Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes.

Herbicides are one of the most widely used chemicals in agriculture. While they are known to be harmful to nontarget organisms, the effects of herbicides on the composition and functioning of soil microbial communities remain unclear. Here we show that application of three widely used herbicides-glyphosate, glufosinate, and dicamba-increase the prevalence of antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) in soil microbiomes without clear changes in the abundance, diversity and composition of bacterial communities. Mechanistically, these results could be explained by a positive selection for more tolerant genotypes that acquired several mutations in previously well-characterized herbicide and ARGs. Moreover, herbicide exposure increased cell membrane permeability and conjugation frequency of multidrug resistance plasmids, promoting ARG movement between bacteria. A similar pattern was found in agricultural soils across 11 provinces in China, where herbicide application, and the levels of glyphosate residues in soils, were associated with increased ARG and MGE abundances relative to herbicide-free control sites. Together, our results show that herbicide application can enrich ARGs and MGEs by changing the genetic composition of soil microbiomes, potentially contributing to the global antimicrobial resistance problem in agricultural environments.

Electrochemical Surface Plasmon Resonance Fiber-Optic Sensor: In Situ Detection of Electroactive Biofilms.

Spectroelectrochemistry has been found to be an efficient technique for revealing extracellular electron transfer (EET) mechanism of electroactive biofilms (EABs). Herein, we propose a novel electrochemical surface plasmon resonance (EC-SPR) optical fiber sensor for monitoring EABs in situ. The sensor uses a tilted fiber Bragg grating (TFBG) imprinted in a commercial single-mode fiber and coated with nanoscale gold film for high-efficiency SPR excitation. The wavelength shift of the surface plasmon resonance (SPR) over the fiber surface clearly identifies the electrochemical activity of the surface localized (adjacent to the electrode interface) bacterial cells in EABs, which differs from the "bulk" detections of the conventional electrochemical measurements. A close relationship between the variations of redox state of the EABs and the changes of the SPR under potentiostatic conditions has been achieved, pointing to a new way to study the EET mechanism of the EABs. Benefiting from its compact size, high sensitivity, and ease of use, together with remote operation ability, the proposed sensor opens up a multitude of opportunities for monitoring EABs in various hard-to-reach environments.

Effective control of bioelectricity generation from a microbial fuel cell by logical combinations of pH and temperature.

In this study, a microbial fuel cell (MFC) with switchable power release is designed, which can be logically controlled by combinations of the most physiologically important parameters such as "temperature" and "pH." Changes in voltage output in response to temperature and pH changes were significant in which voltage output decreased sharply when temperature was lowered from 30°C to 10°C or pH was decreased from 7.0 to 5.0. The switchability of the MFC comes from the microbial anode whose activity is affected by the combined medium temperature and pH. Changes in temperature and pH cause reversible activation-inactivation of the bioanode, thus affecting the activity of the entire MFC. With temperature and pH as input signals, an AND logic operation is constructed for the MFC whose power density is controlled. The developed system has the potential to meet the requirement of power supplies producing electrical power on-demand for self-powered biosensors or biomedical devices.

Nonactivated and activated biochar derived from bananas as alternative cathode catalyst in microbial fuel cells.

Nonactivated and activated biochars have been successfully prepared by bananas at different thermotreatment temperatures. The activated biochar generated at 900°C (Biochar-act900) exhibited improved oxygen reduction reaction (ORR) and oxygen evolution reaction (OER) performances in alkaline media, in terms of the onset potential and generated current density. Rotating disk electron result shows that the average of 2.65 electrons per oxygen molecule was transferred during ORR of Biochar-act900. The highest power density of 528.2 mW/m(2) and the maximum stable voltage of 0.47 V were obtained by employing Biochar-act900 as cathode catalyst, which is comparable to the Pt/C cathode. Owning to these advantages, it is expected that the banana-derived biochar cathode can find application in microbial fuel cell systems.

