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1.
Mol Cell ; 59(1): 22-34, 2015 Jul 02.
Artículo en Inglés | MEDLINE | ID: mdl-25982115

RESUMEN

Despite the crucial role played by the glyoxylate cycle in the virulence of pathogens, seed germination in plants, and sexual development in fungi, we still have much to learn about its regulation. Here, we show that a previously uncharacterized SCF(Ucc1) ubiquitin ligase mediates proteasomal degradation of citrate synthase in the glyoxylate cycle to maintain metabolic homeostasis in glucose-grown cells. Conversely, transcription of the F box subunit Ucc1 is downregulated in C2-compound-grown cells, which require increased metabolic flux for gluconeogenesis. Moreover, in vitro analysis demonstrates that oxaloacetate regenerated through the glyoxylate cycle induces a conformational change in citrate synthase and inhibits its recognition and ubiquitination by SCF(Ucc1), suggesting the existence of an oxaloacetate-dependent positive feedback loop that stabilizes citrate synthase. We propose that SCF(Ucc1)-mediated regulation of citrate synthase acts as a metabolic switch for the glyoxylate cycle in response to changes in carbon source, thereby ensuring metabolic versatility and flexibility.


Asunto(s)
Citrato (si)-Sintasa/metabolismo , Proteínas de Neoplasias/biosíntesis , Proteínas del Tejido Nervioso/biosíntesis , Proteínas Ligasas SKP Cullina F-box/metabolismo , Saccharomyces cerevisiae/metabolismo , Ciclo Celular/genética , Proteínas F-Box/metabolismo , Glucosa/metabolismo , Glioxilatos/metabolismo , Proteínas de Neoplasias/genética , Proteínas del Tejido Nervioso/genética , Ácido Oxaloacético/metabolismo , Complejo de la Endopetidasa Proteasomal/metabolismo , Transcripción Genética/genética , Ubiquitinación
2.
Int J Mol Sci ; 22(3)2021 Jan 29.
Artículo en Inglés | MEDLINE | ID: mdl-33573089

RESUMEN

Candida glabrata is an emerging fungal pathogen whose success depends on its ability to resist antifungal drugs but also to thrive against host defenses. In this study, the predicted multidrug transporter CgTpo4 (encoded by ORF CAGL0L10912g) is described as a new determinant of virulence in C. glabrata, using the infection model Galleria mellonella. The CgTPO4 gene was found to be required for the C. glabrata ability to kill G. mellonella. The transporter encoded by this gene is also necessary for antimicrobial peptide (AMP) resistance, specifically against histatin-5. Interestingly, G. mellonella's AMP expression was found to be strongly activated in response to C. glabrata infection, suggesting AMPs are a key antifungal defense. CgTpo4 was also found to be a plasma membrane exporter of polyamines, especially spermidine, suggesting that CgTpo4 is able to export polyamines and AMPs, thus conferring resistance to both stress agents. Altogether, this study presents the polyamine exporter CgTpo4 as a determinant of C. glabrata virulence, which acts by protecting the yeast cells from the overexpression of AMPs, deployed as a host defense mechanism.


Asunto(s)
Candida glabrata/genética , Candidiasis/microbiología , Proteínas Fúngicas/genética , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/genética , Poliaminas/farmacología , Proteínas Citotóxicas Formadoras de Poros/farmacología , Antifúngicos/metabolismo , Antifúngicos/farmacología , Candida glabrata/efectos de los fármacos , Candida glabrata/metabolismo , Candida glabrata/patogenicidad , Candidiasis/tratamiento farmacológico , Candidiasis/metabolismo , Farmacorresistencia Fúngica , Proteínas Fúngicas/metabolismo , Regulación Fúngica de la Expresión Génica , Genes Fúngicos , Histatinas/metabolismo , Histatinas/farmacología , Humanos , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/metabolismo , Poliaminas/metabolismo , Proteínas Citotóxicas Formadoras de Poros/metabolismo , Virulencia
3.
Artículo en Inglés | MEDLINE | ID: mdl-32571817

RESUMEN

The ability to acquire azole resistance is an emblematic trait of the fungal pathogen Candida glabrata Understanding the molecular basis of azole resistance in this pathogen is crucial for designing more suitable therapeutic strategies. This study shows that the C. glabrata transcription factor (TF) CgRpn4 is a determinant of azole drug resistance. RNA sequencing during fluconazole exposure revealed that CgRpn4 regulates the expression of 212 genes, activating 80 genes and repressing, likely in an indirect fashion, 132 genes. Targets comprise several proteasome and ergosterol biosynthesis genes, including ERG1, ERG2, ERG3, and ERG11 The localization of CgRpn4 to the nucleus increases upon fluconazole stress. Consistent with a role in ergosterol and plasma membrane homeostasis, CgRpn4 is required for the maintenance of ergosterol levels upon fluconazole stress, which is associated with a role in the upkeep of cell permeability and decreased intracellular fluconazole accumulation. We provide evidence that CgRpn4 directly regulates ERG11 expression through the TTGCAAA binding motif, reinforcing the relevance of this regulatory network in azole resistance. In summary, CgRpn4 is a new regulator of the ergosterol biosynthesis pathway in C. glabrata, contributing to plasma membrane homeostasis and, thus, decreasing azole drug accumulation.


