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1.
Cell ; 176(3): 520-534.e25, 2019 01 24.
Artículo en Inglés | MEDLINE | ID: mdl-30661750

RESUMEN

Elucidating the global and local rules that govern genome-wide, hierarchical chromatin architecture remains a critical challenge. Current high-throughput chromosome conformation capture (Hi-C) technologies have identified large-scale chromatin structural motifs, such as topologically associating domains and looping. However, structural rules at the smallest or nucleosome scale remain poorly understood. Here, we coupled nucleosome-resolved Hi-C technology with simulated annealing-molecular dynamics (SA-MD) simulation to reveal 3D spatial distributions of nucleosomes and their genome-wide orientation in chromatin. Our method, called Hi-CO, revealed distinct nucleosome folding motifs across the yeast genome. Our results uncovered two types of basic secondary structural motifs in nucleosome folding: α-tetrahedron and ß-rhombus analogous to α helix and ß sheet motifs in protein folding. Using mutants and cell-cycle-synchronized cells, we further uncovered motifs with specific nucleosome positioning and orientation coupled to epigenetic features at individual loci. By illuminating molecular-level structure-function relationships in eukaryotic chromatin, our findings establish organizational principles of nucleosome folding.


Asunto(s)
Cromatina/ultraestructura , Nucleosomas/ultraestructura , Cromatina/genética , Cromatina/metabolismo , Ensamble y Desensamble de Cromatina/fisiología , Cromosomas/metabolismo , Cromosomas/ultraestructura , Nucleosomas/genética , Nucleosomas/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Sitio de Iniciación de la Transcripción
2.
J Cell Sci ; 2024 Jun 28.
Artículo en Inglés | MEDLINE | ID: mdl-38940185

RESUMEN

Mitochondrial biogenesis relies on hundreds of proteins that are derived from genes encoded in the nucleus. According to characteristic properties of N-terminal targeting peptides (TP) and multi-step authentication by the protein translocase called the TOM complex, nascent polypeptides satisfying the requirements are imported into mitochondria. However, it is unknown whether eukaryotic cells with a single mitochondrion per cell have a similar complexity of presequence requirements for mitochondrial protein import compared to other eukaryotes with multiple mitochondria. Based on putative mitochondrial TP sequences in the unicellular red alga Cyanidioschyzon merolae, we designed synthetic TPs (synTPs) and showed that functional TPs must have at least one basic residue and a specific amino acid composition, although their physicochemical properties are not strictly determined. Combined with the simple composition of the TOM complex in C. merolae, our results suggest that a regional positive charge in TP is verified solely by TOM22 for mitochondrial protein import in C. merolae. The simple authentication mechanism indicates that the monomitochondrial C. merolae does not need to increase the cryptographic complexity of the lock-and-key mechanism for mitochondrial protein import.

3.
J Cell Sci ; 134(21)2021 11 01.
Artículo en Inglés | MEDLINE | ID: mdl-34633046

RESUMEN

The unicellular alga Cyanidioschyzon merolae has a simple cellular structure; each cell has one nucleus, one mitochondrion, one chloroplast and one peroxisome. This simplicity offers unique advantages for investigating organellar proliferation and the cell cycle. Here, we describe CZON-cutter, an engineered clustered, regularly interspaced, short palindromic repeats (CRISPR)/CRISPR-associated nuclease 9 (Cas9) system for simultaneous genome editing and organellar visualization. We engineered a C. merolae strain expressing a nuclear-localized Cas9-Venus nuclease for targeted editing of any locus defined by a single-guide RNA (sgRNA). We then successfully edited the algal genome and visualized the mitochondrion and peroxisome in transformants using fluorescent protein reporters with different excitation wavelengths. Fluorescent protein labeling of organelles in living transformants allows us to validate phenotypes associated with organellar proliferation and the cell cycle, even when the edited gene is essential. Combined with the exceptional biological features of C. merolae, CZON-cutter will be instrumental for investigating cellular and organellar division in a high-throughput manner. This article has an associated First Person interview with the first author of the paper.