Humic acid-enhanced electron transfer of in vivo cytochrome c as revealed by electrochemical and spectroscopic approaches.

Out-membrane cytochrome c (Cyt c) plays an important role carrying electrons from the inside of microbes to outside electron acceptors. However, the active sites of Cyt c are wrapped by nonconductive peptide chains, hindering direct extracellular electron transfer (EET). Humic acids (HA) have been previously proven to efficiently facilitate EET. However, the inherent mechanism of HA-stimulated EET has not been well interpreted. Here, to probe the mechanism behind HA-stimulated EET, we studied the interaction between Cyt c and HA. The attachment of active in vivo Cyt c on a graphite electrode was achieved when MR-1 cells were self-assembled on the electrode surface. Pure horse-heart Cyt c was covalently immobilized on an electrode via 4-aminobenzoic acid to create an active in vitro Cyt c-enriched surface. Cyclic voltammetric measurements and scanning electron microscopy confirmed the immobilization of bacterial cells and pure Cyt c protein. Electrochemical methods revealed that HA could enhance the electrocatalytic current of both in vitro and in vivo Cyt c towards oxygen and thiosulfate, suggesting enhanced EET. The blue-shifted soret band in the UV-Vis spectra and changes in the excitation/emission matrix fluorescence spectra demonstrated that Cyt c interacted with HA to form organic complexes via electrostatic or hydrogen-bonding interactions. The results will help understand electron shuttle-stimulated EET and develop bacteria-based bioremediation and bioenergy technologies.

In situ investigation of cathode and local biofilm microenvironments reveals important roles of OH- and oxygen transport in microbial fuel cells.

Mass transport within a cathode, including OH(-) transport and oxygen diffusion, is important for the performance of air-cathode microbial fuel cells (MFCs). However, little is known regarding how mass transport profiles are associated with MFC performance and how they are affected by biofilm that inevitably forms on the cathode surface. In this study, the OH(-) and oxygen profiles of a cathode biofilm were probed in situ in an MFC using microelectrodes. The pH of the catalyst layer interface increased from 7.0 ± 0.1 to 9.4 ± 0.3 in a buffered MFC with a bare cathode, which demonstrates significant accumulation of OH(-) in the cathode region. Furthermore, the pH of the interface increased to 10.0 ± 0.3 in the presence of the local biofilm, which indicates that OH(-) transport was severely blocked. As a result of the significant OH(-) accumulation, the maximum power density of the MFC decreased from 1.8 ± 0.1 W/m(2) to 1.5 ± 0.08 W/m(2). In contrast, oxygen crossover, which was significant under low current flow conditions, was limited by the cathode biofilm. As a result of the blocked oxygen crossover, higher MFC coulombic efficiency (CE) was achieved in the presence of the cathode biofilm. These results indicate that enhanced OH(-) transport and decreased oxygen crossover would be beneficial for high-performance MFC development.

Nanostructured macroporous bioanode based on polyaniline-modified natural loofah sponge for high-performance microbial fuel cells.

Microbial fuel cells (MFCs) are a promising technology to recover electrical energy from different types of waste. However, the power density of MFCs for practical applications is limited by the anode performance, mainly resulting from low bacterial loading capacity and low extracellular electron transfer (EET) efficiency. In this study, an open three-dimensional (3D) structured electrode was fabricated using a natural loofah sponge as the precursor material. The loofah sponge was directly converted into a continuous 3D macroporous carbon material via a simple carbonization procedure. The loofah sponge carbon (LSC) was decorated with nitrogen-enriched carbon nanoparticles by cocarbonizing polyaniline-hybridized loofah sponges to improve their microscopic structures. The macroscale porous structure of the LSCs greatly increased the bacterial loading capacity. The microscale coating of carbon nanoparticles favored EET due to the enhanced interaction between the bacteria and the anode. By using a single-chamber MFC equipped with the fabricated anode, a power density of 1090 ± 72 mW m(-2) was achieved, which is much greater than that obtained by similarly sized traditional 3D anodes. This study introduces a promising method for the fabrication of high-performance anodes from low-cost, sustainable natural materials.

