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1.
Anal Chem ; 88(20): 10080-10087, 2016 Oct 18.
Artículo en Inglés | MEDLINE | ID: mdl-27657987

RESUMEN

A broad-spectrum noncompetitive immunoassay allowing sensitive and simple detection of a group of similar compounds would be an ideal tool for screening low-molecular weight analytes (<2000 Da) having many variants. However, the development of an essential antibody pair capable of sandwich-type recognition of the analytes' small generic core structure is a demanding task due to limited space available for simultaneous binding of two different antibodies. We report here a generic noncompetitive assay for cyanobacterial microcystins (MCs) and nodularins (Nod), a group of structurally related small cyclic peptides (∼1000 Da) with more than 100 naturally occurring analogs. The assay is based on the unique combination of a generic anti-immunocomplex (anti-IC) single-chain fragment of antibody variable domain (scFv) and a monoclonal antibody capable of binding to an Adda-group (3-amino-9-methoxy-2,6,8-trimethyl-10-phenyldeca-4(E),6(E)-dienoic acid) present in all MCs/Nod. The anti-IC scFv was isolated from a large synthetic antibody library with phage display and used to develop a single-step sandwich-type noncompetitive immunocomplex assay. The sensitive time-resolved immunofluorometry-based assay is capable of detecting all the 11 tested commonly occurring hepatotoxins (MC-LR, -dmlR, -RR, -dmRR, -LA, -LY, -LF, -LW, -YR, -WR, and Nod-R) at concentration below 0.1 µg/L in a 1 h assay. Using MC-LR, the most studied toxic and widely distributed of the toxins, the calculated detection limits (based on blank + 3SD response) are ∼0.026 µg/L in 1 h and ∼0.1 µg/L in 10 min assay time. This is by far the fastest reported immunoassay for MCs and Nod with a detection limit far below the World Health Organization's guideline limit (1 µg/L of MC-LR equivalent in drinking water). The assay was validated with spiked tap and lake water as well as with environmental surface water samples. The developed assay provides a simple, rapid, and highly sensitive tool for the quantitative detection of MCs/Nod with the additional benefit of automation and high-throughput possibilities for large scale screening of drinking and environmental surface water samples. Furthermore, the study describes the first demonstration of the assay intended for the detection of an analyte group comprising similar low-molecular weight compounds exhibiting the benefits of a reagent excess type assay.

2.
Ecotoxicol Environ Saf ; 87: 49-56, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23122919

RESUMEN

Blooms of toxic cyanobacteria, associated with illness and mortality in humans and animals, are becoming increasingly common worldwide. The safe use of surface waters for drinking water production and recreation necessitates assessment of toxigenic cyanobacteria. We have developed simple and reliable sample preparation and qPCR methods to detect microcystin-producing strains of three major bloom-forming genera, Anabaena, Microcystis and Planktothrix. The mcyB second thiolation motif, previously not recognized as a potential target for qPCR, was used as a basis for primer and genus-specific probe design. Assay specificity and sensitivity was confirmed with cultured cyanobacterial strains and the effect of different sample preparation methods on quantification was investigated. Sample filtration and cell lysis reduced assay time and resulted in more efficient amplification compared to DNA extraction. Positive correlation (p<0.005) between mcyB copy numbers and microcystin concentrations was observed in environmental samples. The results encourage the use of qPCR in water risk management.


Asunto(s)
Monitoreo del Ambiente/métodos , Reacción en Cadena en Tiempo Real de la Polimerasa , Anabaena/clasificación , Anabaena/genética , Animales , Cianobacterias/clasificación , Cianobacterias/genética , ADN Bacteriano/química , Microcistinas/metabolismo , Microcystis/genética , Gestión de Riesgos/métodos
3.
Anal Biochem ; 409(1): 14-21, 2011 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-20920457

RESUMEN

Recombinant sarafloxacin-recognizing antibody was engineered with the use of novel fluoroquinolone (FQ) derivatives. A monoclonal FQ antibody, 6H7, was targeted to random mutagenesis to broaden the specificity of the antibody in development of a generic assay for FQ antibiotics. Engineering involved the synthesis of different small-sized FQ molecules to immobilize and detect the mutant antibodies. Selections with labeled FQs resulted in several mutant antibodies with increased affinity or wider specificity toward different FQs. The best characterized mutant antibody was capable of recognizing seven of eight targeted FQs below maximum residue limits set by the European Union. The results are promising in regard to the development of a multiresidue immunoassay for FQs based on a single antibody.


