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1.
J Biol Chem ; 295(11): 3506-3517, 2020 03 13.
Artículo en Inglés | MEDLINE | ID: mdl-32019868

RESUMEN

Pseudomonas aeruginosa uses a type III secretion system (T3SS) to inject cytotoxic effector proteins into host cells. The promiscuous nucleotidyl cyclase, exoenzyme Y (ExoY), is one of the most common effectors found in clinical P. aeruginosa isolates. Recent studies have revealed that the nucleotidyl cyclase activity of ExoY is stimulated by actin filaments (F-actin) and that ExoY alters actin cytoskeleton dynamics in vitro, via an unknown mechanism. The actin cytoskeleton plays an important role in numerous key biological processes and is targeted by many pathogens to gain competitive advantages. We utilized total internal reflection fluorescence microscopy, bulk actin assays, and EM to investigate how ExoY impacts actin dynamics. We found that ExoY can directly bundle actin filaments with high affinity, comparable with eukaryotic F-actin-bundling proteins, such as fimbrin. Of note, ExoY enzymatic activity was not required for F-actin bundling. Bundling is known to require multiple actin-binding sites, yet small-angle X-ray scattering experiments revealed that ExoY is a monomer in solution, and previous data suggested that ExoY possesses only one actin-binding site. We therefore hypothesized that ExoY oligomerizes in response to F-actin binding and have used the ExoY structure to construct a dimer-based structural model for the ExoY-F-actin complex. Subsequent mutational analyses suggested that the ExoY oligomerization interface plays a crucial role in mediating F-actin bundling. Our results indicate that ExoY represents a new class of actin-binding proteins that modulate the actin cytoskeleton both directly, via F-actin bundling, and indirectly, via actin-activated nucleotidyl cyclase activity.


Asunto(s)
Citoesqueleto de Actina/metabolismo , Proteínas Bacterianas/metabolismo , Glucosiltransferasas/metabolismo , Pseudomonas aeruginosa/enzimología , Citoesqueleto de Actina/ultraestructura , Factores Despolimerizantes de la Actina/metabolismo , Actinas/química , Actinas/metabolismo , Actinas/ultraestructura , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/ultraestructura , Glucosiltransferasas/química , Glucosiltransferasas/genética , Glucosiltransferasas/ultraestructura , Glicoproteínas de Membrana/metabolismo , Proteínas de Microfilamentos/metabolismo , Modelos Moleculares , Mutación/genética , Unión Proteica , Multimerización de Proteína
2.
Nature ; 511(7507): 94-8, 2014 Jul 03.
Artículo en Inglés | MEDLINE | ID: mdl-24847884

RESUMEN

Despite decades of speculation that inhibiting endogenous insulin degradation might treat type-2 diabetes, and the identification of IDE (insulin-degrading enzyme) as a diabetes susceptibility gene, the relationship between the activity of the zinc metalloprotein IDE and glucose homeostasis remains unclear. Although Ide(-/-) mice have elevated insulin levels, they exhibit impaired, rather than improved, glucose tolerance that may arise from compensatory insulin signalling dysfunction. IDE inhibitors that are active in vivo are therefore needed to elucidate IDE's physiological roles and to determine its potential to serve as a target for the treatment of diabetes. Here we report the discovery of a physiologically active IDE inhibitor identified from a DNA-templated macrocycle library. An X-ray structure of the macrocycle bound to IDE reveals that it engages a binding pocket away from the catalytic site, which explains its remarkable selectivity. Treatment of lean and obese mice with this inhibitor shows that IDE regulates the abundance and signalling of glucagon and amylin, in addition to that of insulin. Under physiological conditions that augment insulin and amylin levels, such as oral glucose administration, acute IDE inhibition leads to substantially improved glucose tolerance and slower gastric emptying. These findings demonstrate the feasibility of modulating IDE activity as a new therapeutic strategy to treat type-2 diabetes and expand our understanding of the roles of IDE in glucose and hormone regulation.


Asunto(s)
Glucagón/metabolismo , Hipoglucemiantes/farmacología , Insulina/metabolismo , Insulisina/antagonistas & inhibidores , Polipéptido Amiloide de los Islotes Pancreáticos/metabolismo , Compuestos Macrocíclicos/farmacología , Animales , Sitios de Unión , Glucemia/metabolismo , Dominio Catalítico , Diabetes Mellitus Tipo 2/tratamiento farmacológico , Diabetes Mellitus Tipo 2/genética , Modelos Animales de Enfermedad , Vaciamiento Gástrico/efectos de los fármacos , Predisposición Genética a la Enfermedad , Prueba de Tolerancia a la Glucosa , Hipoglucemiantes/química , Hipoglucemiantes/uso terapéutico , Insulisina/química , Insulisina/genética , Insulisina/metabolismo , Compuestos Macrocíclicos/química , Compuestos Macrocíclicos/uso terapéutico , Masculino , Ratones , Ratones Endogámicos C57BL , Modelos Moleculares , Obesidad/tratamiento farmacológico , Obesidad/metabolismo , Transducción de Señal/efectos de los fármacos , Delgadez/tratamiento farmacológico , Delgadez/metabolismo
3.
Biochemistry ; 58(27): 2996-3004, 2019 07 09.
Artículo en Inglés | MEDLINE | ID: mdl-31243996

