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1.

Out with the old, in with the new: Pioneer transcription factors as activators and repressors of lineage specification genes.

Liu, Yang; Wade, Paul A.

Mol Cell ; 84(3): 411-412, 2024 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-38307001

2.

Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4.

Saotome, Mika; Poduval, Deepak B; Grimm, Sara A; Nagornyuk, Aerica; Gunarathna, Sakuntha; Shimbo, Takashi; Wade, Paul A; Takaku, Motoki.

Nucleic Acids Res ; 52(7): 3607-3622, 2024 Apr 24.

Artículo en Inglés | MEDLINE | ID: mdl-38281186

3.

Reversing SKI-SMAD4-mediated suppression is essential for T_H17 cell differentiation.

Zhang, Song; Takaku, Motoki; Zou, Liyun; Gu, Ai-di; Chou, Wei-Chun; Zhang, Ge; Wu, Bing; Kong, Qing; Thomas, Seddon Y; Serody, Jonathan S; Chen, Xian; Xu, Xiaojiang; Wade, Paul A; Cook, Donald N; Ting, Jenny P Y; Wan, Yisong Y.

Nature ; 551(7678): 105-109, 2017 11 02.

Artículo en Inglés | MEDLINE | ID: mdl-29072299

4.

Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.

Ren, Wendan; Fan, Huitao; Grimm, Sara A; Guo, Yiran; Kim, Jae Jin; Yin, Jiekai; Li, Linhui; Petell, Christopher J; Tan, Xiao-Feng; Zhang, Zhi-Min; Coan, John P; Gao, Linfeng; Cai, Ling; Detrick, Brittany; Çetin, Burak; Cui, Qiang; Strahl, Brian D; Gozani, Or; Wang, Yinsheng; Miller, Kyle M; O'Leary, Seán E; Wade, Paul A; Patel, Dinshaw J; Wang, Gang Greg; Song, Jikui.

Proc Natl Acad Sci U S A ; 117(31): 18439-18447, 2020 08 04.

Artículo en Inglés | MEDLINE | ID: mdl-32675241

5.

Cancer-specific mutation of GATA3 disrupts the transcriptional regulatory network governed by Estrogen Receptor alpha, FOXA1 and GATA3.

Takaku, Motoki; Grimm, Sara A; De Kumar, Bony; Bennett, Brian D; Wade, Paul A.

Nucleic Acids Res ; 48(9): 4756-4768, 2020 05 21.

Artículo en Inglés | MEDLINE | ID: mdl-32232341

6.

Proteins That Read DNA Methylation.

Liu, Ke; Shimbo, Takashi; Song, Xiaosheng; Wade, Paul A; Min, Jinrong.

Adv Exp Med Biol ; 1389: 269-293, 2022.

Artículo en Inglés | MEDLINE | ID: mdl-36350514

7.

A deepening understanding of animal culture suggests lessons for conservation.

Brakes, Philippa; Carroll, Emma L; Dall, Sasha R X; Keith, Sally A; McGregor, Peter K; Mesnick, Sarah L; Noad, Michael J; Rendell, Luke; Robbins, Martha M; Rutz, Christian; Thornton, Alex; Whiten, Andrew; Whiting, Martin J; Aplin, Lucy M; Bearhop, Stuart; Ciucci, Paolo; Fishlock, Vicki; Ford, John K B; Notarbartolo di Sciara, Giuseppe; Simmonds, Mark P; Spina, Fernando; Wade, Paul R; Whitehead, Hal; Williams, James; Garland, Ellen C.

Proc Biol Sci ; 288(1949): 20202718, 2021 04 28.

Artículo en Inglés | MEDLINE | ID: mdl-33878919

8.

Runs of homozygosity in killer whale genomes provide a global record of demographic histories.

Foote, Andrew D; Hooper, Rebecca; Alexander, Alana; Baird, Robin W; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J; Durban, John W; Esteban, Ruth; Excoffier, Laurent; Martin, Sarah L Fordyce; Forney, Karin A; Gerrodette, Tim; Gilbert, M Thomas P; Guinet, Christophe; Hanson, M Bradley; Li, Songhai; Martin, Michael D; Robertson, Kelly M; Samarra, Filipa I P; de Stephanis, Renaud; Tavares, Sara B; Tixier, Paul; Totterdell, John A; Wade, Paul; Wolf, Jochen B W; Fan, Guangyi; Zhang, Yaolei; Morin, Phillip A.