Identifying the role of array electrodes in improving the compost quality of food waste during electric field-assisted aerobic composting.

Low composting temperature and long maturation periods are two major problems during food waste composting. In this study, a novel array-based electric field-assisted aerobic composting (Pin-EAC) process was tested on food waste compost. Pin-EAC increase the composting temperature to 69.3 °C, and improved the germination index by 15%. The Pin-EAC took at least 40% less time to reach the standard compost maturity. The fluorescent spectroscopy results showed that Pin-EAC could increase humic acid and fulvic acid by 33% and 37%, respectively. Pin-EAC could increase the diversity of thermophilic bacteria during composting. The co-occurrence network shown that Pin-EAC are more closely related to oxygen and temperature. This work has initially shown that the use of an electric field could improve food waste composting quality, suggesting that the Pin-EAC process is an effective strategy for high-water and high-oil organic solid waste aerobic composting.

Diagnostic efficiency of multi-modal MRI based deep learning with Sobel operator in differentiating benign and malignant breast mass lesions-a retrospective study.

Purpose: To compare the diagnostic efficiencies of deep learning single-modal and multi-modal for the classification of benign and malignant breast mass lesions. Methods: We retrospectively collected data from 203 patients (207 lesions, 101 benign and 106 malignant) with breast tumors who underwent breast magnetic resonance imaging (MRI) before surgery or biopsy between January 2014 and October 2020. Mass segmentation was performed based on the three dimensions-region of interest (3D-ROI) minimum bounding cube at the edge of the lesion. We established single-modal models based on a convolutional neural network (CNN) including T2WI and non-fs T1WI, the dynamic contrast-enhanced (DCE-MRI) first phase was pre-contrast T1WI (d1), and Phases 2, 4, and 6 were post-contrast T1WI (d2, d4, d6); and Multi-modal fusion models with a Sobel operator (four_mods:T2WI, non-fs-T1WI, d1, d2). Training set (n = 145), validation set (n = 22), and test set (n = 40). Five-fold cross validation was performed. Accuracy, sensitivity, specificity, negative predictive value, positive predictive value, and area under the ROC curve (AUC) were used as evaluation indicators. Delong's test compared the diagnostic performance of the multi-modal and single-modal models. Results: All models showed good performance, and the AUC values were all greater than 0.750. Among the single-modal models, T2WI, non-fs-T1WI, d1, and d2 had specificities of 77.1%, 77.2%, 80.2%, and 78.2%, respectively. d2 had the highest accuracy of 78.5% and showed the best diagnostic performance with an AUC of 0.827. The multi-modal model with the Sobel operator performed better than single-modal models, with an AUC of 0.887, sensitivity of 79.8%, specificity of 86.1%, and positive prediction value of 85.6%. Delong's test showed that the diagnostic performance of the multi-modal fusion models was higher than that of the six single-modal models (T2WI, non-fs-T1WI, d1, d2, d4, d6); the difference was statistically significant (p = 0.043, 0.017, 0.006, 0.017, 0.020, 0.004, all were greater than 0.05). Conclusions: Multi-modal fusion deep learning models with a Sobel operator had excellent diagnostic value in the classification of breast masses, and further increase the efficiency of diagnosis.

Alternating electric field enables hyperthermophilic composting of organic solid wastes.

