Unsupervised estimation of the age at sea departure of Atlantic salmon using magnesium, manganese, and zinc otolith chemistry.

Investigating the age at sea departure of returning Atlantic salmon is critical to better understand the role of emigration timing in survival. Among the methods available, the use of otolith chemistry can be challenging in anadromous fish, as the elements frequently used (i.e., magnesium, manganese, and zinc) can jointly reflect individual metabolism and environmental conditions. Here, we present a new unsupervised and robust method for successfully estimating the outmigration age of Atlantic salmon in the Bay of Biscay, based on otolith zinc concentrations.

Effect of metabolic rate on time-lag changes in otolith microchemistry: an experimental approach using Salmo trutta.

Ecologists have long been interested in relevant techniques to track the field movement patterns of fish. The elemental composition of otoliths represents a permanent record of the growing habitats experienced by a fish throughout its lifetime and is increasingly used in the literature. The lack of a predictive and mechanistic understanding of the individual kinematics underlying ion incorporation/depletion limits our fine-scale temporal interpretation of the chemical signal recorded in the otolith. In particular, the rate at which elements are incorporated into otoliths is hypothesized to depend on fish physiology. However, to date, time lags have mostly been quantified on a population scale. Here, we report results from controlled experiments (translocation and artificially enriched environment) on individual trace element incorporation/depletion rates in Salmo trutta (Salmonidae). We reported significant lags (i.e. weeks to months) between changes in water chemistry and the subsequent change in otolith composition and highlighted substantial inter-individual variations in the timing and magnitude of Sr/Ca and Ba/Ca responses. These differences are partially linked to the energetic status (i.e. metabolic rate) of the individuals. It therefore appears that individuals with the highest metabolic rate are more likely to record detailed (i.e. brief) temporal changes than individuals having lower metabolic values. The time taken for environmental changes to be reflected in the growing otolith thus can no longer be assumed to remain a constant within populations. Results from the current study are a step towards the fine reconstruction of environmental histories in dynamic environments.

The biology and feeding ecology of Arctic charr in the Kerguelen Islands.

Subsequent to their introduction in the 1950s, Arctic charr Salvelinus alpinus have been able to establish a self-sustaining population that has adapted to the unique conditions of the sub-Antarctic Kerguelen Islands. Here, 48 individuals (198-415 mm) were caught with gillnets and their basic biology and feeding ecology were examined using stable isotope analysis. The Lac des Fougères population split use of littoral and pelagic resources evenly, although larger fish relied more heavily on littoral production and appear to follow the size-dependent life history habitat template seen in many Scandinavian lakes where smaller sized individuals occupy the pelagic zone and larger individuals dominate the littoral habitat. In Kerguelen, Arctic charr mature at the same ages (5.6 years) as Arctic charr in both sub-Arctic and Arctic lakes. Although mortality was average in comparison to comparator sub-Arctic lakes, it was high in comparison to Arctic lakes. Maximal age (>7+) was at the lower end of the range typically seen in sub-Arctic lakes. Although they inhabit a resource-poor environment, Kerguelen Arctic charr showed no evidence of cannibalism. Thus, while Arctic charr can survive and reproduce in the relatively unproductive Kerguelen lake environments, survival and growth nevertheless appear to be traded off against survival and longevity. The uniqueness of the population location and the recency of its introduction suggest that further monitoring of the population has the potential to yield valuable insights into both the adaptability of the species and its likely responses to ongoing large-scale environmental change as represented by climate change.

Functional effect of vaterite - the presence of an alternative crystalline structure in otoliths alters escape kinematics of the brown trout.

The fast-start escape response is the main locomotor behaviour observed in fish to evade predatory attacks and thereby increase their probability of survival. Thus far, this high-speed sensory motor control has been extensively studied in relation to extrinsic factors. In contrast, there has been surprisingly little consideration of intrinsic individual factors that can mediate sensorial perception, such as inter-individual variability in mechanosensory systems. The inner ear of teleost fishes is composed of otoliths that play an important role in hearing and balance functions. While sagittal otoliths are normally composed of aragonite in many fish species, the inclusion of vaterite (an abnormal crystalline structure) has been reported in a number of individuals from different environments. There is currently strong theoretical and empirical evidence that vaterite deposition has a negative impact on auditory sensitivity in fishes. While the functional/behavioural implications of this defect on otolith-related hearing function has been hypothesised, it has remained largely untested experimentally. Here, using juvenile (0+ years) Salmo trutta originating from the wild in experimental conditions, we report for the first time that the deposition of calcium carbonate in its crystalline vateritic polymorph has significant pervasive effects on the escape kinematics of fish. The presence of an alternative crystalline structure in otoliths is likely to alter fish behaviour in ways that decrease survival. We also report that altered behaviour in individuals with vateritic otoliths is partially compensated for by the presence of a functional lateral line. Such functional compensation suggests more slight consequences, if any, in the wild.

Multiple parasite introduction and host management plan: case study of lutjanid fish in the Hawaiian Archipelago.