Asunto(s)
Antibacterianos/análisis , Anticuerpos Monoclonales/inmunología , Fluoroquinolonas/análisis , Inmunoensayo/métodos , Ingeniería de Proteínas , Antibacterianos/síntesis química , Antibacterianos/inmunología , Anticuerpos Monoclonales/genética , Anticuerpos Monoclonales/metabolismo , Especificidad de Anticuerpos , Biotinilación , Fluoroquinolonas/síntesis química , Fluoroquinolonas/inmunología , Mutagénesis , Biblioteca de Péptidos , Proteínas Recombinantes/genética , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/metabolismo , Relación Estructura-Actividad
4.
Anal Biochem ; 396(2): 242-9, 2010 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-19818328

RESUMEN

High-capacity surfaces can enhance analyte-binding kinetics and be beneficial for rapid immunoassays. Site-specifically immobilized, oriented recombinant single-chain Fv (scFv) and Fab antibody fragments were compared with a conventional, nonoriented monoclonal antibody (Mab) to capture antigen from serum to solid surface in a one-step, two-site thyroid-stimulating hormone (TSH) immunoassay with a 5-min incubation time. The assay used a ready-to-use dry reagent-based concept and time-resolved fluorescent measurement. TSH binding capacities were 3.0-fold (Fab) and at least 4.1-fold (scFv) higher when recombinant antibodies were used instead of Mab. Recombinant antibody fragments also produced faster kinetics (5 vs. 45-min saturation level) than Mab: 21-25% (Mab) versus 72-83% (scFv and Fab). Analytical sensitivities of the 5-min assay were 0.09 mIU/L TSH (Fab), 0.16 mIU/L TSH (scFv), and 0.26 mIU/L TSH (Mab). Between-run variabilities were 4.2-7.9% (Fab), 4.6-17.7% (scFv), and 5.5-7.2% (Mab). The assays correlated well with the AutoDELFIA hTSH (human TSH) Ultra assay (r=0.99, n=109). Fab was good in all aspects of immunoassay--capacity, kinetics, sensitivity, and analytical performance. As a homogeneous, stable, and small-sized binding molecule with optimized surface-coating properties as well as reduced risk for interference by heterophilic antibodies, Fab fragment is a promising and realistic immunoreagent for the future.


Asunto(s)
Inmunoensayo/métodos , Fragmentos Fab de Inmunoglobulinas/inmunología , Tirotropina/análisis , Anticuerpos Monoclonales/inmunología , Fragmentos Fab de Inmunoglobulinas/genética , Cinética , Mediciones Luminiscentes/métodos , Proteínas Recombinantes/inmunología , Tirotropina/inmunología , Factores de Tiempo
5.
Toxins (Basel) ; 13(1)2020 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-33379255

RESUMEN

The use of synthetic antibody libraries and phage displays provides an efficient and robust method for the generation of antibodies against a wide range of targets with highly specific binding properties. As the in vitro selection conditions can be easily controlled, these methods enable the rapid generation of binders against difficult targets such as toxins and haptens. In this study, we used deoxynivalenol mycotoxin as a target to generate anti-idiotype-antibodies with unique binding properties from synthetic antibody libraries. The binding of the selected anti-idiotype antibodies can be efficiently inhibited with the addition of free isoforms of deoxynivalenol. The antibody was consecutively used to develop deoxynivalenol-specific ELISA and TRF-immunoassays, which can detect deoxynivalenol and two of the most common metabolic isoforms in the range of 78-115 ng/mL.


Asunto(s)
Anticuerpos Antiidiotipos/inmunología , Micotoxinas/inmunología , Técnicas de Visualización de Superficie Celular , Inmunoensayo , Micotoxinas/química
6.
Biosensors (Basel) ; 9(2)2019 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-31216673