RESUMEN

Anthrax, a lethal, weaponizable disease caused by Bacillus anthracis, acts through exotoxins that are primary mediators of systemic toxicity and also targets for neutralization by passive immunotherapy. The ease of engineering B. anthracis strains resistant to established therapy and the historic use of the microbe in bioterrorism present a compelling test case for platforms that permit the rapid and modular development of neutralizing agents. In vitro antigen-binding fragment (Fab) selection offers the advantages of speed, sequence level molecular control, and engineering flexibility compared to traditional monoclonal antibody pipelines. By screening an unbiased, chemically synthetic phage Fab library and characterizing hits in cell-based assays, we identified two high-affinity neutralizing Fabs, A4 and B7, against anthrax edema factor (EF), a key mediator of anthrax pathogenesis. Engineered homodimers of these Fabs exhibited potency comparable to that of the best reported neutralizing monoclonal antibody against EF at preventing EF-induced cyclic AMP production. Using internalization assays in COS cells, B7 was found to block steps prior to EF internalization. This work demonstrates the efficacy of synthetic alternatives to traditional antibody therapeutics against anthrax while also demonstrating a broadly generalizable, rapid, and modular screening pipeline for neutralizing antibody generation.


Asunto(s)
Carbunco/tratamiento farmacológico , Anticuerpos Neutralizantes/farmacología , Bacillus anthracis/efectos de los fármacos , Toxinas Bacterianas/antagonistas & inhibidores , Fragmentos Fab de Inmunoglobulinas/farmacología , Secuencia de Aminoácidos , Animales , Carbunco/metabolismo , Carbunco/microbiología , Anticuerpos Neutralizantes/química , Antígenos Bacterianos/metabolismo , Bacillus anthracis/fisiología , Toxinas Bacterianas/metabolismo , Células CHO , Células COS , Línea Celular , Chlorocebus aethiops , Cricetulus , AMP Cíclico/metabolismo , Humanos , Fragmentos Fab de Inmunoglobulinas/química , Ratones , Multimerización de Proteína
4.
Proc Natl Acad Sci U S A ; 113(18): 5000-5, 2016 May 03.
Artículo en Inglés | MEDLINE | ID: mdl-27091995

RESUMEN

CC chemokine ligand 5 (CCL5) and CCL3 are critical for immune surveillance and inflammation. Consequently, they are linked to the pathogenesis of many inflammatory conditions and are therapeutic targets. Oligomerization and glycosaminoglycan (GAG) binding of CCL5 and CCL3 are vital for the functions of these chemokines. Our structural and biophysical analyses of human CCL5 reveal that CCL5 oligomerization is a polymerization process in which CCL5 forms rod-shaped, double-helical oligomers. This CCL5 structure explains mutational data and offers a unified mechanism for CCL3, CCL4, and CCL5 assembly into high-molecular-weight, polydisperse oligomers. A conserved, positively charged BBXB motif is key for the binding of CC chemokines to GAG. However, this motif is partially buried when CCL3, CCL4, and CCL5 are oligomerized; thus, the mechanism by which GAG binds these chemokine oligomers has been elusive. Our structures of GAG-bound CCL5 and CCL3 oligomers reveal that these chemokine oligomers have distinct GAG-binding mechanisms. The CCL5 oligomer uses another positively charged and fully exposed motif, KKWVR, in GAG binding. However, residues from two partially buried BBXB motifs along with other residues combine to form a GAG-binding groove in the CCL3 oligomer. The N termini of CC chemokines are shown to be involved in receptor binding and oligomerization. We also report an alternative CCL3 oligomer structure that reveals how conformational changes in CCL3 N termini profoundly alter its surface properties and dimer-dimer interactions to affect GAG binding and oligomerization. Such complexity in oligomerization and GAG binding enables intricate, physiologically relevant regulation of CC chemokine functions.


Asunto(s)
Quimiocina CCL3/química , Quimiocina CCL3/ultraestructura , Quimiocina CCL5/química , Quimiocina CCL5/ultraestructura , Glicosaminoglicanos/química , Sitios de Unión , Dimerización , Humanos , Unión Proteica , Conformación Proteica , Relación Estructura-Actividad
5.
J Chem Inf Model ; 58(9): 1926-1934, 2018 09 24.
Artículo en Inglés | MEDLINE | ID: mdl-30133282

RESUMEN

Insulin degrading enzyme (IDE), a metalloprotease that degrades amyloid-ß (Aß) peptides and insulin, is associated with Alzheimer's disease and diabetes. The mechanism of IDE catalyzed degrading of Aß peptides, which is of fundamental importance in the design of therapeutic methods for Alzheimer's disease, has not been fully understood. In this work, combined quantum mechanics and molecular mechanics (QM/MM) style Møller-Plesset second order perturbation theory (MP2) geometry optimization calculations are performed to investigate the catalytic mechanism of the Aß40 Phe19-Phe20 peptide bond cleavage by human IDE. The analyses using QM/MM MP2 optimization suggest that a neutral water molecule is at the active site of the enzyme-substrate (ES) complex. The water molecule is in hydrogen bonding with the nearby anionic Glu111 of IDE but not directly bound to the catalytic Zn ion. This is confirmed by QM/MM DFTB3 molecular dynamics simulation. Our studies also reveal that the hydrolysis of the Aß40 Phe19-Phe20 peptide bond by IDE consists of four key steps. The neutral water is first activated by moving toward and binding to the Zn ion. A gem-diol intermediate is then formed by the activated neutral water molecule attacking the C atom of the Phe19-Phe20 peptide bond. The next is the protonation of the N atom of Phe19-Phe20 peptide bond to form an intermediate with an elongated C-N bond. The final step is the breaking of the Phe19-Phe20 C-N bond. The final step is the rate-determining step with a calculated Gibbs free energy of activation of 17.34 kcal/mol, in good agreement with the experimental value 16.7 kcal/mol. This mechanism provides the basis for the design of biochemical methods to modulate the activity of IDE in humans.