Hyperthermophilic composting (HTC) achieves compost temperatures above 80 °C, usually depending on the inoculated hyperthermophilic bacteria, which has been well used in full-scale plants. However, the scarcity of hyperthermophilic bacteria and the high cultivation cost hinder the development of HTC. Recently, a direct-current electric field applied on conventional aerobic composting raised compost temperature to 70-75 °C, but gradient moisture distribution under the action of the direct-current electric field affected microbial metabolic heat and limited the temperature rise. Herein the effects of alternating electric field (AEF) promoting a uniform water distribution and further raising the temperature to achieve HTC were investigated. Our results demonstrated that AEF raised the compost temperature to 90 °C, and the period with temperatures above 80 °C lasted 4 days. The physicochemical properties and maturity index showed that the AEF improved the biodegradation and humification of organic matter due to the generation of metabolic heat. The AEF enriched thermophilic bacteria (Ureibacillus: by 52.36% on day 3; Navibacillus: by 46.54% on day 41). A techno-economic analysis indicated that the proposed approach with the AEF had a cost advantage over HTC with the inoculation of hyperthermophilic bacteria. Therefore, the AEF composting system represents a novel and applicable strategy for HTC.

In-situ electrolytic oxygen is a feasible replacement for conventional aeration during aerobic composting.

Aerobic composting is an effective recycling method for the disposal and resource utilization of organic solid waste. However, the inappropriate aeration mode used during conventional aerobic composting (CAC) often results in low oxygen utilization efficiency and loss of temperature, which further leads to a long maturation period and large odorous gas (NH3) pollution. Herein, a novel electrolytic oxygen aerobic composting (EOAC) process was invented first using in-situ oxygen generation for aeration by the electrolysis of water in compost. Our results demonstrated that the germination index (GI) significantly increased during EOAC, and the maturation time of compost was shortened by nearly 50% during EOAC compared to CAC, indicating higher oxygen utilization efficiency during EOAC. Meanwhile, NH3 emissions, N2O emissions, and nitrogen loss during the EOAC process decreased by 61%, 46%, and 21%, respectively, compared to CAC. The total relative abundance of thermophilic and electroactive bacteria during EOAC increased remarkably. EOAC inhibited ammoniation, nitrification, and denitrification, and weakened N-associated functional genes. A techno-economic analysis indicated that EOAC had greater technical superiority and cost advantages compared to CAC. This study represents proof-of-principle for EOAC and suggests that in-situ electrolytic oxygen is a feasible replacement for conventional aeration during aerobic composting.

Deciphering the structural characteristics and molecular transformation of dissolved organic matter during the electrolytic oxygen aerobic composting process.

Electrolytic oxygen aerobic composting (EOAC) effectively treats organic solid waste by using in-situ electrolytic oxygen for aeration. However, the fundamental mechanism of compost maturity is still unclear. Therefore, we comprehensively characterized dissolved organic matter (DOM) transformation closely related to compost maturity during EOAC. Excitation-emission matrix-parallel factor (EEM-PARAFAC) and Fourier transform infrared (FTIR) analysis confirmed that EOAC quickly decreased organic matter and increased humus substances, accelerating the compost humification process compared with conventional aerobic composting. Electrospray ionization (ESI) Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) analysis reveals that the double bound equivalent and aromaticity index during EOAC are higher than in conventional aerobic composting (CAC), suggesting more aromatic compounds in EOAC. DOM's detailed transformation investigation suggested that low O/C and high H/C compounds were preferentially decomposed during EOAC. Our investigation firstly extends the in-depth molecular mechanisms of humification during EOAC, and reveals its practical engineering applications.

In situ generated oxygen distribution causes maturity differentiation during electrolytic oxygen aerobic composting.

Electrolytic oxygen aerobic composting (EOAC) is an effective treatment with greater technical superiority and cost advantages for organic solid waste using in situ electrolytic oxygen as a feasible strategy to replace conventional aeration. However, the unclear effects of distribution and variation of in situ electrolytic oxygen on compost maturation in different depth zones of EOAC need further exploration. This study demonstrated that the humification of organic matter was faster at the bottom than in the middle and at the top. The main reason was that the higher oxygen content and lower moisture content in the bottom promoted microbial degradation and heat production, resulting in higher temperatures. The microbial analysis showed that the abundance of typical thermophilic bacteria (such as Cerasibacillus, Lactobacillus, and Pseudogracilibacillus) that could promote compost maturation was higher at the bottom than in the middle and at the top. The finding provided in-depth molecular insights into differentiated humification from bottom to top in EOAC and revealed its further practical engineering applications.