RESUMEN

Cyanobacterial blooms cause local and global health issues by contaminating surface waters. Microcystins and nodularins are cyclic cyanobacterial peptide toxins comprising numerous natural variants. Most of them are potent hepatotoxins, tumor promoters, and at least microcystin-LR is possibly carcinogenic. In drinking water, the World Health Organization (WHO) recommended the provisional guideline value of 1 µg/L for microcystin-LR. For water used for recreational activity, the guidance values for microcystin concentration varies mostly between 4-25 µg/L in different countries. Current immunoassays or lateral flow strips for microcystin/nodularin are based on indirect competitive method, which are generally more prone to sample interference and sometimes hard to interpret compared to two-site immunoassays. Simple, sensitive, and easy to interpret user-friendly methods for first line screening of microcystin/nodularin near water sources are needed for assessment of water quality and safety. We describe the development of a two-site sandwich format lateral-flow assay for the rapid detection of microcystins and nodularin-R. A unique antibody fragment capable of broadly recognizing immunocomplexes consisting of a capture antibody bound to microcystins/nodularin-R was used to develop the simple lateral flow immunoassay. The assay can visually detect the major hepatotoxins (microcystin-LR, -dmLR, -RR, -dmRR, -YR, -LY, -LF -LW, and nodularin-R) at and below the concentration of 4 µg/L. The signal is directly proportional to the concentration of the respective toxin, and the use of alkaline phosphatase activity offers a cost efficient alternative by eliminating the need of toxin conjugates or other labeling system. The easy to interpret assay has the potential to serve as a microcystins/nodularin screening tool for those involved in water quality monitoring such as municipal authorities, researchers, as well as general public concerned of bathing water quality.


Asunto(s)
Toxinas Bacterianas/análisis , Cianobacterias/química , Inmunoensayo/instrumentación , Microcistinas/análisis , Péptidos Cíclicos/análisis , Carcinógenos/análisis , Diseño de Equipo , Tiras Reactivas/análisis , Agua/análisis
7.
Biochim Biophys Acta ; 1764(11): 1735-40, 2006 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17049319

RESUMEN

To enable Edman sequencing of pyroglutamylated immunoglobulins, enzymatic deblocking by pyroglutamate aminopeptidase is performed, often with variable yield and compromised solubility. Recently, enzymatic deblocking of immunoglobulins without denaturation was described. Although the conditions ensured efficient removal of pyroglutamyl residues, we conclude that deblocking is preceded by denaturation, which results in aggregation of the immunoglobulins. To study the effect of folding status on deblocking we developed a methanol based deblocking solution, which preserved the enzymatic activity of pyroglutamate aminopeptidase, provided conditions compatible with sequencing and enhanced deblocking of electroblotted samples, as well. At 50 degrees C and 35% (v/v) methanol the immunoglobulin chains were completely aggregated, but the degree of deblocking was comparable to that obtained with the previously described method. At 37 degrees C, the immunoglobulins were partly aggregated, but the deblocked chains were completely in the insoluble fractions, whereas the soluble fractions had retained pyroglutamylation in both chains, suggesting that unfolding of the immunoglobulins is required for the excision of the pyroglutamates. Inspection of the structures of pyroglutamylated immunoglobulin and pyroglutamate aminopeptidase P. furiosus indicates that the enzyme requires the substrate in an extended conformation, a criterium, which we conclude not to be fulfilled in the native form of immunoglobulins. Unfolding of the N-terminus would disrupt the immunoglobulin fold by breaking interactions between secondary structure elements and expose surfaces prone to aggregation.


Asunto(s)
Cadenas Pesadas de Inmunoglobulina/metabolismo , Cadenas Ligeras de Inmunoglobulina/metabolismo , Ácido Pirrolidona Carboxílico/metabolismo , Electroforesis en Gel de Poliacrilamida , Calor , Modelos Moleculares , Desnaturalización Proteica , Pyrococcus furiosus/enzimología , Piroglutamil-Peptidasa I/metabolismo
8.
Microorganisms ; 5(3)2017 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-28895936

