: mdl-32601148

RESUMEN

Mg2+ is among the most abundant divalent cations in living cells. In plants, investigations on magnesium (Mg) homeostasis are restricted to the functional characterization of Mg2+ transporters. Here, we demonstrate that the splicing factors SUPPRESSORS OF MEC-8 AND UNC-52 1 (SMU1) and SMU2 mediate Mg homeostasis in Arabidopsis (Arabidopsis thaliana). A low-Mg sensitive Arabidopsis mutant was isolated, and the causal gene was identified as SMU1 Disruption of SMU2, a protein that can form a complex with SMU1, resulted in a similar low-Mg sensitive phenotype. In both mutants, an Mg2+ transporter gene, Mitochondrial RNA Splicing 2 (MRS2-7), showed altered splicing patterns. Genetic evidence indicated that MRS2-7 functions in the same pathway as SMU1 and SMU2 for low-Mg adaptation. In contrast with previous results showing that the SMU1-SMU2 complex is the active form in RNA splicing, MRS2-7 splicing was promoted in the smu2 mutant overexpressing SMU1, indicating that complex formation is not a prerequisite for the splicing. We found here that formation of the SMU1-SMU2 complex is an essential step for their compartmentation in the nuclear speckles, a type of nuclear body enriched with proteins that participate in various aspects of RNA metabolism. Taken together, our study reveals the involvement of the SMU splicing factors in plant Mg homeostasis and provides evidence that complex formation is required for their intranuclear compartmentation.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Magnesio/metabolismo , Empalme Alternativo/genética , Empalme Alternativo/fisiología , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Proteínas de Transporte de Catión/genética , Proteínas de Transporte de Catión/metabolismo , Regulación de la Expresión Génica de las Plantas/genética , Regulación de la Expresión Génica de las Plantas/fisiología , Raíces de Plantas/genética , Raíces de Plantas/metabolismo , Empalme del ARN/genética , Empalme del ARN/fisiología
10.
Analyst ; 146(5): 1604-1611, 2021 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-33624642

RESUMEN

The extraction of cellular contents from plant cells covered with cell walls remains a challenge, as it is physically hindered by the cell wall. We present a new microfluidic approach that leverages an intense pulsed electric field for permeabilizing the cell wall and a focused DC electric field for extracting the cellular contents selectively from a few targeted cells in a cluster of intact plant cells. We coupled the approach with on-chip fluorescence quantification of extracted molecules leveraging isotachophoresis as well as off-chip reverse transcription-quantitative polymerase chain reaction detecting extracted mRNA molecules. Our approach offers a workflow of about 5 min, isolating a cluster of intact plant cells, permeabilizing the cell wall, selectively extracting cytosolic molecules from a few targeted cells in the cluster, and outputting them to off-chip analyses without any enzymatic reactions. We anticipate that this approach will create a new opportunity to explore plant biology through less biased data realized by the rapid extraction of molecules from intact plant clusters.


Asunto(s)
Isotacoforesis , Pared Celular , Microfluídica , Análisis de Secuencia por Matrices de Oligonucleótidos , Plantas
11.
Physiol Plant ; 171(4): 703-713, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33090485

RESUMEN

BOR1 is an efflux transporter of boron (B), responsible for loading B into the xylem. It has been reported that nitrate (NO3 - ) concentrations significantly influence B concentrations in leaves and BOR1 mRNA accumulation in roots. Here, to unravel the interactive effects of B and NO3 - on plant growth and the function of BOR1 under the combination of B and NO3 - , seedling growth was analyzed in Col-0 and bor1 mutants. The growth of bor1 mutants was negatively affected by high NO3 - but neither by potassium chloride (KCl) nor ammonium (NH4 + ) under low B conditions, suggesting the involvement of BOR1 in growth under high NO3 - . Mutants of bor2 and bor4 did not exhibit such growth responses, suggesting that this effect was specific to BOR1 among the BORs tested. Under low B conditions, loss of the BOR1 function led to a more significant decrease in B concentrations in the presence of high NO3 - compared to normal NO3 - . Additionally, grafting experiments demonstrated that these effects of NO3 - occurred when BOR1 is absent in roots. High NO3 - treatment elevated BOR1 mRNA accumulation while the BOR1 protein accumulation was downregulated. These apparent opposite responses indicated that the transcriptional and (post-)translational regulations follow different patterns. Our work provides evidence of a novel regulation of BOR1 and another B transport system by both B and NO3 - in an interactive manner.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Antiportadores , Arabidopsis/genética , Arabidopsis/metabolismo , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Boro , Nitratos , Raíces de Plantas/genética , Raíces de Plantas/metabolismo
12.
Plant Cell ; 28(11): 2830-2849, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-27760805