Asunto(s)
Péptidos beta-Amiloides/química , Insulisina/metabolismo , Teoría Cuántica , Catálisis , Cinética , Modelos Moleculares , Unión Proteica , Conformación Proteica , Proteolisis , Programas Informáticos , Agua , Zinc
6.
Proc Natl Acad Sci U S A ; 110(34): 13827-32, 2013 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-23922390

RESUMEN

Insulin-degrading enzyme (IDE) selectively degrades the monomer of amyloidogenic peptides and contributes to clearance of amyloid ß (Aß). Thus, IDE retards the progression of Alzheimer's disease. IDE possesses an enclosed catalytic chamber that engulfs and degrades its peptide substrates; however, the molecular mechanism of IDE function, including substrate access to the chamber and recognition, remains elusive. Here, we captured a unique IDE conformation by using a synthetic antibody fragment as a crystallization chaperone. An unexpected displacement of a door subdomain creates an ~18-Å opening to the chamber. This swinging-door mechanism permits the entry of short peptides into the catalytic chamber and disrupts the catalytic site within IDE door subdomain. Given the propensity of amyloidogenic peptides to convert into ß-strands for their polymerization into amyloid fibrils, they also use such ß-strands to stabilize the disrupted catalytic site resided at IDE door subdomain for their degradation by IDE. Thus, action of the swinging door allows IDE to recognize amyloidogenicity by substrate-induced stabilization of the IDE catalytic cleft. Small angle X-ray scattering (SAXS) analysis revealed that IDE exists as a mixture of closed and open states. These open states, which are distinct from the swinging door state, permit entry of larger substrates (e.g., Aß, insulin) to the chamber and are preferred in solution. Mutational studies confirmed the critical roles of the door subdomain and hinge loop joining the N- and C-terminal halves of IDE for catalysis. Together, our data provide insights into the conformational changes of IDE that govern the selective destruction of amyloidogenic peptides.


Asunto(s)
Proteínas Amiloidogénicas/metabolismo , Insulisina/química , Insulisina/metabolismo , Modelos Moleculares , Conformación Proteica , Proteolisis , Dominio Catalítico/genética , Dominio Catalítico/fisiología , Cristalización , Análisis Mutacional de ADN , Escherichia coli , Humanos , Fragmentos Fab de Inmunoglobulinas/metabolismo , Insulisina/genética , Mutagénesis Sitio-Dirigida , Dispersión del Ángulo Pequeño , Resonancia por Plasmón de Superficie
7.
Dev Biol ; 392(2): 256-65, 2014 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-24886829

RESUMEN

Class I Basic Helix-Loop-Helix (bHLH) transcription factors form homodimers or heterodimers with class II bHLH proteins. While bHLH heterodimers are known to have diverse roles, little is known about the role of class I homodimers. In this manuscript, we show that a linked dimer of Daughterless (Da), the only Drosophila class I bHLH protein, activates Atonal (Ato) expression and retinal neuron differentiation synergistically with the retinal determination factor Eyeless (Ey). The HLH protein Extramacrocheate (Emc), which forms heterodimer with Da, antagonizes the synergistic activation from Da but not the Da-Da linked dimer with Ey. We show that Da directly interacts with Ey and promotes Ey binding to the Ey binding site in the Ato 3׳ enhancer. Interestingly, the Ey binding site in the Ato 3׳ enhancer contains an embedded E-box that is also required for the synergistic activation by Ey and Da. Finally we show that mammalian homologs of Ey and Da can functionally replace their Drosophila counterparts to synergistically activate the Ato enhancer, suggesting that the observed function is evolutionary conserved.


Asunto(s)
Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico/metabolismo , Diferenciación Celular/fisiología , Proteínas de Unión al ADN/metabolismo , Proteínas de Drosophila/metabolismo , Drosophila/embriología , Regulación del Desarrollo de la Expresión Génica/fisiología , Modelos Moleculares , Proteínas del Tejido Nervioso/metabolismo , Neuronas Retinianas/fisiología , Animales , Animales Modificados Genéticamente , Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico/química , Inmunoprecipitación de Cromatina , Cartilla de ADN/genética , Proteínas de Unión al ADN/química , Dimerización , Proteínas de Drosophila/química , Discos Imaginales/embriología , Discos Imaginales/metabolismo , Inmunohistoquímica , Microscopía Fluorescente , Neuronas Retinianas/metabolismo
8.
EMBO J ; 29(23): 3952-66, 2010 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-20959807