Moisture migration driven by the electric field causes the directional differentiation of compost maturity.

Electric field-assisted aerobic composting (EAC) has been recently believed as a novel and effective process for the resource utilization of organic solid waste. However, the effect of electric field in composting process needs to be further clarified. Herein, moisture migration and compost maturity along electric-field-direction (from anode to cathode) in EAC was first to be explored. It was found that moisture content and compost maturity changed regularly from anode to cathode. At the end of composting, the moisture content of S3 (cathodic zone) was 30% and 62% higher than that of S2 (middle zone) and S1 (anodic zone), respectively. The germination index (a key parameter for compost maturity) in S3 (138.92%) was significantly higher than that of S2 (104.98%) and S1 (84.45%). However, temperatures in S3 were lower than that of S1 and S2, indicating the moisture content played a more important role than temperature for compost maturity in EAC. Furthermore, the microbial activities in S3 were also higher than that of S1 and S2, supporting the trend of compost maturity. This pioneering study demonstrates the electric field can drive moisture gradient migration to control the directional differentiation of compost maturity, showing a great application potential in aerobic composting.

Insight into the synergistic effects of conductive biochar for accelerating maturation during electric field-assisted aerobic composting.

Electric field-assisted aerobic composting (EAC) has been considered as a novel and effective process for enhancing compost maturation. However, the poor conductivity of compost piles affects the efficiency and applicability of EAC. Thus, this study aims to examine how conductive biochar affects compost maturation in biochar-added electric field-assisted aerobic composting (b-EAC). Our results demonstrated that the germination index and humus index significantly increased, and the compost maturation time was shortened by nearly 25% during b-EAC compared to EAC. The total oxygen utilization rate and total relative abundance of electroactive bacteria during b-EAC increased by approximately two and three times those in EAC, respectively. These findings indicated that the addition of conductive biochar has a synergistic effect which facilitated oxygen utilization by reducing resistance and accelerating electron transfer. Therefore, the addition of conductive biochar is proved to be an effective and applicable strategy for optimizing the efficiency of EAC.

Alternating magnetic field mitigates N2O emission during the aerobic composting of chicken manure.

Nitrous oxide (N2O) emission is an environmental problem related to composting. Recently, the electric field-assisted aerobic composting process has been found to be effective for enhancing compost maturity and mitigating N2O emission. However, the insertion of electrodes into the compost pile causes electrode erosion and inconvenience in practical operation. In this study, a novel alternating magnetic field-assisted aerobic composting (AMFAC) process was tested by applying an alternating magnetic field (AMF) to a conventional aerobic composting (CAC) process. The total N2O emission of the AMFAC process was reduced by 39.8% as compared with that of the CAC process. Furthermore, the results demonstrate that the AMF weakened the expressions of the amoA, narG, and nirS functional genes (the maximum reductions were 96%, 83.7%, and 95.5%, respectively), whereas it enhanced the expression of the nosZ functional gene by a maximum factor of 36.5 as compared with that in CAC. A correlation analysis revealed that the nitrification and denitrification processes for N2O emission were suppressed in AMFAC, the main source of N2O emission of which was denitrification. The findings imply that AMFAC is an effective strategy for the reduction of N2O emission during aerobic composting.

Identification of nitrogen-incorporating bacteria in a sequencing batch reactor: A combining cultivation-dependent and cultivation-independent method.