Asunto(s)
Candida glabrata , Fluconazol , Factores de Transcripción , Antifúngicos/farmacología , Candida glabrata/genética , Candida glabrata/metabolismo , Membrana Celular/metabolismo , Farmacorresistencia Fúngica/genética , Ergosterol , Fluconazol/farmacología , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Regulación Fúngica de la Expresión Génica , Permeabilidad , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
4.
Artículo en Inglés | MEDLINE | ID: mdl-30348666

RESUMEN

Candida glabrata is an emerging fungal pathogen. Its increased prevalence is associated with its ability to rapidly develop antifungal drug resistance, particularly to azoles. In order to unravel new molecular mechanisms behind azole resistance, a transcriptomics analysis of the evolution of a C. glabrata clinical isolate (isolate 044) from azole susceptibility to posaconazole resistance (21st day), clotrimazole resistance (31st day), and fluconazole and voriconazole resistance (45th day), induced by longstanding incubation with fluconazole, was carried out. All the evolved strains were found to accumulate lower concentrations of azole drugs than the parental strain, while the ergosterol concentration remained mostly constant. However, only the population displaying resistance to all azoles was found to have a gain-of-function mutation in the C. glabrataPDR1 gene, leading to the upregulation of genes encoding multidrug resistance transporters. Intermediate strains, exhibiting posaconazole/clotrimazole resistance and increased fluconazole/voriconazole MIC levels, were found to display alternative ways to resist azole drugs. Particularly, posaconazole/clotrimazole resistance after 31 days was correlated with increased expression of adhesin genes. This finding led us to identify the Epa3 adhesin as a new determinant of azole resistance. Besides being required for biofilm formation, Epa3 expression was found to decrease the intracellular accumulation of azole antifungal drugs. Altogether, this work provides a glimpse of the transcriptomics evolution of a C. glabrata population toward multiazole resistance, highlighting the multifactorial nature of the acquisition of azole resistance and pointing out a new player in azole resistance.


Asunto(s)
Antifúngicos/farmacología , Azoles/farmacología , Candida glabrata/efectos de los fármacos , Candida glabrata/genética , Farmacorresistencia Fúngica/genética , Candida glabrata/aislamiento & purificación , Clotrimazol/farmacología , Ergosterol/metabolismo , Fluconazol/farmacología , Regulación Fúngica de la Expresión Génica/efectos de los fármacos , Humanos , Proteínas de Transporte de Membrana/genética , Pruebas de Sensibilidad Microbiana , Factores de Transcripción/genética , Transcriptoma/genética , Triazoles/farmacología , Voriconazol/farmacología
5.
Cell Microbiol ; 20(3)2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29113011

RESUMEN

Aspergillus fumigatus is an important fungal pathogen of humans. Inhaled conidia of A. fumigatus adhere to pulmonary epithelial cells, causing opportunistic infection. However, little is known about the molecular mechanism of the adherence of resting conidia. Fungal molecules adhesive to host cells are presumed to be displayed on the conidial surface during conidial formation as a result of changes in gene expression. Therefore, we exhaustively searched for adhesion molecules by comparing the phenotypes and the gene expression profiles of A. fumigatus strains that have conidia showing either high or low adherence to human pulmonary A549 cells. Morphological observation suggested that strains that produce conidia of reduced size, hydrophobicity, or number show decreased adherence to A549 cells. K-means cluster analyses of gene expression revealed 31 genes that were differentially expressed in the high-adherence strains during conidial formation. We knocked out three of these genes and showed that the conidia of AFUA_4G01030 (encoding a hypothetical protein) and AFUA_4G08805 (encoding a haemolysin-like protein) knockout strains had significantly reduced adherence to host cells. Furthermore, the conidia of these knockout strains had lower hydrophobicity and fewer surface spikes compared to the control strain. We suggest that the selectively expressed gene products, including those we identified experimentally, have composite synergistic roles in the adhesion of conidia to pulmonary epithelial cells.