RESUMEN

Macrophage inflammatory protein-1 (MIP-1), MIP-1α (CCL3) and MIP-1ß (CCL4) are chemokines crucial for immune responses towards infection and inflammation. Both MIP-1α and MIP-1ß form high-molecular-weight aggregates. Our crystal structures reveal that MIP-1 aggregation is a polymerization process and human MIP-1α and MIP-1ß form rod-shaped, double-helical polymers. Biophysical analyses and mathematical modelling show that MIP-1 reversibly forms a polydisperse distribution of rod-shaped polymers in solution. Polymerization buries receptor-binding sites of MIP-1α, thus depolymerization mutations enhance MIP-1α to arrest monocytes onto activated human endothelium. However, same depolymerization mutations render MIP-1α ineffective in mouse peritoneal cell recruitment. Mathematical modelling reveals that, for a long-range chemotaxis of MIP-1, polymerization could protect MIP-1 from proteases that selectively degrade monomeric MIP-1. Insulin-degrading enzyme (IDE) is identified as such a protease and decreased expression of IDE leads to elevated MIP-1 levels in microglial cells. Our structural and proteomic studies offer a molecular basis for selective degradation of MIP-1. The regulated MIP-1 polymerization and selective inactivation of MIP-1 monomers by IDE could aid in controlling the MIP-1 chemotactic gradient for immune surveillance.


Asunto(s)
Quimiocina CCL3/química , Quimiocina CCL3/metabolismo , Quimiocina CCL4/química , Quimiocina CCL4/metabolismo , Insulisina/metabolismo , Secuencia de Aminoácidos , Animales , Línea Celular , Quimiocina CCL3/genética , Quimiocina CCL3/inmunología , Quimiocina CCL4/genética , Quimiocina CCL4/inmunología , Cristalografía por Rayos X , Humanos , Insulisina/química , Proteínas Inflamatorias de Macrófagos/química , Proteínas Inflamatorias de Macrófagos/genética , Proteínas Inflamatorias de Macrófagos/inmunología , Proteínas Inflamatorias de Macrófagos/metabolismo , Masculino , Ratones , Ratones Endogámicos C57BL , Modelos Moleculares , Datos de Secuencia Molecular , Mutación , Polimerizacion , Unión Proteica , Conformación Proteica , Multimerización de Proteína
9.
Biochemistry ; 52(15): 2672-82, 2013 Apr 16.
Artículo en Inglés | MEDLINE | ID: mdl-23480863

RESUMEN

The two-metal catalysis by the adenylyl cyclase domain of the anthrax edema factor toxin was simulated using the empirical valence bond (EVB) quantum mechanical/molecular mechanical approach. These calculations considered the energetics of the nucleophile deprotonation and the formation of a new P-O bond in aqueous solution and in the enzyme-substrate complex present in the crystal structure models of the reactant and product states of the reaction. Our calculations support a reaction pathway that involves metal-assisted transfer of a proton from the nucleophile to the bulk aqueous solution followed by subsequent formation of an unstable pentavalent intermediate that decomposes into cAMP and pyrophosphate (PPi). This pathway involves ligand exchange in the first solvation sphere of the catalytic metal. At 12.9 kcal/mol, the barrier for the last step of the reaction, the cleavage of the P-O bond to PPi, corresponds to the highest point on the free energy profile for this reaction pathway. However, this energy is too close to the value of 11.4 kcal/mol calculated for the barrier of the nucleophilic attack step to reach a definitive conclusion about the rate-limiting step. The calculated reaction mechanism is supported by reasonable agreement between the experimental and calculated catalytic rate constant decrease caused by the mutation of the active site lysine 346 to arginine.


Asunto(s)
Adenosina Trifosfato/metabolismo , Antígenos Bacterianos/química , Antígenos Bacterianos/metabolismo , Toxinas Bacterianas/química , Toxinas Bacterianas/metabolismo , AMP Cíclico/metabolismo , Sitios de Unión , Dominio Catalítico , Modelos Químicos , Simulación de Dinámica Molecular , Mutación , Soluciones
10.
Biochemistry ; 52(24): 4184-92, 2013 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-23697661

RESUMEN

Extracellular ubiquitin has recently been described as a CXC chemokine receptor (CXCR) 4 agonist. Studies on the structure-function relationship suggested that the C-terminus of ubiquitin facilitates CXCR4 activation. It remains unknown, however, whether C-terminal processing of ubiquitin could be biologically relevant and whether modifications of the ubiquitin C-terminus can modulate CXCR4 activation. We show that C-terminal truncated ubiquitin antagonizes ubiquitin and stromal cell-derived factor (SDF)-1α induced effects on cell signaling and function. Reduction of cell surface expression of insulin degrading enzyme (IDE), which cleaves the C-terminal di-Gly of ubiquitin, enhances ubiquitin induced reduction of cAMP levels in BV2 and THP-1 cells, but does not influence changes in cAMP levels in response to SDF-1α. Reduction of cell surface IDE expression in THP-1 cells also increases the chemotactic activity of ubiquitin. As compared with native ubiquitin, C-terminal Tyr extension of ubiquitin results in reduced CXCR4 mediated effects on cellular cAMP levels and abolishes chemotactic activity. Replacement of C-terminal di-Gly of ubiquitin with di-Val or di-Arg enhances CXCR4 mediated effects on cAMP levels and the di-Arg substitution exerts increased chemotactic activity, when compared with wild type ubiquitin. The chemotactic activities of the di-Val and di-Arg mutants and their effects on cAMP levels can be antagonized with C-terminal truncated ubiquitin. These data suggest that the development of CXCR4 ligands with enhanced agonist activities is possible and that C-terminal processing of ubiquitin could constitute a biological mechanism, which regulates termination of receptor signaling.