Nitrogen-incorporating bacteria in activated sludge play important roles in nitrogen removal in sequencing bactch reactor (SBR), but the active microorganisms and their interactions in the complex community are rarely revealed. Herein, a combining cultivation-dependent and cultivation-independent methods associated with DNA-stable-isotope probing (SIP) was applied to determine the microbes responsible for nitrogen-incorporating in SBR. Results revealed that Cytophagaceae and Sphingobacteriales were identified to be involved in nitrification, and Anaerolineae, Plasticicumulans and Elusimicrobia were responsible for denitrification. Cultivable nitrobacter and denitrifiers were isolated from the activated sludge, but they did not participate in the nitrogen-incorporating based on the SIP results. Additionally, the molecular ecological network analysis indicated that the SIP-identified nitrogen-incorporating bacteria exhibited more links with the intra-community, which might explain the failure of isolating these active bacteria. These findings add understanding of the removal of nitrogenous compounds drived by nitrogen-incorporating bacteria in actual wastewater treatment process.

Use of an in situ thermoelectric generator for electric field-assisted aerobic composting.

Electric field-assisted aerobic composting (EAAC) is a simple and effective process. To further improve the EAAC process and make good use of waste heat during composting, in this study, we designed an in situ thermoelectric generator using thermoelectric sheets and applied it for EAAC. The findings show that the voltage generated was 8.8-18.6 V, and the maximum power was over 7 W. A direct current-to-direct current (DC-DC) voltage converter was used to stabilize the output at 6.0 V. Self-powered EAAC (sp-EAAC) enhanced compost maturity compared to conventional aerobic composting (CAC). The germination index reached 118% and 88% in sp-EAAC and CAC, respectively, at the end of composting. This work verified that the temperature gap between compost and the environment could be used for the EAAC process, opening a new way to recover waste heat during aerobic composting and accelerate compost maturity.

Nitrification plays a key role in N2O emission in electric-field assisted aerobic composting.

Nitrous oxide (N2O) emission is a serious environmental problem in composting. Previous studies have indicated that electric field assistance results in lower N2O emissions in aerobic composting; however, the exact mechanisms involved in electric-field assisted aerobic composting (EAAC) are not clear. In this study, the biological N transformation processes and the N-associated genes were investigated. The results demonstrated that electric field application inhibited nitrification, weakened the nitrifying functional genes (the hao and nxrA genes declined maximally by 86% and 86.8%, respectively), and increased the N2O consumption-related gene (nosZ) by a maximum factor of 2.76 compared with that in CAC. The correlation analysis demonstrated that nitrification was the main source of N2O emission in EAAC. The findings imply that EAAC is a promising process for mitigating N2O emission at the source during aerobic composting.

Hierarchically structured carbon materials derived from lotus leaves as efficient electrocatalyst for microbial energy harvesting.

Developing a highly efficient, cost-effective, easily scalable and sustainable cathode for oxygen reduction reaction (ORR) is a crucial challenge in terms of future "green" energy conversion technologies, e.g., microbial fuel cells (MFCs). In this study, a natural and widely available lotus leaf with intrinsically hierarchical structure was employed to serve as the single precursor to prepare the catalyst applied as the MFC cathode. The hierarchically particle-coated bio­carbon was self-constructed from the lotus leaf, which yielded a large specific surface area, highly porous structure and superhydrophobicity via facile pyrolysis coupling hydrothermal activation by ZnCl2/(NH4)2SO4. Electrochemical evaluation demonstrated that these natural leaf-derived carbons have an efficient ORR activity. Specifically, the HC-900 catalyst with hydrothermal activation achieved an onset potential of -0.015 V vs. Ag/AgCl, which was comparable to the commercial Pt/C catalyst (-0.010 V vs. Ag/AgCl) and was more efficient than the DC-900 catalyst through direct pyrolysis. Furthermore, the HC-900 catalyst achieved an outstanding ORR activity via a one-step and four-electron pathway, exhibiting a potential alternative to Pt/C as electrocatalyst in ORR, due to its better long-term durability and methanol resistance. Additionally, the HC-900 catalyst was applied as an effective electrocatalytic cathode in an MFC system with a maximum power density of 511.5 ±â€¯25.6 mW⋅m-2, exhibiting a superior energy harvesting capacity to the Pt/C cathode.