Asunto(s)
Aspergillus fumigatus/genética , Aspergillus fumigatus/metabolismo , Proteínas Fúngicas/genética , Células A549 , Análisis por Conglomerados , Proteínas Fúngicas/metabolismo , Perfilación de la Expresión Génica , Humanos , Análisis de Componente Principal , Esporas Fúngicas/genética , Esporas Fúngicas/metabolismo
6.
J Clin Microbiol ; 56(7)2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29720429

RESUMEN

Haemophilus influenzae type b (Hib) conjugate vaccines have led to dramatic reductions in Hib disease among young children worldwide. Nontypeable H. influenzae (NTHi) is now the major cause of invasive H. influenzae infections. We investigated the clinical characteristics of invasive NTHi diseases among children in Japan, to clarify the pathogenicity of isolated NTHi strains. The mortality rate was 10.7%, with deaths occurring mainly among children with underlying comorbidities. Biotypes II and III were the most common, and most strains (64.3%) had multiple amino acid substitutions at the Asp-350, Ser-357, Ser-385, and/or Met-377 sites of penicillin-binding protein 3. Two strains were ß-lactamase positive and ampicillin-clavulanate resistant. Biofilm indices varied widely, and IS1016 was detected in 10.7% of the strains tested. Moreover, there was wide variation in the characteristics of invasive NTHi strains. NTHi strains, showing great genetic diversity, are responsible for most invasive H. influenzae infections in children in the postvaccine era. Continuous monitoring of NTHi strains responsible for invasive diseases in children is important to detect changes in the epidemiology of invasive H. influenzae infections in the postvaccine era.


Asunto(s)
Infecciones por Haemophilus/microbiología , Haemophilus influenzae/clasificación , Haemophilus influenzae/fisiología , Antibacterianos/farmacología , Adhesión Bacteriana/genética , Técnicas de Tipificación Bacteriana , Biopelículas/crecimiento & desarrollo , Niño , Preescolar , Elementos Transponibles de ADN , Farmacorresistencia Bacteriana/genética , Variación Genética , Genoma Bacteriano/genética , Infecciones por Haemophilus/epidemiología , Infecciones por Haemophilus/mortalidad , Infecciones por Haemophilus/fisiopatología , Haemophilus influenzae/efectos de los fármacos , Haemophilus influenzae/genética , Humanos , Lactante , Recién Nacido , Japón/epidemiología , Pruebas de Sensibilidad Microbiana , Análisis de Secuencia de ADN
7.
FEMS Yeast Res ; 18(1)2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29087506

RESUMEN

The frequent emergence of azole resistance among Candida glabrata strains contributes to increase the incidence of infections caused by this species. Whole-genome sequencing of a fluconazole and voriconazole-resistant clinical isolate (FFUL887) and subsequent comparison with the genome of the susceptible strain CBS138 revealed prominent differences in several genes documented to promote azole resistance in C. glabrata. Among these was the transcriptional regulator CgPdr1. The CgPdr1 FFUL887 allele included a K274Q modification not documented in other azole-resistant strains. Transcriptomic profiling evidenced the upregulation of 92 documented targets of CgPdr1 in the FFUL887 strain, supporting the idea that the K274Q substitution originates a CgPdr1 gain-of-function mutant. The expression of CgPDR1K274Q in the FFUL887 background sensitised the cells against high concentrations of organic acids at a low pH (4.5), but had no detectable effect in tolerance towards other environmental stressors. Comparison of the genome of FFUL887 and CBS138 also revealed prominent differences in the sequence of adhesin-encoding genes, while comparison of the transcriptome of the two strains showed a significant remodelling of the expression of genes involved in metabolism of carbohydrates, nitrogen and sulphur in the FFUL887 strain; these responses likely reflecting adaptive responses evolved by the clinical strain during colonisation of the host.


Asunto(s)
Candida glabrata/efectos de los fármacos , Candida glabrata/fisiología , Candidiasis/microbiología , Farmacorresistencia Fúngica , Regulación Fúngica de la Expresión Génica , Genómica , Interacciones Huésped-Patógeno , Transcriptoma , Alelos , Antifúngicos/farmacología , Biología Computacional/métodos , Fluconazol/farmacología , Eliminación de Gen , Perfilación de la Expresión Génica , Frecuencia de los Genes , Genoma Fúngico , Genómica/métodos , Humanos , Anotación de Secuencia Molecular , Voriconazol/farmacología
8.
BMC Genomics ; 18(1): 942, 2017 Dec 04.
Artículo en Inglés | MEDLINE | ID: mdl-29202712