Asunto(s)
Receptores CXCR4/química , Ubiquitina/química , Animales , Línea Celular , Membrana Celular/metabolismo , Separación Celular , Quimiocina CXCL12/metabolismo , AMP Cíclico/metabolismo , Citometría de Flujo , Silenciador del Gen , Humanos , Insulina/química , Ratones , Unión Proteica , Estructura Terciaria de Proteína , ARN Interferente Pequeño/metabolismo , Receptores CXCR4/metabolismo , Transducción de Señal , Relación Estructura-Actividad , Tirosina/química
11.
Proc Natl Acad Sci U S A ; 107(25): 11277-82, 2010 Jun 22.
Artículo en Inglés | MEDLINE | ID: mdl-20534570

RESUMEN

Allostery plays a key role in the regulation of the activity and function of many biomolecules. And although many ligands act through allostery, no systematic use is made of it in drug design strategies. Here we describe a procedure for identifying the regions of a protein that can be used to control its activity through allostery. This procedure is based on the construction of a plausible conformational path, which describes protein transition between known active and inactive conformations. The path is calculated by using a framework approach that steers and markedly improves the conjugate peak refinement method. The evolution of conformations along this path was used to identify a putative allosteric site that could regulate activation of Bacillus anthracis adenylyl cyclase toxin (EF) by calmodulin. Conformations of the allosteric site at different steps along the path from the inactive (free) to the active (bound to calmodulin) forms of EF were used to perform virtual screenings and propose candidate EF inhibitors. Several candidates then proved to inhibit calmodulin-induced activation in an in vitro assay. The most potent compound fully inhibited EF at a concentration of 10 microM. The compounds also inhibited the related adenylyl cyclase toxin from Bordetella pertussis (CyaA). The specific homology between the putative allosteric sites in both toxins supports that these pockets are the actual binding sites of the selected inhibitors.


Asunto(s)
Antígenos Bacterianos/metabolismo , Bacillus anthracis/metabolismo , Toxinas Bacterianas/metabolismo , Calmodulina/química , Sitio Alostérico , Toxinas Bacterianas/antagonistas & inhibidores , Bordetella pertussis/metabolismo , Química Farmacéutica/métodos , Biología Computacional/métodos , Bases de Datos de Proteínas , Diseño de Fármacos , Humanos , Modelos Moleculares , Conformación Proteica , Estructura Terciaria de Proteína
12.
J Biol Chem ; 286(51): 44145-44152, 2011 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-22039044

RESUMEN

Ubiquitin, a post-translational protein modifier inside the cell, functions as a CXC chemokine receptor (CXCR) 4 agonist outside the cell. However, the structural determinants of the interaction between extracellular ubiquitin and CXCR4 remain unknown. Utilizing C-terminal truncated ubiquitin and ubiquitin mutants, in which surface residues that are known to interact with ubiquitin binding domains in interacting proteins are mutated (Phe-4, Leu-8, Ile-44, Asp-58, Val-70), we provide evidence that the ubiquitin-CXCR4 interaction follows a two-site binding mechanism in which the hydrophobic surfaces surrounding Phe-4 and Val-70 are important for receptor binding, whereas the flexible C terminus facilitates receptor activation. Based on these findings and the available crystal structures, we then modeled the ubiquitin-CXCR4 interface with the RosettaDock software followed by small manual adjustments, which were guided by charge complementarity and anticipation of a conformational switch of CXCR4 upon activation. This model suggests three residues of CXCR4 (Phe-29, Phe-189, Lys-271) as potential interaction sites. Binding studies with HEK293 cells overexpressing wild type and CXCR4 after site-directed mutagenesis confirm that these residues are important for ubiquitin binding but that they do not contribute to the binding of stromal cell-derived factor 1α. Our findings suggest that the structural determinants of the CXCR4 agonist activity of ubiquitin mimic the typical structure-function relationship of chemokines. Furthermore, we provide evidence for separate and specific ligand binding sites on CXCR4. As exogenous ubiquitin has been shown to possess therapeutic potential, our findings are expected to facilitate the structure-based design of new compounds with ubiquitin-mimetic actions on CXCR4.


Asunto(s)
Receptores CXCR4/metabolismo , Ubiquitina/química , Separación Celular , Quimiocina CXCL12/metabolismo , Biología Computacional/métodos , Citometría de Flujo , Células HEK293 , Humanos , Ligandos , Modelos Moleculares , Conformación Molecular , Unión Proteica , Estructura Terciaria de Proteína , Receptores Acoplados a Proteínas G/metabolismo , Transducción de Señal , Relación Estructura-Actividad
13.
J Biol Chem ; 286(6): 4670-9, 2011 Feb 11.
Artículo en Inglés | MEDLINE | ID: mdl-21098034