RESUMEN

Nodularin (NOD) is a cyclic penta-peptide hepatotoxin mainly produced by Nodularia spumigena, reported from the brackish water bodies of various parts of the world. It can accumulate in the food chain and, for safety reasons, levels of NOD not only in water bodies but also in food matrices are of interest. Here, we report on a non-competitive immunoassay for the specific detection of NOD. A phage display technique was utilized to interrogate a synthetic antibody phage library for binders recognizing NOD bound to an anti-ADDA (3-Amino-9-methoxy-2,6,8-trimethyl-10-phenyldeca-4(E),6(E)-dienoic acid) monoclonal antibody (Mab). One of the obtained immunocomplex binders, designated SA32C11, showed very high specificity towards nodularin-R (NOD-R) over to the tested 10 different microcystins (microcystin-LR, -dmLR, -RR, -dmRR, -YR, -LY, -LF, -LW, -LA, -WR). It was expressed in Escherichia coli as a single chain antibody fragment (scFv) fusion protein and used to establish a time-resolved fluorometry-based assay in combination with the anti-ADDA Mab. The detection limit (blank + 3SD) of the immunoassay, with a total assay time of 1 h 10 min, is 0.03 µg/L of NOD-R. This represents the most sensitive immunoassay method for the specific detection of NOD reported so far. The assay was tested for its performance to detect NOD using spiked (0.1 to 3 µg/L of NOD-R) water samples including brackish sea and coastal water and the recovery ranged from 79 to 127%. Furthermore, a panel of environmental samples, including water from different sources, fish and other marine tissue specimens, were analyzed for NOD using the assay. The assay has potential as a rapid screening tool for the analysis of a large number of water samples for the presence of NOD. It can also find applications in the analysis of the bioaccumulation of NOD in marine organisms and in the food chain.

9.
Clin Biochem ; 39(8): 843-50, 2006 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16806144

RESUMEN

OBJECTIVES: To evaluate the performance of a new cTnI immunoassay utilizing site-specifically biotinylated recombinant Fab fragments on recently established spot wells. DESIGN AND METHODS: Two different cTnI-specific recombinant site-specifically biotinylated Fab fragments were produced. The performance of the new sandwich-type cTnI immunoassay in spot wells was evaluated in terms of binding capacity, assay kinetics and assay sensitivity and compared with a cTnI immunoassay carried out in conventional microtitration wells. Furthermore, the functionality of the recombinant Fab fragments was compared to the corresponding monoclonal antibodies in assay with one, two or three capture antibodies. RESULTS: The signal-to-background level was improved, providing an analytical detection limit of 0.002 microg/l with a surface of two capture Fab fragments. The spot wells increased the signal levels 2-fold and a further 4-fold improvement was detected with the Fab fragments already after 5 min assay time. CONCLUSIONS: The spot-concept in combination with site-oriented capture Fab fragments carries great promise as a very useful approach to improve the immunoassay performance of future point-of-care cTnI assays.


Asunto(s)
Inmunoensayo/métodos , Fragmentos Fab de Inmunoglobulinas/inmunología , Troponina I/análisis , Humanos , Cinética , Proteínas Recombinantes/inmunología , Sensibilidad y Especificidad
10.
Harmful Algae ; 52: 1-10, 2016 02.
Artículo en Inglés | MEDLINE | ID: mdl-28073466

RESUMEN

Many marine dinoflagellates, including several species of the genus Alexandrium, Gymnodinium catenatum, and Pyrodinium bahamense are known for their capability to produce paralytic shellfish toxins (PST), which can cause severe, most often food-related poisoning. The recent discovery of the first PST biosynthesis genes has laid the foundation for the development of molecular detection methods for monitoring and study of PST-producing dinoflagellates. In this study, a probe-based qPCR method for the detection and quantification of the sxtA4 gene present in Alexandrium spp. and Gymnodinium catenatum was designed. The focus was on Alexandrium ostenfeldii, a species which recurrently forms dense toxic blooms in areas within the Baltic Sea. A consistent, positive correlation between the presence of sxtA4 and PST biosynthesis was observed, and the species was found to maintain PST production with an average of 6 genomic copies of sxtA4. In August 2014, A. ostenfeldii populations were studied for cell densities, PST production, as well as sxtA4 and species-specific LSU copy numbers in Föglö, Åland, Finland, where an exceptionally dense bloom, consisting of 6.3×106cellsL-1, was observed. Cell concentrations, and copy numbers of both of the target genes were positively correlated with total STX, GTX2, and GTX3 concentrations in the environment, the cell density predicting toxin concentrations with the best accuracy (Spearman's ρ=0.93, p<0.01). The results indicated that all A. ostenfeldii cells in the blooms harbored the genetic capability of PST production, making the detection of sxtA4 a good indicator of toxicity.