RESUMEN

Upstream open reading frames (uORFs) are often translated ahead of the main ORF of a gene and regulate gene expression, sometimes in a condition-dependent manner, but such a role for the minimum uORF (hereafter referred to as AUG-stop) in living organisms is currently unclear. Here, we show that AUG-stop plays an important role in the boron (B)-dependent regulation of NIP5;1, encoding a boric acid channel required for normal growth under low B conditions in Arabidopsis thaliana High B enhanced ribosome stalling at AUG-stop, which was accompanied by the suppression of translation and mRNA degradation. This mRNA degradation was promoted by an upstream conserved sequence present near the 5'-edge of the stalled ribosome. Once ribosomes translate a uORF, reinitiation of translation must take place in order for the downstream ORF to be translated. Our results suggest that reinitiation of translation at the downstream NIP5;1 ORF is enhanced under low B conditions. A genome-wide analysis identified two additional B-responsive genes, SKU5 and the transcription factor gene ABS/NGAL1, which were regulated by B-dependent ribosome stalling through AUG-stop. This regulation was reproduced in both plant and animal transient expression and cell-free translation systems. These findings suggest that B-dependent AUG-stop-mediated regulation is common in eukaryotes.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Boro/metabolismo , Regulación de la Expresión Génica de las Plantas , Sistemas de Lectura Abierta/genética , Estabilidad del ARN/fisiología , Ribosomas/metabolismo , Acuaporinas/genética , Acuaporinas/metabolismo , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Glicoproteínas de Membrana/genética , Glicoproteínas de Membrana/metabolismo , Sistemas de Lectura Abierta/fisiología , Estabilidad del ARN/genética , Ribosomas/genética , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
13.
J Exp Bot ; 67(8): 2401-11, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26889009

RESUMEN

Root growth in plants is achieved through the co-ordination of cell division and expansion. In higher plants, the radial structure of the roots is formed during embryogenesis and maintained thereafter throughout development. Here we show that the tetratricopeptide repeat domain protein TPR5 is necessary for maintaining radial structure and growth rates in Arabidopsis thaliana roots. We isolated an A. thaliana mutant with reduced root growth and determined that TPR5 was the gene responsible for the phenotype. The root growth rate of the tpr5-1 mutant was reduced to ~60% of that in wild-type plants. The radial structure was disturbed by the occurrence of occasional extra periclinal cell divisions. While the number of meristematic cells was reduced in the tpr5 mutants, the cell length in the mature portion of the root did not differ from that of the wild type, suggesting that TPR5 is required for proper cell division but dispensable for cell elongation. Expression of the TPR5-GFP fusion protein driven by the TPR5 promoter displayed fluorescence in the cytoplasm of root meristems, but not in mature root regions. DNA staining revealed that frequencies of micronuclei were increased in root meristems of tpr5 mutants. From this study, we concluded that TPR5 is involved in preventing the formation of micronuclei and is necessary for both the activity and directionality of cell division in root meristems.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/citología , Arabidopsis/metabolismo , División Celular , Meristema/citología , Meristema/metabolismo , Canales de Potencial de Receptor Transitorio/metabolismo , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Proteínas de Arabidopsis/genética , Secuencia de Bases , Recuento de Células , Muerte Celular , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Prueba de Complementación Genética , Glucuronidasa/metabolismo , Proteínas Fluorescentes Verdes/metabolismo , Meristema/genética , Micronúcleos con Defecto Cromosómico , Mutación/genética , Especificidad de Órganos/genética , Fenotipo , Regiones Promotoras Genéticas/genética , Plantones/citología , Fracciones Subcelulares/metabolismo , Canales de Potencial de Receptor Transitorio/genética
14.
J Biol Chem ; 289(18): 12693-704, 2014 May 02.
Artículo en Inglés | MEDLINE | ID: mdl-24652291