Asunto(s)
Sistemas CRISPR-Cas , Rhodophyta , Sistemas CRISPR-Cas/genética , Núcleo Celular/genética , Edición Génica , Humanos , ARN Guía de Kinetoplastida
4.
Proc Natl Acad Sci U S A ; 114(50): 13284-13289, 2017 12 12.
Artículo en Inglés | MEDLINE | ID: mdl-29180407

RESUMEN

Mitochondria, which evolved from a free-living bacterial ancestor, contain their own genomes and genetic systems and are produced from preexisting mitochondria by binary division. The mitochondrion-dividing (MD) ring is the main skeletal structure of the mitochondrial division machinery. However, the assembly mechanism and molecular identity of the MD ring are unknown. Multi-omics analysis of isolated mitochondrial division machinery from the unicellular alga Cyanidioschyzon merolae revealed an uncharacterized glycosyltransferase, MITOCHONDRION-DIVIDING RING1 (MDR1), which is specifically expressed during mitochondrial division and forms a single ring at the mitochondrial division site. Nanoscale imaging using immunoelectron microscopy and componential analysis demonstrated that MDR1 is involved in MD ring formation and that the MD ring filaments are composed of glycosylated MDR1 and polymeric glucose nanofilaments. Down-regulation of MDR1 strongly interrupted mitochondrial division and obstructed MD ring assembly. Taken together, our results suggest that MDR1 mediates the synthesis of polyglucan nanofilaments that assemble to form the MD ring. Given that a homolog of MDR1 performs similar functions in chloroplast division, the establishment of MDR1 family proteins appears to have been a singular, crucial event for the emergence of endosymbiotic organelles.


Asunto(s)
Glicosiltransferasas/metabolismo , Biogénesis de Organelos , Proteínas de Plantas/metabolismo , Rhodophyta/metabolismo , Glucanos/metabolismo , Glicosiltransferasas/genética , Mitocondrias/metabolismo , Mitocondrias/fisiología , Mitocondrias/ultraestructura , Proteínas de Plantas/genética , Rhodophyta/ultraestructura
5.
J Plant Res ; 132(2): 297-298, 2019 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-30805737

RESUMEN

The article The cellular machineries responsible for the division of endosymbiotic organelles, written by Yamato Yoshida was originally published electronically on the publisher's internet portal (currently SpringerLink) on 12 June 2018 without open access.

6.
J Plant Res ; 131(5): 727-734, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-29948488

RESUMEN

Chloroplasts (plastids) and mitochondria evolved from endosymbiotic bacteria. These organelles perform vital functions in photosynthetic eukaryotes, such as harvesting and converting energy for use in biological processes. Consistent with their evolutionary origins, plastids and mitochondria proliferate by the binary fission of pre-existing organelles. Here, I review the structures and functions of the supramolecular machineries driving plastid and mitochondrial division, which were discovered and first studied in the primitive red alga Cyanidioschyzon merolae. In the past decade, intact division machineries have been isolated from plastids and mitochondria and examined to investigate their underlying structure and molecular mechanisms. A series of studies has elucidated how these division machineries assemble and transform during the fission of these organelles, and which of the component proteins generate the motive force for their contraction. Plastid- and mitochondrial-division machineries have important similarities in their structures and mechanisms despite sharing no component proteins, implying that these division machineries evolved in parallel. The establishment of these division machineries might have enabled the host eukaryotic ancestor to permanently retain these endosymbiotic organelles by regulating their binary fission and the equal distribution of resources to daughter cells. These findings provide key insights into the establishment of endosymbiotic organelles and have opened new avenues of research into their evolution and mechanisms of proliferation.


Asunto(s)
Orgánulos/ultraestructura , Rhodophyta/ultraestructura , Simbiosis , División Celular , Cloroplastos/fisiología , Cloroplastos/ultraestructura , Mitocondrias/fisiología , Mitocondrias/ultraestructura , Orgánulos/fisiología , Plastidios/fisiología , Plastidios/ultraestructura , Rhodophyta/fisiología
7.
Int J Mol Sci ; 19(3)2018 Mar 04.
Artículo en Inglés | MEDLINE | ID: mdl-29510533

RESUMEN

The endosymbiosis of a free-living cyanobacterium into an ancestral eukaryote led to the evolution of the chloroplast (plastid) more than one billion years ago. Given their independent origins, plastid proliferation is restricted to the binary fission of pre-existing plastids within a cell. In the last 25 years, the structure of the supramolecular machinery regulating plastid division has been discovered, and some of its component proteins identified. More recently, isolated plastid-division machineries have been examined to elucidate their structural and mechanistic details. Furthermore, complex studies have revealed how the plastid-division machinery morphologically transforms during plastid division, and which of its component proteins play a critical role in generating the contractile force. Identifying the three-dimensional structures and putative functional domains of the component proteins has given us hints about the mechanisms driving the machinery. Surprisingly, the mechanisms driving plastid division resemble those of mitochondrial division, indicating that these division machineries likely developed from the same evolutionary origin, providing a key insight into how endosymbiotic organelles were established. These findings have opened new avenues of research into organelle proliferation mechanisms and the evolution of organelles.