Asunto(s)
Dinoflagelados/genética , Dinoflagelados/metabolismo , Saxitoxina/genética , Saxitoxina/metabolismo , Dinoflagelados/química , Finlandia , Densidad de Población , Reacción en Cadena en Tiempo Real de la Polimerasa
11.
J Immunol Methods ; 296(1-2): 159-70, 2005 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-15680160

RESUMEN

Stability of single-chain Fvs (scFvs) can be improved by mutagenesis followed by phage display selection where the unstable variants are first inactivated by, for example, denaturing treatment. Here we describe a modified strategy for the selection of stabilized antibody fragments by phage display, based on denaturation under reducing conditions. This strategy was applied to an anti-thyroid-stimulating hormone (TSH) scFv fragment which refolded remarkably during the selection if denaturation was carried out in conventionally used non-reducing conditions. Refolding was, however, efficiently prevented by combining denaturation with reduction of the intra-domain disulfide bridges, which created favourable conditions for selection of clones with improved stability. Using this strategy, scFv mutants with 8-9 degrees C improved thermal stability and 0.8-0.9 M improved stability for guanidinium chloride were found after 4-5 enrichment cycles. The most stable mutants selected contained either Lys(H)66Arg or Asn(H)52aSer mutations, which are known to stabilize other scFvs. Periplasmic expression level of the mutants was also improved.


Asunto(s)
Región Variable de Inmunoglobulina/genética , Inmunoglobulinas Estimulantes de la Tiroides/genética , Biblioteca de Péptidos , Animales , Disulfuros/química , Guanidina/química , Calor , Región Variable de Inmunoglobulina/química , Región Variable de Inmunoglobulina/inmunología , Inmunoglobulinas Estimulantes de la Tiroides/química , Inmunoglobulinas Estimulantes de la Tiroides/inmunología , Ratones , Mutagénesis/genética , Oxidación-Reducción , Mutación Puntual/genética , Desnaturalización Proteica/genética , Pliegue de Proteína , Termodinámica
12.
J Immunol Methods ; 422: 72-9, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25889751

RESUMEN

Prostate specific antigen (PSA) is a commonly used marker of prostate cancer. A panel of four kallikrein immunoassays has been reported to improve the prediction of prostate biopsy outcome (cancer vs benign) in men with elevated PSA in the circulation. Assay of one of the kallikrein forms, intact free PSA (fPSA-I), is based on a unique monoclonal antibody (4D4), which is specific for PSA without the internal cleavage at Lys(145)-Lys(146). Due to high dissociation rate the 4D4 antibody is less than optimal for achieving a highly sensitive robust assay. In this study, we cloned the 4D4 Mab into a recombinant fragment (Fab) format and constructed three mutant libraries with the aim to increase its binding affinity. The libraries contained targeted mutations either in the CDR-H1, CDR-H2 or CDR-L3 region. PSA-I specific antibodies were enriched from the libraries by phage display technology. We identified fourteen unique clones with 1-5 mutated amino acids showing reduced dissociation of the PSA conjugate compared to the wt-4D4 Fab. Five of these mutant antibodies had 2-6 times higher binding affinity compared to the wt-4D4 Fab yet retaining the original specificity for PSA-I. The analytical sensitivity of fPSA-I assay with mutant L3-2 Fab was 0.12 µg/L compared to 4.46 µg/L with the original wt-4D4 Fab. In the method comparison study, the developed assay showed an excellent correlation to the existing fPSA-I assay. The high affinity and specificity of these mutant antibodies have potential to provide sensitive and robust detection of intact and nicked PSA from patient samples in different test formats.


Asunto(s)
Afinidad de Anticuerpos/inmunología , Técnicas de Visualización de Superficie Celular/métodos , Fragmentos Fab de Inmunoglobulinas/inmunología , Antígeno Prostático Específico/sangre , Neoplasias de la Próstata/diagnóstico , Anticuerpos Monoclonales/inmunología , Humanos , Inmunoensayo , Fragmentos Fab de Inmunoglobulinas/genética , Masculino , Antígeno Prostático Específico/análisis , Antígeno Prostático Específico/inmunología
13.
J Agric Food Chem ; 50(15): 4194-201, 2002 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-12105945

RESUMEN

Sulfa antibiotics (sulfonamides) are derivatives of p-aminobenzenesulfonamide that are widely used in veterinary medicine. Foods derived from treated animals may be contaminated with these drugs. However, current immunobased sulfonamide detection methods are unfit for screening of products because they are either too insensitive or specific for a few compounds only. An immunoassay capable of detecting all sulfas in a single reaction would be ideal for screening. For development of a binder capable of binding all sulfas, a protein engineering approach was chosen and the properties of monoclonal antibody 27G3 were improved with mutagenesis followed by selection with phage display. Several different mutant antibodies were isolated. The cross-reaction profile of the best mutant antibody was significantly improved over that of the wild-type antibody: it was capable of binding 9 of the tested 13 sulfonamides within a narrow concentration range and also bound the rest of the sulfas, albeit within a wider concentration range.