RESUMEN

Expression of CGS1, which codes for an enzyme of methionine biosynthesis, is feedback-regulated by mRNA degradation in response to S-adenosyl-L-methionine (AdoMet). In vitro studies revealed that AdoMet induces translation arrest at Ser-94, upon which several ribosomes stack behind the arrested one, and mRNA degradation occurs at multiple sites that presumably correspond to individual ribosomes in a stacked array. Despite the significant contribution of stacked ribosomes to inducing mRNA degradation, little is known about the ribosomes in the stacked array. Here, we assigned the peptidyl-tRNA species of the stacked second and third ribosomes to their respective codons and showed that they are arranged at nine-codon intervals behind the Ser-94 codon, indicating tight stacking. Puromycin reacts with peptidyl-tRNA in the P-site, releasing the nascent peptide as peptidyl-puromycin. This reaction is used to monitor the activity of the peptidyltransferase center (PTC) in arrested ribosomes. Puromycin reaction of peptidyl-tRNA on the AdoMet-arrested ribosome, which is stalled at the pre-translocation step, was slow. This limited reactivity can be attributed to the peptidyl-tRNA occupying the A-site at this step rather than to suppression of PTC activity. In contrast, puromycin reactions of peptidyl-tRNA with the stacked second and third ribosomes were slow but were not as slow as pre-translocation step ribosomes. We propose that the anticodon end of peptidyl-tRNA resides in the A-site of the stacked ribosomes and that the stacked ribosomes are stalled at an early step of translocation, possibly at the P/E hybrid state.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Liasas de Carbono-Oxígeno/metabolismo , Extensión de la Cadena Peptídica de Translación , Ribosomas/metabolismo , S-Adenosilmetionina/metabolismo , Secuencia de Aminoácidos , Proteínas de Arabidopsis/genética , Secuencia de Bases , Sitios de Unión/genética , Liasas de Carbono-Oxígeno/genética , Electroforesis en Gel de Poliacrilamida , Cinética , Modelos Genéticos , Datos de Secuencia Molecular , Mutación , Péptidos/genética , Péptidos/metabolismo , Puromicina/análogos & derivados , Puromicina/metabolismo , Estabilidad del ARN , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN de Planta/genética , ARN de Planta/metabolismo , Aminoacil-ARN de Transferencia/metabolismo , Ribosomas/genética , S-Adenosilmetionina/genética , Transcripción Genética
15.
Plant Cell Physiol ; 56(4): 620-30, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25670713

RESUMEN

Boron, an essential micronutrient, is transported in roots of Arabidopsis thaliana mainly by two different types of transporters, BORs and NIPs (nodulin26-like intrinsic proteins). Both are plasma membrane localized, but have distinct transport properties and patterns of cell type-specific accumulation with different polar localizations, which are likely to affect boron distribution. Here, we used mathematical modeling and an experimental determination to address boron distributions in the root. A computational model of the root is created at the cellular level, describing the boron transporters as observed experimentally. Boron is allowed to diffuse into roots, in cells and cell walls, and to be transported over plasma membranes, reflecting the properties of the different transporters. The model predicts that a region around the quiescent center has a higher concentration of soluble boron than other portions. To evaluate this prediction experimentally, we determined the boron distribution in roots using laser ablation-inductivity coupled plasma-mass spectrometry. The analysis indicated that the boron concentration is highest near the tip and is lower in the more proximal region of the meristem zone, similar to the pattern of soluble boron distribution predicted by the model. Our model also predicts that upward boron flux does not continuously increase from the root tip toward the mature region, indicating that boron taken up in the root tip is not efficiently transported to shoots. This suggests that root tip-absorbed boron is probably used for local root growth, and that instead it is the more mature root regions which have a greater role in transporting boron toward the shoots.