RESUMEN

BACKGROUND: Aspergillus fumigatus is a human fungal pathogen that causes aspergillosis in immunocompromised hosts. A. fumigatus is believed to be exposed to diverse environmental stresses in the host cells. The adaptation mechanisms are critical for infections in human bodies. Transcriptional networks in response to diverse environmental challenges remain to be elucidated. To gain insights into the adaptation to environmental stresses in A. fumigatus mycelia, we conducted time series transcriptome analyses. RESULTS: With the aid of RNA-seq, we explored the global gene expression profiles of mycelia in A. fumigatus upon exposure to diverse environmental changes, including heat, superoxide, and osmotic stresses. From the perspective of global transcriptomes, transient responses to superoxide and osmotic stresses were observed while responses to heat stresses were gradual. We identified the stress-responsive genes for particular stresses, and the 266 genes whose expression levels drastically fluctuated upon exposure to all tested stresses. Among these, the 77 environmental stress response genes are conserved in S. cerevisiae, suggesting that these genes might be more general prerequisites for adaptation to environmental stresses. Finally, we revealed the strong correlations among expression profiles of genes related to 'rRNA processing'. CONCLUSIONS: The time series transcriptome analysis revealed the stress-responsive genes underlying the adaptation mechanisms in A. fumigatus mycelia. These results will shed light on the regulatory networks underpinning the adaptation of the filamentous fungi.


Asunto(s)
Aspergillus fumigatus/genética , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Micelio/genética , Adaptación Fisiológica , Aspergillus fumigatus/fisiología , Humanos , Micelio/metabolismo , Análisis de Secuencia de ARN/métodos , Estrés Fisiológico , Transcriptoma
9.
Curr Genet ; 63(4): 697-707, 2017 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-28011993

RESUMEN

It is well known that 5-fluoroorotic acid (5-FOA)-resistant mutants isolated from wild-type Cryptococcus neoformans are exclusively either ura3 or ura5 mutants. Unexpectedly, many of the 5-FOA-resistant mutants isolated in our selective regime were Ura+. We identified CNM00460 as the gene responsible for these mutations. Cnm00460 belongs to the nucleobase cation symporter 1/purine-related transporter (NCS1/PRT) super family of fungal transporters, representative members of which are uracil transporter, uridine transporter and allantoin transporter of Saccharomyces cerevisiae. Since the CNM00460 gene turned out to be involved in utilization of orotic acid, most probably as transporter, we designated this gene Orotic Acid Transporter 1 (OAT1). This is the first report of orotic acid transporter in this family. C. neoformans has four members of the NCS1/PRT family, including Cnm00460, Cnm02550, Cnj00690, and Cnn02280. Since the cnm02550∆ strain showed resistance to 5-fluorouridine, we concluded that CNM02550 encodes uridine permease and designated it URidine Permease 1 (URP1). We found that oat1 mutants were sensitive to 5-FOA in the medium containing proline as nitrogen source. A mutation in the GAT1 gene, a positive transcriptional regulator of genes under the control of nitrogen metabolite repression, in the genetic background of oat1 conferred the phenotype of weak resistance to 5-FOA even in the medium using proline as nitrogen source. Thus, we proposed the existence of another orotic acid utilization system (tentatively designated OAT2) whose expression is under the control of nitrogen metabolite repression at least in part. We found that the OAT1 gene is necessary for full pathogenic activity of C. neoformans var. neoformans.


Asunto(s)
Transporte Biológico/genética , Cryptococcus neoformans/genética , Proteínas de Transporte de Membrana/genética , Cryptococcus neoformans/efectos de los fármacos , Cryptococcus neoformans/patogenicidad , Regulación Fúngica de la Expresión Génica/efectos de los fármacos , Mutación , Nitrógeno/metabolismo , Ácido Orótico/análogos & derivados , Ácido Orótico/farmacología , Uracilo/metabolismo
10.
Int J Mol Sci ; 18(1)2017 Jan 17.
Artículo en Inglés | MEDLINE | ID: mdl-28106726

RESUMEN

Determination of hepatitis C virus (HCV) genotypes plays an important role in the direct-acting agent era. Discrepancies between HCV genotyping and serotyping assays are occasionally observed. Eighteen samples with discrepant results between genotyping and serotyping methods were analyzed. HCV serotyping and genotyping were based on the HCV nonstructural 4 (NS4) region and 5'-untranslated region (5'-UTR), respectively. HCV core and NS4 regions were chosen to be sequenced and were compared with the genotyping and serotyping results. Deep sequencing was also performed for the corresponding HCV NS4 regions. Seventeen out of 18 discrepant samples could be sequenced by the Sanger method. Both HCV core and NS4 sequences were concordant with that of genotyping in the 5'-UTR in all 17 samples. In cloning analysis of the HCV NS4 region, there were several amino acid variations, but each sequence was much closer to the peptide with the same genotype. Deep sequencing revealed that minor clones with different subgenotypes existed in two of the 17 samples. Genotyping by genome amplification showed high consistency, while several false reactions were detected by serotyping. The deep sequencing method also provides accurate genotyping results and may be useful for analyzing discrepant cases. HCV genotyping should be correctly determined before antiviral treatment.