Asunto(s)
Anticuerpos Monoclonales/genética , Haptenos , Inmunoensayo , Ingeniería de Proteínas , Sulfonamidas/análisis , Anticuerpos Monoclonales/química , Anticuerpos Monoclonales/inmunología , Especificidad de Anticuerpos , Clonación Molecular , Contaminación de Alimentos , Vectores Genéticos , Carne/análisis , Mutagénesis , Biblioteca de Péptidos , Plásmidos , Reacción en Cadena de la Polimerasa , Sensibilidad y Especificidad , Medicina Veterinaria
14.
J Agric Food Chem ; 61(49): 11981-5, 2013 Dec 11.
Artículo en Inglés | MEDLINE | ID: mdl-24218986

RESUMEN

Screening of a group of antibiotics from foodstuffs has traditionally relied on sophisticated chemical or physical analysis methods, such as liquid chromatography and mass spectrometric applications. The equipment for these techniques is expensive and not always applicable for high throughput screening. There is a need for an easy and cost efficient detection method for simultaneous screening of structurally similar compounds. Here we describe the engineering of a recombinant antibody which was subjected to oligonucleotide targeted random mutagenesis to emphasize the generic specificity of fluoroquinolone binding. Phage display together with small sized fluoroquinolone derivatives was used to find antibodies of high affinity and generic specificity. The most improved antibody was used to develop a time-resolved fluorescence immunoassay which was further optimized and applied for the detection of fluoroquinolone residues from spiked whole milk samples. The assay can be used to efficiently screen all European Agency for the Evaluation of Medicinal Products (EMEA) controlled fluoroquinolones from whole milk samples with detection levels ranging from 0.2 to 68 µg L(-1).


Asunto(s)
Antibacterianos/análisis , Anticuerpos/análisis , Residuos de Medicamentos/análisis , Fluoroquinolonas/análisis , Inmunoensayo/métodos , Leche/química , Oligonucleótidos/genética , Animales , Anticuerpos/genética , Anticuerpos/metabolismo , Contaminación de Alimentos/análisis , Inmunoensayo/instrumentación , Mutagénesis Sitio-Dirigida , Ingeniería de Proteínas , Proteínas Recombinantes/análisis , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidad de la Especie
15.
Protein Eng Des Sel ; 26(10): 683-93, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23966567

RESUMEN

In directed evolution experiments, a single randomization scheme of an antibody gene does not provide optimal diversity for recognition of all sizes of antigens. In this study, we have expanded the recognition potential of our universal library, termed ScFvP, with a second distinct diversification scheme. In the second library, termed ScFvM, diversity was designed closer to the center of the antigen binding site in the same antibody framework as earlier. Also, the CDR-H3 loop structures were redesigned to be shorter, 5-12 aa and mostly without the canonical salt bridge between Arg106H and Asp116H to increase the flexibility of the loop and to allow more space in the center of the paratope for binding smaller targets. Antibodies were selected from the two libraries against various antigens separately and as a mixture. The origin and characteristics of the retrieved antibodies indicate that complementary diversity results in complementary functionality widening the spectrum of targets amenable for selection.


Asunto(s)
Evolución Molecular Dirigida/métodos , Cadenas Ligeras de Inmunoglobulina/química , Cadenas Ligeras de Inmunoglobulina/genética , Anticuerpos de Cadena Única/química , Anticuerpos de Cadena Única/genética , Secuencia de Aminoácidos , Sitios de Unión , Digoxigenina/inmunología , Humanos , Cadenas Ligeras de Inmunoglobulina/inmunología , Toxinas Marinas , Microcistinas/inmunología , Modelos Moleculares , Datos de Secuencia Molecular , Antígeno Prostático Específico/inmunología , Conformación Proteica , Anticuerpos de Cadena Única/inmunología
16.
Environ Sci Pollut Res Int ; 20(8): 5243-64, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23378259