Asunto(s)
Arabidopsis/metabolismo , Boro/metabolismo , Meristema/metabolismo , Modelos Biológicos , Proteínas de Arabidopsis/metabolismo , Transporte Biológico , Simulación por Computador , Difusión , Rayos Láser , Reproducibilidad de los Resultados , Solubilidad , Espectrofotometría Atómica
16.
J Exp Bot ; 66(13): 3657-67, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25908239

RESUMEN

To increase our understanding of the adaptation for copper (Cu) deficiency, Arabidopsis mutants with apparent alterations under Cu deficiency were identified. In this report, a novel mutant, tpst-2, was found to be more sensitive than wild-type (Col-0) plants to Cu deficiency during root elongation. The positional cloning of tpst-2 revealed that this gene encodes a tyrosylprotein sulfotransferase (TPST). Moreover, the ethylene production of tpst-2 mutant was higher than that of Col-0 under Cu deficiency, and adding the ethylene response inhibitor AgNO3 partially rescued defects in root elongation. Interestingly, peptide hormone phytosulfokine (PSK) treatment also repressed the ethylene production of tpst-2 mutant plants. Our results revealed that TPST suppressed ethylene production through the action of PSK.


Asunto(s)
Proteínas de Arabidopsis/genética , Arabidopsis/genética , Cobre/farmacología , Etilenos/biosíntesis , Mutación/genética , Fitoquímicos/metabolismo , Arabidopsis/efectos de los fármacos , Proteínas de Arabidopsis/metabolismo , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Genes de Plantas , Homeostasis/efectos de los fármacos , Fenotipo , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/genética , Empalme del ARN/genética , Receptores de Superficie Celular/metabolismo , Plantones/efectos de los fármacos , Plantones/metabolismo , Transducción de Señal/efectos de los fármacos , Transducción de Señal/genética , Nitrato de Plata/farmacología , Sulfotransferasas/metabolismo
17.
J Plant Res ; 127(1): 57-66, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24338062

RESUMEN

After the accident of the Fukushima 1 Nuclear Power Plant in March 2011, radioactive cesium was released and paddy fields in a wide area including Fukushima Prefecture were contaminated. To estimate the levels of radioactive Cs accumulation in rice produced in Fukushima, it is crucial to obtain the actual data of Cs accumulation levels in rice plants grown in the actual paddy field in Fukushima City. We herein conducted a two-year survey in 2011 and 2012 of radioactive and non-radioactive Cs accumulation in rice using a number of rice cultivars grown in the paddy field in Fukushima City. Our study demonstrated a substantial variation in Cs accumulation levels among the cultivars of rice.


Asunto(s)
Radioisótopos de Cesio/metabolismo , Accidente Nuclear de Fukushima , Oryza/metabolismo , Suelo/química , Agricultura , Biodegradación Ambiental , Isótopos de Cesio/análisis , Isótopos de Cesio/metabolismo , Radioisótopos de Cesio/análisis , Japón , Plantas de Energía Nuclear , Oryza/química , Tallos de la Planta/química , Tallos de la Planta/metabolismo , Monitoreo de Radiación , Contaminantes Radiactivos del Suelo/análisis , Contaminantes Radiactivos del Suelo/metabolismo , Especificidad de la Especie
18.
Plant Phenomics ; 6: 0146, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38629079

RESUMEN

Recent years have seen the development of novel, rapid, and inexpensive techniques for collecting plant data to monitor the nutritional status of crops. These techniques include hyperspectral imaging, which has been widely used in combination with machine learning models to predict element concentrations in plants. When there are multiple elements, the machine learning models are trained with spectral features to predict individual element concentrations; this type of single-target prediction is known as single-target regression. Although this method can achieve reliable accuracy for some elements, there are others that remain less accurate. We aimed to improve the accuracy of element concentration predictions by using a multi-target regression method that sequentially augmented the original input features (hyperspectral imaging) by chaining the predicted element concentration values. To evaluate the multi-target method, the concentrations of 17 elements in tomato leaves were predicted and compared with the single-target regression results. We trained 5 machine learning models with hyperspectral data and predicted element concentration values and found a significant improvement in the prediction accuracy for 10 elements (Mg, P, S, Mn, Fe, Co, Cu, Sr, Mo, and Cd). Furthermore, our multi-target regression method outperformed single-target predictions by increasing the coefficient of determination (R2) for elements such as Mn, Cu, Co, Fe, and Mg by 12.5%, 10.3%, 11%, 10%, and 8.4%, respectively. Hence, our multi-target method can improve the accuracy of predicting 10-element concentrations compared to single-target regression.