Asunto(s)
Regiones no Traducidas 5'/genética , Genoma Viral/genética , Hepacivirus/genética , Proteínas no Estructurales Virales/genética , Anciano , Anciano de 80 o más Años , Secuencia de Aminoácidos , Antivirales/uso terapéutico , Femenino , Genotipo , Técnicas de Genotipaje/métodos , Hepacivirus/clasificación , Hepacivirus/fisiología , Hepatitis C/sangre , Hepatitis C/tratamiento farmacológico , Hepatitis C/virología , Secuenciación de Nucleótidos de Alto Rendimiento/métodos , Humanos , Masculino , Persona de Mediana Edad , Reproducibilidad de los Resultados , Serogrupo , Serotipificación/métodos , Resultado del Tratamiento , Proteínas del Núcleo Viral/genética
11.
Curr Top Microbiol Immunol ; 384: 127-49, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25033755

RESUMEN

The cabbage butterfly, Pieris rapae, and related species possess a previously unknown ADP-ribosylating toxin, guanine specific ADP-ribosyltransferase. This enzyme toxin, known as pierisin, consists of enzymatic N-terminal domain and receptor-binding C-terminal domain, or typical AB-toxin structure. Pierisin efficiently transfers an ADP-ribosyl moiety to the N(2) position of the guanine base of dsDNA. Receptors for pierisin are suggested to be the neutral glycosphingolipids, globotriaosylceramide (Gb3), and globotetraosylceramide (Gb4). This DNA-modifying toxin exhibits strong cytotoxicity and induces apoptosis in various human cell lines, which can be blocked by Bcl-2. Pierisin also produces detrimental effects on the eggs and larvae of the non-habitual parasitoids. In contrast, a natural parasitoid of the cabbage butterfly, Cotesia glomerata, was resistant to this toxin. The physiological role of pierisin in the butterfly is suggested to be a defense factor against parasitization by wasps. Other type of DNA ADP-ribosyltransferase is present in certain kinds of edible clams. For example, the CARP-1 protein found in Meretrix lamarckii consists of an enzymatic domain without a possible receptor-binding domain. Pierisin and CARP-1 are almost fully non-homologous at the amino acid sequence level, but other ADP-ribosyltransferases homologous to pierisin are present in different biological species such as eubacterium Streptomyces. Possible diverse physiological roles of the DNA ADP-ribosyltransferases are discussed.


Asunto(s)
ADP Ribosa Transferasas/metabolismo , Bivalvos/enzimología , Mariposas Diurnas/enzimología , ADN/metabolismo , Proteínas de Insectos/metabolismo , Mariscos/análisis , ADP Ribosa Transferasas/química , ADP Ribosa Transferasas/genética , Adenosina Difosfato Ribosa/metabolismo , Animales , Bivalvos/química , Bivalvos/genética , Mariposas Diurnas/química , Mariposas Diurnas/genética , Humanos , Proteínas de Insectos/química , Proteínas de Insectos/genética
12.
Fungal Genet Biol ; 80: 19-30, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25957252

RESUMEN

Cryptococcus neoformans is a pathogenic basidiomycetous yeast that can cause life-threatening meningoencephalitis in immuno-compromized patients. To propagate in the human body, this organism has to acquire phosphate that functions in cellular signaling pathways and is also an essential component of nucleic acids and phospholipids. Thus it is reasonable to assume that C. neoformans (Cn) possesses a phosphate regulatory system (PHO system) analogous to that of other fungi. By BLAST searches using the amino acid sequences of the components of the PHO system of Saccharomyces cerevisiae (Sc), we found potential counterparts to ScPHO genes in C. neoformans, namely, acid phosphatase (CnPHO2), the cyclin-dependent protein kinase (CDK) inhibitor (CnPHO81), Pho85-cyclin (CnPHO80), and CDK (CnPHO85). Disruption of each candidate gene, except CnPHO85, followed by phenotypic analysis, identified most of the basic components of the CnPHO system. We found that CnPHO85 was essential for the growth of C. neoformans, having regulatory function in the CnPHO system. Genetic screening and ChIP analysis, showed that CnPHO4 encodes a transcription factor that binds to the CnPHO genes in a Pi-dependent manner. By RNA-seq analysis of the wild-type and the regulatory mutants of the CnPHO system, we found C. neoformans genes whose expression is controlled by the regulators of the CnPHO system. Thus the CnPHO system shares many properties with the ScPHO system, but expression of those CnPHO genes that encode regulators is controlled by phosphate starvation, which is not the case in the ScPHO system (except ScPHO81). We also could identify some genes involved in the stress response of the pathogenic yeast, but CnPho4 appeared to be responsible only for phosphate starvation.