Mol Ecol ; 30(23): 6162-6177, 2021 12.

Artículo en Inglés | MEDLINE | ID: mdl-34416064

9.

SnapShot: Chromatin remodeling: CHD.

Sims, Jennifer K; Wade, Paul A.

Cell ; 144(4): 626-626.e1, 2011 Feb 18.

Artículo en Inglés | MEDLINE | ID: mdl-21335242

10.

CHD4 and the NuRD complex directly control cardiac sarcomere formation.

Wilczewski, Caralynn M; Hepperla, Austin J; Shimbo, Takashi; Wasson, Lauren; Robbe, Zachary L; Davis, Ian J; Wade, Paul A; Conlon, Frank L.

Proc Natl Acad Sci U S A ; 115(26): 6727-6732, 2018 06 26.

Artículo en Inglés | MEDLINE | ID: mdl-29891665

11.

DNA methylation and transcriptome aberrations mediated by ERα in mouse seminal vesicles following developmental DES exposure.

Li, Yin; Hamilton, Katherine J; Wang, Tianyuan; Coons, Laurel A; Jefferson, Wendy N; Li, Ruifang; Wang, Yu; Grimm, Sara A; Ramsey, J Tyler; Liu, Liwen; Gerrish, Kevin E; Williams, Carmen J; Wade, Paul A; Korach, Kenneth S.

Proc Natl Acad Sci U S A ; 115(18): E4189-E4198, 2018 05 01.

Artículo en Inglés | MEDLINE | ID: mdl-29666266

12.

The CHD4-related syndrome: a comprehensive investigation of the clinical spectrum, genotype-phenotype correlations, and molecular basis.

Weiss, Karin; Lazar, Hayley P; Kurolap, Alina; Martinez, Ariel F; Paperna, Tamar; Cohen, Lior; Smeland, Marie F; Whalen, Sandra; Heide, Solveig; Keren, Boris; Terhal, Pauline; Irving, Melita; Takaku, Motoki; Roberts, John D; Petrovich, Robert M; Schrier Vergano, Samantha A; Kenney, Amy; Hove, Hanne; DeChene, Elizabeth; Quinonez, Shane C; Colin, Estelle; Ziegler, Alban; Rumple, Melissa; Jain, Mahim; Monteil, Danielle; Roeder, Elizabeth R; Nugent, Kimberly; van Haeringen, Arie; Gambello, Michael; Santani, Avni; Medne, Livija; Krock, Bryan; Skraban, Cara M; Zackai, Elaine H; Dubbs, Holly A; Smol, Thomas; Ghoumid, Jamal; Parker, Michael J; Wright, Michael; Turnpenny, Peter; Clayton-Smith, Jill; Metcalfe, Kay; Kurumizaka, Hitoshi; Gelb, Bruce D; Baris Feldman, Hagit; Campeau, Philippe M; Muenke, Maximilian; Wade, Paul A; Lachlan, Katherine.

Genet Med ; 22(2): 389-397, 2020 02.

Artículo en Inglés | MEDLINE | ID: mdl-31388190

13.

Correction: The CHD4-related syndrome: a comprehensive investigation of the clinical spectrum, genotype-phenotype correlations, and molecular basis.

Weiss, Karin; Lazar, Hayley P; Kurolap, Alina; Martinez, Ariel F; Paperna, Tamar; Cohen, Lior; Smeland, Marie F; Whalen, Sandra; Heide, Solveig; Keren, Boris; Terhal, Pauline; Irving, Melita; Takaku, Motoki; Roberts, John D; Petrovich, Robert M; Vergano, Samantha A Schrier; Kenney, Amy; Hove, Hanne; DeChene, Elizabeth; Quinonez, Shane C; Colin, Estelle; Ziegler, Alban; Rumple, Melissa; Jain, Mahim; Monteil, Danielle; Roeder, Elizabeth R; Nugent, Kimberly; van Haeringen, Arie; Gambello, Michael; Santani, Avni; Medne, Livija; Krock, Bryan; Skraban, Cara M; Zackai, Elaine H; Dubbs, Holly A; Smol, Thomas; Ghoumid, Jamal; Parker, Michael J; Wright, Michael; Turnpenny, Peter; Clayton-Smith, Jill; Metcalfe, Kay; Kurumizaka, Hitoshi; Gelb, Bruce D; Feldman, Hagit Baris; Campeau, Philippe M; Muenke, Maximilian; Wade, Paul A; Lachlan, Katherine.