RESUMEN

Natriuretic peptides (NPs) are cyclic vasoactive peptide hormones with high therapeutic potential. Three distinct NPs (ANP, BNP, and CNP) can selectively activate natriuretic peptide receptors, NPR-A and NPR-B, raising the cyclic GMP (cGMP) levels. Insulin-degrading enzyme (IDE) was found to rapidly cleave ANP, but the functional consequences of such cleavages in the cellular environment and the molecular mechanism of recognition and cleavage remain unknown. Here, we show that reducing expression levels of IDE profoundly alters the response of NPR-A and NPR-B to the stimulation of ANP, BNP, and CNP in cultured cells. IDE rapidly cleaves ANP and CNP, thus inactivating their ability to raise intracellular cGMP. Conversely, reduced IDE expression enhances the stimulation of NPR-A and NPR-B by ANP and CNP, respectively. Instead of proteolytic inactivation, IDE cleavage can lead to hyperactivation of BNP toward NPR-A. Conversely, decreasing IDE expression reduces BNP-mediated signaling. Additionally, the cleavages of ANP and BNP by IDE render them active with NPR-B and a reduction of IDE expression diminishes the ability of ANP and BNP to stimulate NPR-B. Our kinetic and crystallographic analyses offer the molecular basis for the selective degradation of NPs and their variants by IDE. Furthermore, our studies reveal how IDE utilizes its catalytic chamber and exosite to engulf and bind up to two NPs leading to biased stochastic, non-sequential cleavages and the ability of IDE to switch its substrate selectivity. Thus, the evolutionarily conserved IDE may play a key role in modulating and reshaping the strength and duration of NP-mediated signaling.


Asunto(s)
Regulación Enzimológica de la Expresión Génica/fisiología , Insulisina/química , Insulisina/metabolismo , Péptidos Natriuréticos/metabolismo , Transducción de Señal/fisiología , Catálisis , Cristalografía por Rayos X , GMP Cíclico/genética , GMP Cíclico/metabolismo , Células HEK293 , Humanos , Insulisina/genética , Péptidos Natriuréticos/genética , Unión Proteica , Estructura Terciaria de Proteína
14.
Am J Pathol ; 178(6): 2523-35, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21641378

RESUMEN

Powerful noninvasive imaging technologies enable real-time tracking of pathogen-host interactions in vivo, giving access to previously elusive events. We visualized the interactions between wild-type Bacillus anthracis and its host during a spore infection through bioluminescence imaging coupled with histology. We show that edema toxin plays a central role in virulence in guinea pigs and during inhalational infection in mice. Edema toxin (ET), but not lethal toxin (LT), markedly modified the patterns of bacterial dissemination leading, to apparent direct dissemination to the spleen and provoking apoptosis of lymphoid cells. Each toxin alone provoked particular histological lesions in the spleen. When ET and LT are produced together during infection, a specific temporal pattern of lesion developed, with early lesions typical of LT, followed at a later stage by lesions typical of ET. Our study provides new insights into the complex spatial and temporal effects of B. anthracis toxins in the infected host, suggesting a greater role than previously suspected for ET in anthrax and suggesting that therapeutic targeting of ET contributes to protection.


Asunto(s)
Carbunco/microbiología , Carbunco/patología , Antígenos Bacterianos/inmunología , Toxinas Bacterianas/inmunología , Diagnóstico por Imagen/métodos , Factores de Virulencia/inmunología , Animales , Carbunco/prevención & control , Apoptosis , Bacillus anthracis/patogenicidad , Femenino , Cobayas/microbiología , Exposición por Inhalación , Luminiscencia , Ratones , Ratones Endogámicos BALB C , Nasofaringe/microbiología , Nasofaringe/patología , Pruebas de Neutralización , Piel/microbiología , Piel/patología , Bazo/microbiología , Bazo/patología , Factores de Tiempo
15.
J Immunol ; 185(10): 5943-52, 2010 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-20952678

RESUMEN

We have shown that intranasal coapplication of Bacillus anthracis protective Ag (PA) together with a B. anthracis edema factor (EF) mutant having reduced adenylate cyclase activity (i.e., EF-S414N) enhances anti-PA Ab responses, but also acts as a mucosal adjuvant for coadministered unrelated Ags. To elucidate the role of edema toxin (EdTx) components in its adjuvanticity, we examined how a PA mutant lacking the ability to bind EF (PA-U7) or another mutant that allows the cellular uptake of EF, but fails to efficiently mediate its translocation into the cytosol (PA-dFF), would affect EdTx-induced adaptive immunity. Native EdTx promotes costimulatory molecule expression by macrophages and B lymphocytes, and a broad spectrum of cytokine responses by cervical lymph node cells in vitro. These effects were reduced or abrogated when cells were treated with EF plus PA-dFF, or PA-U7 instead of PA. We also intranasally immunized groups of mice with a recombinant fusion protein of Yersinia pestis F1 and LcrV Ags (F1-V) together with EdTx variants consisting of wild-type or mutants PA and EF. Analysis of serum and mucosal Ab responses against F1-V or EdTx components (i.e., PA and EF) revealed no adjuvant activity in mice that received PA-U7 instead of PA. In contrast, coimmunization with PA-dFF enhanced serum Ab responses. Finally, immunization with native PA and an EF mutant lacking adenylate cyclase activity (EF-K346R) failed to enhance Ab responses. In summary, a fully functional PA and a minimum of adenylate cyclase activity are needed for EdTx to act as a mucosal adjuvant.