Asunto(s)
Cryptococcus neoformans/genética , Cryptococcus neoformans/metabolismo , Genes Fúngicos , Fosfatos/metabolismo , Criptococosis/microbiología , ARN Mensajero/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Transducción de Señal , Estrés Fisiológico
13.
Med Mycol ; 53(4): 353-60, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25851262

RESUMEN

Aspergillus fumigatus is the Aspergillus species most commonly associated with aspergillosis. Of the various presentations of aspergillosis, one of the most frequently observed in cases involving A. fumigatus pulmonary infections is aspergilloma (PA). In such infections one finds a fungus ball composed of fungal hyphae, inflammatory cells, fibrin, mucus, and tissue debris. Chronic necrotizing pulmonary aspergillosis (CNPA), also known as semi-invasive or invasive aspergillosis, is locally invasive and predominantly seen in patients with mild immunodeficiency or with a chronic lung disease. In the present study, with the aid of a next-generation sequencer, we conducted whole genome sequence (WGS) analyses of 17 strains isolated from patients in Japan with PA and CNPA. A total of 99,088 SNPs were identified by mapping the reads to A. fumigatus genome reference strain Af293, and according to genome-wide phylogenetic analysis, there were no correlations between the whole genome sequence typing results and pathologic conditions of patients. Here, we conducted the first multi-genome WGS study to focus on the A. fumigatus strains isolated from patients with PA and CNPA, and comprehensively characterized genetic variations of strains. WGS approach will help in better understanding of molecular mechanisms of aspergillosis cases caused by A. fumigatus.


Asunto(s)
Aspergillus fumigatus/genética , Aspergillus fumigatus/aislamiento & purificación , Genoma Fúngico , Aspergilosis Pulmonar/microbiología , Aspergilosis Pulmonar/patología , Aspergillus fumigatus/clasificación , ADN de Hongos/química , ADN de Hongos/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Japón
14.
BMC Genomics ; 15: 323, 2014 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-24884595

RESUMEN

BACKGROUND: Actinobacteria of the genus Nocardia usually live in soil or water and play saprophytic roles, but they also opportunistically infect the respiratory system, skin, and other organs of humans and animals. Primarily because of the clinical importance of the strains, some Nocardia genomes have been sequenced, and genome sequences have accumulated. Genome sizes of Nocardia strains are similar to those of Streptomyces strains, the producers of most antibiotics. In the present work, we compared secondary metabolite biosynthesis gene clusters of type-I polyketide synthase (PKS-I) and nonribosomal peptide synthetase (NRPS) among genomes of representative Nocardia species/strains based on domain organization and amino acid sequence homology. RESULTS: Draft genome sequences of Nocardia asteroides NBRC 15531(T), Nocardia otitidiscaviarum IFM 11049, Nocardia brasiliensis NBRC 14402(T), and N. brasiliensis IFM 10847 were read and compared with published complete genome sequences of Nocardia farcinica IFM 10152, Nocardia cyriacigeorgica GUH-2, and N. brasiliensis HUJEG-1. Genome sizes are as follows: N. farcinica, 6.0 Mb; N. cyriacigeorgica, 6.2 Mb; N. asteroides, 7.0 Mb; N. otitidiscaviarum, 7.8 Mb; and N. brasiliensis, 8.9 - 9.4 Mb. Predicted numbers of PKS-I, NRPS, and PKS-I/NRPS hybrid clusters ranged between 4-11, 7-13, and 1-6, respectively, depending on strains, and tended to increase with increasing genome size. Domain and module structures of representative or unique clusters are discussed in the text. CONCLUSION: We conclude the following: 1) genomes of Nocardia strains carry as many PKS-I and NRPS gene clusters as those of Streptomyces strains, 2) the number of PKS-I and NRPS gene clusters in Nocardia strains varies substantially depending on species, and N. brasiliensis strains carry the largest numbers of clusters among the species studied, 3) the seven Nocardia strains studied in the present work have seven common PKS-I and/or NRPS clusters, some of whose products are yet to be studied, and 4) different N. brasiliensis strains have some different gene clusters of PKS-I/NRPS, although the rest of the clusters are common within the N. brasiliensis strains. Genome sequencing suggested that Nocardia strains are highly promising resources in the search of novel secondary metabolites.


Asunto(s)
Familia de Multigenes , Nocardia/enzimología , Sintasas Poliquetidas/genética , Datos de Secuencia Molecular , Nocardia/clasificación , Especificidad de la Especie
15.
J Clin Microbiol ; 52(12): 4202-9, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25232160

RESUMEN

The emergence of azole-resistant strains of Aspergillus fumigatus during treatment for aspergillosis occurs by a mutation selection process. Understanding how antifungal resistance mechanisms evolve in the host environment during infection is of great clinical importance and biological interest. Here, we used next-generation sequencing (NGS) to identify mutations that arose during infection by A. fumigatus strains sequentially isolated from two patients, one with invasive pulmonary aspergillosis (IPA) (five isolations) and the other with aspergilloma (three isolations). The serial isolates had identical microsatellite types, but their growth rates and conidia production levels were dissimilar. A whole-genome comparison showed that three of the five isolates from the IPA patient carried a mutation, while 22 mutations, including six nonsynonymous ones, were found among three isolates from the aspergilloma patient. One aspergilloma isolate carried the cyp51A mutation P216L, which is reported to confer azole resistance, and it displayed an MIC indicating resistance to itraconazole. This isolate harbored five other nonsynonymous mutations, some of which were found in the afyap1 and aldA genes. We further identified a large deletion in the aspergilloma isolate in a region containing 11 genes. This finding suggested the possibility that genomic deletions can occur during chronic infection with A. fumigatus. Overall, our results revealed dynamic alterations that occur in the A. fumigatus genome within its host during infection and treatment.