Genet Med ; 22(3): 669, 2020 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-31844176

14.

R loops: lassoing DNA methylation at CpGi.

Vertino, Paula M; Wade, Paul A.

Mol Cell ; 45(6): 708-9, 2012 Mar 30.

Artículo en Inglés | MEDLINE | ID: mdl-22464440

15.

Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin.

Hooper, Rebecca; Brealey, Jaelle C; van der Valk, Tom; Alberdi, Antton; Durban, John W; Fearnbach, Holly; Robertson, Kelly M; Baird, Robin W; Bradley Hanson, M; Wade, Paul; Gilbert, M Thomas P; Morin, Phillip A; Wolf, Jochen B W; Foote, Andrew D; Guschanski, Katerina.

Mol Ecol ; 28(2): 484-502, 2019 01.

Artículo en Inglés | MEDLINE | ID: mdl-30187987

16.

Killer whale genomes reveal a complex history of recurrent admixture and vicariance.

Foote, Andrew D; Martin, Michael D; Louis, Marie; Pacheco, George; Robertson, Kelly M; Sinding, Mikkel-Holger S; Amaral, Ana R; Baird, Robin W; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dabin, Willy; Dalla Rosa, Luciano; Davison, Nicholas J; Durban, John W; Esteban, Ruth; Ferguson, Steven H; Gerrodette, Tim; Guinet, Christophe; Hanson, M Bradley; Hoggard, Wayne; Matthews, Cory J D; Samarra, Filipa I P; de Stephanis, Renaud; Tavares, Sara B; Tixier, Paul; Totterdell, John A; Wade, Paul; Excoffier, Laurent; Gilbert, M Thomas P; Wolf, Jochen B W; Morin, Phillip A.

Mol Ecol ; 28(14): 3427-3444, 2019 07.

Artículo en Inglés | MEDLINE | ID: mdl-31131963

17.

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.

Li, Pishun; Wang, Li; Bennett, Brian D; Wang, Jiajia; Li, Jialun; Qin, Yufeng; Takaku, Motoki; Wade, Paul A; Wong, Jiemin; Hu, Guang.

Nucleic Acids Res ; 45(22): 12723-12738, 2017 Dec 15.

Artículo en Inglés | MEDLINE | ID: mdl-29040764

18.

Nonclinical Cardiovascular Studies of Prucalopride, a Highly Selective 5-Hydroxytryptamine 4 Receptor Agonist.

Conlon, Kelly; De Maeyer, Joris H; Bruce, Chris; Schuurkes, Jan A J; Christie, Lee; McRedmond, James; Derakhchan, Katayoun; Wade, Paul R.

J Pharmacol Exp Ther ; 364(2): 156-169, 2018 02.

Artículo en Inglés | MEDLINE | ID: mdl-29180358

19.

DNA Methylation Changes in Tbx3 in a Mouse Model Exposed to Polybrominated Diphenyl Ethers.

Shimbo, Takashi; Dunnick, June K; Brix, Amy; Mav, Deepak; Shah, Ruchir; Roberts, John D; Wade, Paul A.

Int J Toxicol ; 36(3): 229-238, 2017.

Artículo en Inglés | MEDLINE | ID: mdl-28466692

20.

Human tRNA genes function as chromatin insulators.

Raab, Jesse R; Chiu, Jonathan; Zhu, Jingchun; Katzman, Sol; Kurukuti, Sreenivasulu; Wade, Paul A; Haussler, David; Kamakaka, Rohinton T.

EMBO J ; 31(2): 330-50, 2012 Jan 18.

Artículo en Inglés | MEDLINE | ID: mdl-22085927

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