Asunto(s)
Adyuvantes Inmunológicos/metabolismo , Carbunco/inmunología , Antígenos Bacterianos/inmunología , Toxinas Bacterianas/inmunología , Adenilil Ciclasas/metabolismo , Administración Intranasal , Animales , Carbunco/metabolismo , Vacunas contra el Carbunco/inmunología , Antígenos Bacterianos/administración & dosificación , Antígenos Bacterianos/metabolismo , Bacillus anthracis/inmunología , Toxinas Bacterianas/metabolismo , Separación Celular , Femenino , Citometría de Flujo , Inmunidad Mucosa/inmunología , Ratones , Ratones Endogámicos C57BL , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
16.
Nature ; 443(7113): 870-4, 2006 Oct 19.
Artículo en Inglés | MEDLINE | ID: mdl-17051221

RESUMEN

Insulin-degrading enzyme (IDE), a Zn2+-metalloprotease, is involved in the clearance of insulin and amyloid-beta (refs 1-3). Loss-of-function mutations of IDE in rodents cause glucose intolerance and cerebral accumulation of amyloid-beta, whereas enhanced IDE activity effectively reduces brain amyloid-beta (refs 4-7). Here we report structures of human IDE in complex with four substrates (insulin B chain, amyloid-beta peptide (1-40), amylin and glucagon). The amino- and carboxy-terminal domains of IDE (IDE-N and IDE-C, respectively) form an enclosed cage just large enough to encapsulate insulin. Extensive contacts between IDE-N and IDE-C keep the degradation chamber of IDE inaccessible to substrates. Repositioning of the IDE domains enables substrate access to the catalytic cavity. IDE uses size and charge distribution of the substrate-binding cavity selectively to entrap structurally diverse polypeptides. The enclosed substrate undergoes conformational changes to form beta-sheets with two discrete regions of IDE for its degradation. Consistent with this model, mutations disrupting the contacts between IDE-N and IDE-C increase IDE catalytic activity 40-fold. The molecular basis for substrate recognition and allosteric regulation of IDE could aid in designing IDE-based therapies to control cerebral amyloid-beta and blood sugar concentrations.


Asunto(s)
Insulina/química , Insulina/metabolismo , Insulisina/química , Insulisina/metabolismo , Secuencia de Aminoácidos , Amiloide/química , Amiloide/metabolismo , Péptidos beta-Amiloides/química , Péptidos beta-Amiloides/metabolismo , Cristalografía por Rayos X , Glucagón/química , Glucagón/metabolismo , Humanos , Polipéptido Amiloide de los Islotes Pancreáticos , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Terciaria de Proteína , Especificidad por Sustrato
17.
Nat Commun ; 13(1): 1833, 2022 04 05.
Artículo en Inglés | MEDLINE | ID: mdl-35383169

RESUMEN

Presequence protease (PreP), a 117 kDa mitochondrial M16C metalloprotease vital for mitochondrial proteostasis, degrades presequence peptides cleaved off from nuclear-encoded proteins and other aggregation-prone peptides, such as amyloid ß (Aß). PreP structures have only been determined in a closed conformation; thus, the mechanisms of substrate binding and selectivity remain elusive. Here, we leverage advanced vitrification techniques to overcome the preferential denaturation of one of two ~55 kDa homologous domains of PreP caused by air-water interface adsorption. Thereby, we elucidate cryoEM structures of three apo-PreP open states along with Aß- and citrate synthase presequence-bound PreP at 3.3-4.6 Å resolution. Together with integrative biophysical and pharmacological approaches, these structures reveal the key stages of the PreP catalytic cycle and how the binding of substrates or PreP inhibitor drives a rigid body motion of the protein for substrate binding and catalysis. Together, our studies provide key mechanistic insights into M16C metalloproteases for future therapeutic innovations.


Asunto(s)
Péptidos beta-Amiloides , Mitocondrias , Péptidos beta-Amiloides/metabolismo , Microscopía por Crioelectrón , Humanos , Metaloproteasas/metabolismo , Mitocondrias/metabolismo , Conformación Molecular , Conformación Proteica , Especificidad por Sustrato
18.
J Exp Med ; 201(3): 325-31, 2005 Feb 07.
Artículo en Inglés | MEDLINE | ID: mdl-15699068

RESUMEN

Anthrax is an infection caused by pathogenic strains of Bacillus anthracis, which secretes a three-component toxic complex consisting of protective antigen (PA), edema factor (EF), and lethal factor (LF). PA forms binary complexes with either LF or EF and mediates their entry into host cells. Although the initial phases of bacterial growth occur in the lymph node, the host fails to mount an effective immune response. Here, we show that LT and ET are potent suppressors of human T cell activation and proliferation triggered through the antigen receptor. Both LT and ET inhibit the mitogen-activated protein and stress kinase pathways, and both toxins inhibit activation of NFAT and AP-1, two transcription factors essential for cytokine gene expression. These data identify a novel strategy of immune evasion by B. anthracis, based on both effector subunits of the toxic complex, and targeted to a key cellular component of adaptive immunity.