Asunto(s)
Aspergilosis/microbiología , Aspergillus fumigatus/clasificación , Aspergillus fumigatus/aislamiento & purificación , ADN de Hongos/genética , Farmacorresistencia Fúngica , Genoma Fúngico , Antifúngicos/farmacología , Aspergillus fumigatus/efectos de los fármacos , Aspergillus fumigatus/genética , Azoles/farmacología , ADN de Hongos/química , Genotipo , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Japón , Estudios Longitudinales , Pruebas de Sensibilidad Microbiana , Repeticiones de Microsatélite , Datos de Secuencia Molecular , Mutación , Análisis de Secuencia de ADN
16.
Int J Med Sci ; 11(1): 60-4, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24396287

RESUMEN

Hepatitis A virus (HAV) is a causative agent of acute viral hepatitis for which an effective vaccine has been developed. Here we describe ultra-deep pyrosequences (UDPSs) of HAV 5'-untranslated region (5'UTR) among cases of the same outbreak, which arose from a single source, associated with a revolving sushi bar. We determined the reference sequence from HAV-derived clone from an attendant by the Sanger method. Sixteen UDPSs from this outbreak and one from another sporadic case were compared with this reference. Nucleotide errors yielded a UDPS error rate of < 1%. This study confirmed that nucleotide substitutions of this region are transition mutations in outbreak cases, that insertion was observed only in non-severe cases, and that these nucleotide substitutions were different from those of the sporadic case. Analysis of UDPSs detected low-prevalence HAV variations in 5'UTR, but no specific mutations associated with severity in these outbreak cases. To our surprise, HAV strains in this outbreak conserved HAV IRES sequence even if we performed analysis of UDPSs. UDPS analysis of HAV 5'UTR gave us no association between the disease severity of hepatitis A and HAV 5'UTR substitutions. It might be more interesting to perform ultra-deep sequencing of full length HAV genome in order to reveal possible unknown genomic determinants associated with disease severity. Further studies will be needed.


Asunto(s)
Regiones no Traducidas 5' , Virus de la Hepatitis A/genética , Hepatitis A/epidemiología , Hepatitis A/virología , Adulto , Brotes de Enfermedades , Femenino , Virus de la Hepatitis A/aislamiento & purificación , Humanos , Japón/epidemiología , Masculino , Persona de Mediana Edad , Reacción en Cadena de la Polimerasa , Ribosomas/genética , Análisis de Secuencia de ARN/métodos
17.
Chem Pharm Bull (Tokyo) ; 62(2): 209-12, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24492592

RESUMEN

New meroterpenoids, nakijiquinone S (1) and nakijinol C (2), have been isolated from an Okinawan marine sponge of the family Spongiidae. The gross structures and relative stereochemistries of 1 and 2 were elucidated on the basis of their spectral data. Nakijiquinone S (1) and nakijinol C (2) were new meroterpenoids consisting of a clerodane-type decalin ring connected to a 2-butoxy-5-hydroxy-benzoquinone unit or methyl 2,3,4-trihydroxybenzoate unit through a methylene, respectively. Nakijiquinone S (1) and nakijinol C (2) showed antimicrobial activities against several bacteria and fungi.


Asunto(s)
Antiinfecciosos/química , Antiinfecciosos/farmacología , Benzoquinonas/química , Benzoquinonas/farmacología , Poríferos/química , Pirogalol/análogos & derivados , Sesquiterpenos/química , Sesquiterpenos/farmacología , Animales , Antiinfecciosos/aislamiento & purificación , Bacterias/efectos de los fármacos , Infecciones Bacterianas/tratamiento farmacológico , Benzoquinonas/aislamiento & purificación , Hongos/efectos de los fármacos , Modelos Moleculares , Micosis/tratamiento farmacológico , Pirogalol/química , Pirogalol/aislamiento & purificación , Pirogalol/farmacología , Sesquiterpenos/aislamiento & purificación
18.
Chem Pharm Bull (Tokyo) ; 62(5): 499-503, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24789935

RESUMEN

Five new bromopyrrole alkaloids, 2-bromokeramadine (1), 2-bromo-9,10-dihydrokeramadine (2), tauroacidins C (3) and D (4), and mukanadin G (5), were isolated from an Okinawan marine sponge Agelas sp. The structures of 1-5 were elucidated on the basis of spectroscopic data and conformational analysis. Mukanadin G (5) has a tricyclic skeleton consisting of a fused tetrahydrobenzaminoimidazole and 2,5-dioxopyrrolidine moieties. Antimicrobial activities of 1-3, and 5 as well as three related known bromopyrrole alkaloids, keramadine (6), tauroacidin A (7), and taurodispacamide A (8) were evaluated.