The bluestriped snapper Lutjanus kasmira and the blacktail snapper L. fulvus were deliberately introduced in the Hawaiian Archipelago from French Polynesia in the late 1950s to enhance local fisheries. These species rapidly spread all over the Windward Islands, became extremely abundant and, therefore, caused controversial environmental concerns. A comparison of the whole metazoan parasite community of L. kasmira and L. fulvus was performed between their native ranges in French Polynesia (Moorea Island in the Society Archipelago and Ua Huka in the Marquesas Islands) and their introduced range in O'ahu, Hawaii, USA. We suggest that 8 monogenean species have been introduced with L. kasmira and L. fulvus into the Hawaiian Archipelago from French Polynesia; 2 other species as well as one nematode should be referred to as cryptogenic. Moreover, experimental mortality conducted on monogeneans found in Polynesia emphasizes the inefficiency of anti-parasite treatment which was performed 50 yr ago, explaining possible parasite introduction. Finally, we discuss the potential threat of exotic parasites to the native fish community in the Hawaiian Archipelago and conclude that the absence of co-evolved hosts prevents parasite transfer from non-indigenous to native fishes as monogeneans are highly specific.

Monogeneans of the grouper Epinephelus tauvina (Perciformes, Serranidae) off Moorea, French Polynesia, with a description of Pseudorhabdosynochus pai n. sp. (Monogenea: Diplectanidae).

Specimens of the greasy grouper Epinephelus tauvina (Forsskål), caught off Moorea, French Polynesia, harboured four species of gill monogeneans. The diplectanid Pseudorhabdosynochus pai n. sp. is characterised by an extremely big male quadriloculate organ (inner length 77 mum, cone length 15, tube length 47), the largest of all members of the genus, and a sclerotised vagina with a very complex structure, including three secondary chambers instead of one as in most species. Pseudorhabdosynochus sp. is a species of the 'cupatus group'; this species is not formally described but various measurements are provided. The ancyrocephalid Haliotrema sp. and the capsalid Benedenia sp. were rare; they are both mentioned but not described. The diplectanid fauna of E. tauvina corresponds to the pattern already found in a clade of grouper species, the members of which often harbour both a species of the 'cupatus group' and another species of Pseudorhabdosynochus Yamaguti, 1958.

Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context.

Environmental sex determination (ESD) has been detected in a range of vertebrate reptile and fish species. Eels are characterized by an ESD that occurs relatively late, since sex cannot be histologically determined before individuals reach 28 cm. Because several eel species are at risk of extinction, assessing sex at the earliest stage is a crucial management issue. Based on preliminary results of RNA sequencing, we targeted genes susceptible to be differentially expressed between ovaries and testis at different stages of development. Using qPCR, we detected testis-specific expressions of dmrt1, amh, gsdf and pre-miR202 and ovary-specific expressions were obtained for zar1, zp3 and foxn5. We showed that gene expressions in the gonad of intersexual eels were quite similar to those of males, supporting the idea that intersexual eels represent a transitional stage towards testicular differentiation. To assess whether these genes would be effective early molecular markers, we sampled juvenile eels in two locations with highly skewed sex ratios. The combined expression of six of these genes allowed the discrimination of groups according to their potential future sex and thus this appears to be a useful tool to estimate sex ratios of undifferentiated juvenile eels.

An invasive fish and the time-lagged spread of its parasite across the Hawaiian archipelago.

Efforts to limit the impact of invasive species are frustrated by the cryptogenic status of a large proportion of those species. Half a century ago, the state of Hawai'i introduced the Bluestripe Snapper, Lutjanus kasmira, to O'ahu for fisheries enhancement. Today, this species shares an intestinal nematode parasite, Spirocamallanus istiblenni, with native Hawaiian fishes, raising the possibility that the introduced fish carried a parasite that has since spread to naïve local hosts. Here, we employ a multidisciplinary approach, combining molecular, historical, and ecological data to confirm the alien status of S. istiblenni in Hawai'i. Using molecular sequence data we show that S. istiblenni from Hawai'i are genetically affiliated with source populations in French Polynesia, and not parasites at a geographically intermediate location in the Line Islands. S. istiblenni from Hawai'i are a genetic subset of the more diverse source populations, indicating a bottleneck at introduction. Ecological surveys indicate that the parasite has found suitable intermediate hosts in Hawai'i, which are required for the completion of its life cycle, and that the parasite is twice as prevalent in Hawaiian Bluestripe Snappers as in source populations. While the introduced snapper has spread across the entire 2600 km archipelago to Kure Atoll, the introduced parasite has spread only half that distance. However, the parasite faces no apparent impediments to invading the entire archipelago, with unknown implications for naïve indigenous Hawaiian fishes and the protected Papahanaumokuakea Marine National Monument.

Invasion dynamics of a fish-free landscape by brown trout (Salmo trutta).