Asunto(s)
Antígenos Bacterianos/inmunología , Antígenos Bacterianos/metabolismo , Toxinas Bacterianas/inmunología , Activación de Linfocitos , Receptores de Antígenos/metabolismo , Transducción de Señal/fisiología , Linfocitos T/inmunología , Carbunco/inmunología , Antígenos CD/inmunología , Bacillus anthracis/metabolismo , Línea Celular , Humanos , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
19.
J Pharmacol Exp Ther ; 336(1): 104-15, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20962032

RESUMEN

Whooping cough is caused by Bordetella pertussis and still constitutes one of the top five causes of death in young children, particularly in developing countries. The calmodulin-activated adenylyl cyclase (AC) toxin CyaA substantially contributes to disease development. Thus, potent and selective CyaA inhibitors would be valuable drugs for the treatment of whooping cough. However, it has been difficult to obtain potent CyaA inhibitors with selectivity relative to mammalian ACs. Selectivity is important for reducing potential toxic effects. In a previous study we serendipitously found that bis-methylanthraniloyl (bis-MANT)-IMP is a more potent CyaA inhibitor than MANT-IMP (Mol Pharmacol 72:526-535, 2007). These data prompted us to study the effects of a series of 32 bulky mono- and bis-anthraniloyl (ANT)-substituted nucleotides on CyaA and mammalian ACs. The novel nucleotides differentially inhibited CyaA and ACs 1, 2, and 5. Bis-ANT nucleotides inhibited CyaA competitively. Most strikingly, bis-Cl-ANT-ATP inhibited CyaA with a potency ≥100-fold higher than ACs 1, 2, and 5. In contrast to MANT-ATP, bis-MANT-ATP exhibited low intrinsic fluorescence, thereby substantially enhancing the signal-to noise ratio for the analysis of nucleotide binding to CyaA. The high sensitivity of the fluorescence assay revealed that bis-MANT-ATP binds to CyaA already in the absence of calmodulin. Molecular modeling showed that the catalytic site of CyaA is sufficiently spacious to accommodate both MANT substituents. Collectively, we have identified the first potent CyaA inhibitor with high selectivity relative to mammalian ACs. The fluorescence properties of bis-ANT nucleotides facilitate development of a high-throughput screening assay.


Asunto(s)
Adenosina Trifosfato/análogos & derivados , Inhibidores de Adenilato Ciclasa , Bordetella pertussis/enzimología , Toxina del Pertussis/antagonistas & inhibidores , ortoaminobenzoatos/química , ortoaminobenzoatos/farmacología , Adenosina Trifosfato/química , Adenosina Trifosfato/farmacología , Adenilil Ciclasas/metabolismo , Animales , Sitios de Unión/efectos de los fármacos , Sitios de Unión/fisiología , Línea Celular , Halógenos/química , Halógenos/farmacología , Toxina del Pertussis/metabolismo , Spodoptera , Relación Estructura-Actividad
20.
J Pharmacol Exp Ther ; 337(3): 724-33, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21389094

RESUMEN

Previous exposure to amphetamine leads to enhanced locomotor and nucleus accumbens (NAcc) dopamine (DA) responding to the drug as well as enhanced amphetamine self-administration. Here, we investigated the effects of exposure to Δ(9)-tetrahydrocannibinol (Δ(9)-THC) on behavioral and biochemical responding to amphetamine. Rats in different groups received five exposure injections of vehicle or one of five doses of Δ(9)-THC (0.4, 0.75, 1.5, 3.0, and 6.0 mg/kg i.p.) and were tested 2 days and 2 weeks later. Exposure to all but the lowest and highest doses of Δ(9)-THC enhanced the locomotor response to amphetamine (0.75 mg/kg i.p.), but all failed to enhance NAcc DA overflow in response to the drug. Moreover, exposure to 3.0 mg/kg i.p. Δ(9)-THC increased forskolin-evoked adenylyl cyclase activity in the NAcc and rats' locomotor response to the direct DA receptor agonist apomorphine (1.0 mg/kg s.c.), suggesting that Δ(9)-THC sensitized locomotor responding to amphetamine by up-regulating postsynaptic DA receptor signaling in the NAcc. Finally, amphetamine self-administration (200 µg/kg/infusion i.v.) was enhanced in amphetamine (5 × 1.5 mg/kg i.p.)-exposed rats, but not in rats exposed to Δ(9)-THC (5 × 3.0 mg/kg i.p.). Previous exposure to this dose of Δ(9)-THC modestly increased apomorphine SA (0.5 mg/kg/infusion i.v.). Thus, unlike amphetamine exposure, exposure to Δ(9)-THC does not enhance the subsequent NAcc DA response to amphetamine or promote amphetamine self-administration. Although Δ(9)-THC leads to alterations in postsynaptic DA receptor signaling in the NAcc and these can affect the generation of locomotion, these neuroadaptations do not seem to be linked to the expression of enhanced amphetamine self-administration.


Asunto(s)
Anfetamina/administración & dosificación , Estimulantes del Sistema Nervioso Central/administración & dosificación , Dronabinol/farmacología , Actividad Motora/efectos de los fármacos , Psicotrópicos/farmacología , Adenilil Ciclasas/metabolismo , Anfetamina/farmacología , Animales , Apomorfina/administración & dosificación , Apomorfina/farmacología , Estimulantes del Sistema Nervioso Central/farmacología , Agonistas de Dopamina/administración & dosificación , Agonistas de Dopamina/farmacología , Relación Dosis-Respuesta a Droga , Masculino , Núcleo Accumbens/efectos de los fármacos , Psicotrópicos/metabolismo , Ratas , Ratas Long-Evans , Ratas Sprague-Dawley , Autoadministración
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