19.
Nat Commun ; 15(1): 733, 2024 Jan 29.
Artículo en Inglés | MEDLINE | ID: mdl-38286991

RESUMEN

Legumes control root nodule symbiosis (RNS) in response to environmental nitrogen availability. Despite the recent understanding of the molecular basis of external nitrate-mediated control of RNS, it remains mostly elusive how plants regulate physiological processes depending on internal nitrogen status. In addition, iron (Fe) acts as an essential element that enables symbiotic nitrogen fixation; however, the mechanism of Fe accumulation in nodules is poorly understood. Here, we focus on the transcriptome in response to internal nitrogen status during RNS in Lotus japonicus and identify that IRON MAN (IMA) peptide genes are expressed during symbiotic nitrogen fixation. We show that LjIMA1 and LjIMA2 expressed in the shoot and root play systemic and local roles in concentrating internal Fe to the nodule. Furthermore, IMA peptides have conserved roles in regulating nitrogen homeostasis by adjusting nitrogen-Fe balance in L. japonicus and Arabidopsis thaliana. These findings indicate that IMA-mediated Fe provision plays an essential role in regulating nitrogen-related physiological processes.


Asunto(s)
Arabidopsis , Lotus , Humanos , Nódulos de las Raíces de las Plantas/metabolismo , Nitrógeno , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Lotus/metabolismo , Fijación del Nitrógeno/fisiología , Simbiosis/fisiología , Homeostasis , Arabidopsis/genética , Arabidopsis/metabolismo , Regulación de la Expresión Génica de las Plantas , Nodulación de la Raíz de la Planta/genética
20.
Plant Cell Physiol ; 54(7): 1056-63, 2013 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23596187

RESUMEN

Boron (B) is an essential micronutrient for plants. Efflux-type B transporters, BORs, have been identified in Arabidopsis thaliana and rice. Here we identified BOR1 genes encoding B efflux transporters, from the hexaploid genome of wheat (Triticum aestivum L.). We cloned three genes closely related to OsBOR1 and named them TaBOR1.1, TaBOR1.2 and TaBOR1.3. All three TaBOR1s showed B efflux activities when expressed in tobacco BY-2 cells. TaBOR1-green fluorescent protein (GFP) fusion proteins were expressed in Arabidopsis leaf cells localized in the plasma membrane. The transcript accumulation patterns of the three genes differ in terms of tissue specificity and B nutrition responses. In roots, transcripts for all three genes accumulated abundantly while in shoots, the TaBOR1.2 transcript is the most abundant, followed by those of TaBOR1.1 and TaBOR1.3. Accumulation of TaBOR1.1 transcript is up-regulated under B deficiency conditions in both roots and shoots. In contrast, TaBOR1.2 transcript accumulation significantly increased in roots under excess B conditions. TaBOR1.3 transcript accumulation was reduced under excess B. Taken together, these results demonstrated that TaBOR1s are the B efflux transporters in wheat and, interestingly, the genes on the A, B and D genomes have different expression patterns.


Asunto(s)
Boro/metabolismo , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genoma de Planta/genética , Proteínas de Plantas/genética , Triticum/genética , Secuencia de Aminoácidos , Arabidopsis/citología , Arabidopsis/genética , Arabidopsis/metabolismo , Línea Celular , Membrana Celular/metabolismo , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Microscopía Confocal , Datos de Secuencia Molecular , Filogenia , Hojas de la Planta/citología , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Proteínas de Plantas/clasificación , Proteínas de Plantas/metabolismo , Raíces de Plantas/genética , Raíces de Plantas/metabolismo , Brotes de la Planta/genética , Brotes de la Planta/metabolismo , Poliploidía , Isoformas de Proteínas/clasificación , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Homología de Secuencia de Aminoácido , Triticum/metabolismo
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