RESUMEN

The cyanobacterial cytotoxin cylindrospermopsin (CYN) has become increasingly common in fresh waters worldwide. It was originally isolated from Cylindrospermopsis raciborskii in Australia; however, in European waters, its occurrence is associated with other cyanobacterial species belonging to the genera Aphanizomenon and Anabaena. Moreover, cylindrospermopsin-producing strains of widely distributed C. raciborskii have not yet been observed in European waters. The aims of this work were to assess the occurrence of CYN in lakes of western Poland and to identify the CYN producers. The ELISA tests, high-performance liquid chromatography (HPLC)-DAD, and HPLC-mass spectrometry (MS)/MS were conducted to assess the occurrence of CYN in 36 lakes. The cyrJ, cyrA, and pks genes were amplified to identify toxigenic genotypes of cyanobacteria that are capable of producing CYN. The toxicity and toxigenicity of the C. raciborskii and Aphanizomenon gracile strains isolated from the studied lakes were examined. Overall, CYN was detected in 13 lakes using HPLC-MS/MS, and its concentrations varied from trace levels to 3.0 µg L(-1). CYN was widely observed in lakes of western Poland during the whole summer under different environmental conditions. Mineral forms of nutrients and temperature were related to CYN production. The molecular studies confirmed the presence of toxigenic cyanobacterial populations in all of the samples where CYN was detected. The toxicity and toxigenicity analyses of isolated cyanobacteria strains revealed that A. gracile was the major producer of CYN.


Asunto(s)
Aphanizomenon/aislamiento & purificación , Lagos/microbiología , Uracilo/análogos & derivados , Contaminantes del Agua/análisis , Alcaloides , Anabaena/genética , Anabaena/aislamiento & purificación , Aphanizomenon/genética , Aphanizomenon/metabolismo , Toxinas Bacterianas , Toxinas de Cianobacterias , Cylindrospermopsis/genética , Cylindrospermopsis/aislamiento & purificación , Monitoreo del Ambiente , Genes Bacterianos/genética , Fitoplancton/genética , Fitoplancton/aislamiento & purificación , Fitoplancton/metabolismo , Polonia , Análisis de Secuencia de ADN , Temperatura , Uracilo/análisis , Uracilo/biosíntesis , Microbiología del Agua , Contaminantes del Agua/metabolismo
17.
Mol Biotechnol ; 44(3): 221-31, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-20012710

RESUMEN

Efficient display of antibody on filamentous phage M13 coat is crucial for successful biopanning selections. We applied a directed evolution strategy to improve the oligovalent display of a poorly behaving Fab fragment fused to phage gene-3 for minor coat protein (g3p). The Fab displaying clones were enriched from a randomly mutated Fab gene library with polyclonal anti-mouse IgG antibodies. Contribution of each mutation to the improved phenotype of one selected mutant was studied. It was found out that two point mutations had significant contribution to the display efficiency of Fab clones superinfected with hyperphage. The most dramatic effect was connected to a start codon mutation, from AUG to GUG, of the PelB signal sequence preceding the heavy chain. The clone carrying this mutation, FabM(GUG), displayed Fab 19-fold better and yielded twofold higher phage titers than the original Fab.


Asunto(s)
Bacteriófago M13/genética , Evolución Molecular Dirigida , Fragmentos Fab de Inmunoglobulinas/metabolismo , Biblioteca de Péptidos , Animales , Secuencia de Bases , Clonación Molecular , Codón Iniciador , Fragmentos Fab de Inmunoglobulinas/genética , Ratones , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Mutación Puntual , Señales de Clasificación de Proteína/genética
18.
Biosens Bioelectron ; 25(12): 2615-21, 2010 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-20466534

RESUMEN

A reliable and cost-effective electrochemical method for the detection of deoxynivalenol (DON) in cereals and cereal-based food samples based on the use of a novel anti-DON Fab fragment is presented. The analytical system employed, Enzyme-Linked-Immunomagnetic-Electrochemical (ELIME) assay, is based on the use of immunomagnetic beads (IMBs) coupled with eight magnetized screen-printed electrodes (8-mScPEs) as electrochemical transducers. Using standard solutions of DON, a working range between 100 and 4500 ng/ml was obtained with an EC(50) of 380 ng/ml. The ELIME assay was employed to evaluate the cross-reactivity of the Fab fragment towards different trichothecenes revealing a good selectivity towards DON over other trichothecenes with the exception of 3-Ac-DON. The sensor was then applied to cereals and cereal-based food samples (wheat, breakfast cereal and baby-food) and a wide range of sample treatment procedures was tested. Within-laboratory precision (9-24% repeatability for breakfast cereals and 10-33% for baby-food) and recovery data (82-110% for breakfast cereals and 97-108% for baby-food) were calculated by analyzing blank breakfast cereals and baby-foods fortified with DON, demonstrating that the proposed method has the capability for use as a screening assay for DON in such products.