Asunto(s)
Alcaloides/farmacología , Antibacterianos/farmacología , Antifúngicos/farmacología , Hidrocarburos Bromados/farmacología , Poríferos/química , Pirroles/farmacología , Alcaloides/química , Alcaloides/aislamiento & purificación , Animales , Antibacterianos/química , Antibacterianos/aislamiento & purificación , Antifúngicos/química , Antifúngicos/aislamiento & purificación , Bacterias/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Hongos/efectos de los fármacos , Hidrocarburos Bromados/química , Hidrocarburos Bromados/aislamiento & purificación , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Pirroles/química , Pirroles/aislamiento & purificación , Relación Estructura-Actividad
19.
Toxins (Basel) ; 16(6)2024 Jun 14.
Artículo en Inglés | MEDLINE | ID: mdl-38922164

RESUMEN

Pierisin-1 was serendipitously discovered as a strong cytotoxic and apoptosis-inducing protein from pupae of the cabbage butterfly Pieris rapae against cancer cell lines. This 98-kDa protein consists of the N-terminal region (27 kDa) and C-terminal region (71 kDa), and analysis of their biological function revealed that pierisin-1 binds to cell surface glycosphingolipids on the C-terminal side, is taken up into the cell, and is cleaved to N- and C-terminal portions, where the N-terminal portion mono-ADP-ribosylates the guanine base of DNA in the presence of NAD to induce cellular genetic mutation and apoptosis. Unlike other ADP-ribosyltransferases, pieisin-1 was first found to exhibit DNA mono-ADP-ribosylating activity and show anti-cancer activity in vitro and in vivo against various cancer cell lines. Pierisin-1 was most abundantly produced during the transition from the final larval stage to the pupal stage of the cabbage butterfly, and this production was regulated by ecdysteroid hormones. This suggests that pierisn-1 might play a pivotal role in the process of metamorphosis. Moreover, pierisin-1 could contribute as a defense factor against parasitization and microbial infections in the cabbage butterfly. Pierisin-like proteins in butterflies were shown to be present not only among the subtribe Pierina but also among the subtribes Aporiina and Appiadina, and pierisin-2, -3, and -4 were identified in these butterflies. Furthermore, DNA ADP-ribosylating activities were found in six different edible clams. Understanding of the biological nature of pierisin-1 with DNA mono-ADP-ribosylating activity could open up exciting avenues for research and potential therapeutic applications, making it a subject of great interest in the field of molecular biology and biotechnology.


Asunto(s)
ADP Ribosa Transferasas , Apoptosis , Mariposas Diurnas , Proteínas de Insectos , Animales , Proteínas de Insectos/metabolismo , Proteínas de Insectos/química , Apoptosis/efectos de los fármacos , ADP Ribosa Transferasas/metabolismo , ADP Ribosa Transferasas/genética , Humanos , Antineoplásicos/farmacología
20.
Bioorg Med Chem Lett ; 23(1): 244-7, 2013 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-23186727

RESUMEN

Three new polyketides, manzamenones L-N (1-3), have been isolated from an Okinawan marine sponge of the genus Plakortis. The structures of 1-3 were elucidated on the basis of spectroscopic data. Manzamenones L-N (1-3) were new dimeric fatty-acid derivatives consisting of a tetrahydroindenone with three carboxy groups and two hexadecanyl chains. Manzamenones M (2) and N (3) showed antimicrobial activity against several bacteria and fungi.


Asunto(s)
Antiinfecciosos/química , Ácidos Grasos/química , Indenos/química , Plakortis/química , Policétidos/química , Animales , Antiinfecciosos/aislamiento & purificación , Antiinfecciosos/farmacología , Bacterias/efectos de los fármacos , Células de la Médula Ósea/citología , Células Dendríticas/citología , Células Dendríticas/efectos de los fármacos , Células Dendríticas/metabolismo , Ácidos Grasos/aislamiento & purificación , Ácidos Grasos/farmacología , Hongos/efectos de los fármacos , Indenos/aislamiento & purificación , Indenos/farmacología , Interleucina-12/metabolismo , Interleucina-6/metabolismo , Japón , Espectroscopía de Resonancia Magnética , Ratones , Ratones Endogámicos C57BL , Conformación Molecular , Policétidos/aislamiento & purificación , Policétidos/farmacología , Factor de Necrosis Tumoral alfa/metabolismo
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