Metapopulation dynamics over the course of an invasion are usually difficult to grasp because they require large and reliable data collection, often unavailable. The invasion of the fish-free freshwater ecosystems of the remote sub-Antarctic Kerguelen Islands following man-made introductions of brown trout (Salmo trutta) in the 1950's is an exception to this rule. Benefiting from a full long term environmental research monitoring of the invasion, we built a Bayesian dynamic metapopulation model to analyze the invasion dynamics of 85 river systems over 51 years. The model accounted for patch size (river length and connections to lakes), alternative dispersal pathways between rivers, temporal trends in dynamics, and uncertainty in colonization date. The results show that the model correctly represents the observed pattern of invasion, especially if we assume a coastal dispersal pathway between patches. Landscape attributes such as patch size influenced the colonization function, but had no effect on propagule pressure. Independently from patch size and distance between patches, propagule pressure and colonization function were not constant through time. Propagule pressure increased over the course of colonization, whereas the colonization function decreased, conditional on propagule pressure. The resulting pattern of this antagonistic interplay is an initial rapid invasion phase followed by a strong decrease in the invasion rate. These temporal trends may be due to either adaptive processes or environmental gradients encountered along the colonization front. It was not possible to distinguish these two hypotheses. Because invasibility of Kerguelen Is. freshwater ecosystems is very high due to the lack of a pre-existing fish fauna and minimal human interference, our estimates of invasion dynamics represent a blueprint for the potential of brown trout invasiveness in pristine environments. Our conclusions shed light on the future of polar regions where, because of climate change, fish-free ecosystems become increasingly accessible to invasion by fish species.

The use of geometric morphometrics in understanding shape variability of sclerotized haptoral structures of monogeneans (Platyhelminthes) with insights into biogeographic variability.

The sclerotized attachment organ of monogeneans has been widely used to address fundamental questions in ecology and evolution. However, traditional morphometric techniques appear to be partially inadequate and non-optimal. Traditional linear measurements mainly provide information on the size of sclerites but provide very little information, if any, on their shape. The shape of sclerites is indeed virtually unexplored and its implication for ecological and evolutionary processes remains to be analyzed. This study aims to both introduce and illustrate the use of geometric morphometrics in order to study sclerites of monogeneans in a biogeographic context. To do this, we investigated morphological variation patterns among four populations from the Pacific Ocean and six monogenean species through traditional and geometric morphometric techniques. Unlike the traditional method, the geometric morphometric method yielded a high percentage of individuals correctly classified to the four populations, providing strong evidence for phenotypic variability, divergence and local adaptation among islands without evolutionary constraint. Moreover, the traditional method also resulted in inconsistent interpretations of shape variations. This study highlighted the limitations that may arise when using traditional morphometric techniques and emphasizes that considerable information about the shape of sclerotized haptoral parts is added by using geometric morphometrics. Given the prominent taxonomic, ecological and evolutionary role of the haptor for characterizing monogeneans, we ultimately discuss the potential broad use of geometric morphometrics in a wide variety of ecological and evolutionary contexts. This powerful approach might allow a more robust estimation of the extent to which traditional evolutionary theories based on size of sclerites are congruent with their shape.

Multiscale determinants of parasite abundance: a quantitative hierarchical approach for coral reef fishes.

During recent decades, there have been numerous attempts to identify the key determinants of parasite communities and several influential variables have been clarified at either infra-, component or compound community scales. However, in view of the possible complexity of interactions among determinants, the commonly-used exploratory and statistical modelling techniques have often failed to find meaningful ecological patterns from such data. Moreover, quantitative assessments of factors structuring species richness, abundance, community structure and species associations in parasite communities remain elusive. Recently, because they are ideally suited for the analysis of complex and highly interactive data, there has been increasing interest in the use of classification and regression tree analyses in several ecological fields. To date, such approaches have never been used by parasitologists for field data. This study aims to both introduce and illustrate the use of multivariate regression trees in order to investigate the determinants of parasite abundance in a multi-scale quantitative context. To do this, we used new field epidemiological data from 1489 coral reef fishes collected around two islands in French Polynesia. We evaluated the relative effect and interactions of several host traits and environmental factors on the abundance of metazoan parasite assemblage at several scales and assessed the impact of major factors on each parasite taxon. Our results suggest that the islands sampled, the host species and host size are equal predictors of parasite abundance at a global scale, whereas other factors proved to be significant predictors of a local pattern, depending on host family. We also discuss the potential use of regression trees for parasitologists as both an explorative and a promising predictive tool.

Host introduction and parasites: a case study on the parasite community of the peacock grouper Cephalopholis argus (Serranidae) in the Hawaiian Islands.

The peacock grouper (Cephalopholis argus) was intentionally introduced to the Hawaiian coastal waters 50 years ago to enhance the local fisheries. Following introduction, this species spread rapidly and became extremely abundant. A comparison of the metazoan parasite community of C. argus was performed between its native range (Moorea Island, French Polynesia) and its introduced range (Oahu and Big Island, Hawaii). Polynesian groupers were infected with a highly diversified parasite community whereas Hawaiian groupers exhibited a depauperate ensemble of parasite species, C. argus having lost most of the parasites common in their native range. Interestingly, the grouper has not acquired new parasites present in Hawaiian waters. This study provides the first field evidence of significant parasite release in a wild but previously introduced fish in coral reefs and is discussed in relation to the Enemy-Release Hypothesis which has never been assessed in those ecosystems.