Asunto(s)
Técnicas Biosensibles/métodos , Contaminación de Alimentos/análisis , Tricotecenos/análisis , Animales , Anticuerpos Inmovilizados , Técnicas Biosensibles/instrumentación , Grano Comestible/química , Técnicas Electroquímicas , Humanos , Inmunoensayo/métodos , Fragmentos Fab de Inmunoglobulinas , Lactante , Alimentos Infantiles/análisis , Proteínas Recombinantes , Tricotecenos/inmunología , Triticum/química
19.
J Immunol Methods ; 345(1-2): 80-9, 2009 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-19379754

RESUMEN

Nanoparticle labels have been shown to improve the sensitivity of a sandwich immunoassay significantly. Further improvement in sensitivity is limited by nonspecific binding of the nanoparticle labels. Here, an experimental characterization of assay performance was carried out using clinically important analytes thyroid stimulating hormone and prostate-specific antigen. Particular attention was paid to characterization of nonspecific binding properties of nanoparticle labels. Therefore, different particle sizes and high affinity monoclonal antibodies (Mab) and their Fab and scFv recombinant antibody fragments were investigated. Combination of Fab fragment as a capture antibody and Mab as a detector antibody on a nanoparticle label resulted in high signal-to-background ratio consistently. Against the expectations no significant difference in nonspecific binding was found using fragmented antibodies compared to Mabs. The results also suggested that nonspecific binding was independent of the particle size. The particle size had a significant effect on the specific signal favouring the use of small particles giving a high specific signal. This study indicated that nonspecific binding is not readily affected by the physical size of the nanoparticle label or antibodies used in the assay.


Asunto(s)
Anticuerpos Monoclonales/química , Inmunoensayo/métodos , Fragmentos Fab de Inmunoglobulinas/química , Nanopartículas/química , Poliestirenos/química , Especificidad de Anticuerpos , Europio/química , Humanos , Tamaño de la Partícula , Antígeno Prostático Específico/análisis , Sensibilidad y Especificidad , Tirotropina/análisis
20.
Bioconjug Chem ; 14(1): 103-11, 2003.
Artículo en Inglés | MEDLINE | ID: mdl-12526699

RESUMEN

A majority of current immunoassays rely on capturing a specific analyte on a solid phase to allow the separation of the bound analyte from nonbound components. Streptavidin-coated microtitration plates are widely used for immobilization of capturing antibodies, since they provide a generic surface for immobilization of any biotinylated molecule and preserve biomolecule activity much better than direct passive adsorption. Our trials to further improve the properties of the plates resulted in a development of a modified plate, which has higher binding capacity than currently used control plate. The modified coat was prepared by cross-linking streptavidin chemically prior to adsorption onto the microtitration well surfaces. The binding capacities of the plates were measured with biotinylated, europium-labeled molecules and labeled antigen. The immunoassay performance of the plates was studied with noncompetitive, sandwich-type assays of prostate specific antigen (PSA) and human chorionic gonadotropin (hCG). The maximum immobilization capacity of the modified plate was up to 2.5 times higher than that of the control plate. The higher binding capacity was especially emphasized with small-size molecules. The modified high capacity plate increased the linear ranges of the immunoassays and thus delayed the high-dose hook effect. At high antigen concentrations the signal increased up to 59%, and at the conventional linear ranges of the assays, the increase was up to 29%. We conclude that the modified coating method will be valuable for the future miniaturized systems, where high immobilization capacity is needed at limited areas.


Asunto(s)
Inmunoensayo/instrumentación , Estreptavidina , Adsorción , Gonadotropina Coriónica/análisis , Reactivos de Enlaces Cruzados , Diseño de Equipo , Humanos , Inmunoensayo/normas , Microquímica/instrumentación , Antígeno Prostático Específico/análisis , Estándares de Referencia , Propiedades de Superficie
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