Asunto(s)
Cloroplastos/metabolismo , Biogénesis de Organelos , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Cloroplastos/fisiología , Dinaminas/química , Dinaminas/genética , Dinaminas/metabolismo
8.
Proc Natl Acad Sci U S A ; 110(23): 9583-8, 2013 Jun 04.
Artículo en Inglés | MEDLINE | ID: mdl-23696667

RESUMEN

Peroxisomes (microbodies) are ubiquitous single-membrane-bounded organelles and fulfill essential roles in the cellular metabolism. They are found in virtually all eukaryotic cells and basically multiply by division. However, the mechanochemical machinery involved in peroxisome division remains elusive. Here, we first identified the peroxisome-dividing (POD) machinery. We isolated the POD machinery from Cyanidioschyzon merolae, a unicellular red alga containing a single peroxisome. Peroxisomal division in C. merolae can be highly synchronized by light/dark cycles and the microtubule-disrupting agent oryzalin. By proteomic analysis based on the complete genome sequence of C. merolae, we identified a dynamin-related protein 3 (DRP3) ortholog, CmDnm1 (Dnm1), that predominantly accumulated with catalase in the dividing-peroxisome fraction. Immunofluorescence microscopy demonstrated that Dnm1 formed a ring at the division site of the peroxisome. The outlines of the isolated dynamin rings were dimly observed by phase-contrast microscopy and clearly stained for Dnm1. Electron microscopy revealed that the POD machinery was formed at the cytoplasmic side of the equator. Immunoelectron microscopy showed that the POD machinery consisted of an outer dynamin-based ring and an inner filamentous ring. Down-regulation of Dnm1 impaired peroxisomal division. Surprisingly, the same Dnm1 serially controlled peroxisomal division after mitochondrial division. Because genetic deficiencies of Dnm1 orthologs in multiperoxisomal organisms inhibited both mitochondrial and peroxisomal proliferation, it is thought that peroxisomal division by contraction of a dynamin-based machinery is universal among eukaryotes. These findings are useful for understanding the fundamental systems in eukaryotic cells.


Asunto(s)
Dinamina I/metabolismo , Peroxisomas/fisiología , Rhodophyta/fisiología , Catalasa/metabolismo , Dinitrobencenos , Regulación hacia Abajo , Dinamina I/genética , Immunoblotting , Microscopía Fluorescente , Microscopía Inmunoelectrónica , Peroxisomas/ultraestructura , Proteómica , Rhodophyta/genética , Rhodophyta/ultraestructura , Sulfanilamidas
9.
J Cell Sci ; 126(Pt 11): 2392-400, 2013 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-23549784

RESUMEN

The cell cycle usually refers to the mitotic cycle, but the cell-division cycle in the plant kingdom consists of not only nuclear but also mitochondrial and chloroplast division cycle. However, an integrated control system that initiates division of the three organelles has not been found. We report that a novel C-terminal kinesin-like protein, three-organelle division-inducing protein (TOP), controls nuclear, mitochondrial and chloroplast divisions in the red alga Cyanidioschyzon merolae. A proteomics study revealed that TOP is a member of a complex of mitochondrial-dividing (MD) and plastid-dividing (PD) machineries (MD/PD machinery complex) just prior to constriction. After TOP localizes at the MD/PD machinery complex, mitochondrial and chloroplast divisions occur and the components of the MD/PD machinery complexes are phosphorylated. Furthermore, we found that TOP downregulation impaired both mitochondrial and chloroplast divisions. MD/PD machinery complexes were formed normally at each division site but they were neither phosphorylated nor constricted in these cells. Immunofluorescence signals of Aurora kinase (AUR) were localized around the MD machinery before constriction, whereas AUR was dispersed in the cytosol by TOP downregulation, suggesting that AUR is required for the constriction. Taken together our results suggest that TOP induces phosphorylation of MD/PD machinery components to accomplish mitochondrial and chloroplast divisions prior to nuclear division, by relocalization of AUR. In addition, given the presence of TOP homologs throughout the eukaryotes, and the involvement of TOP in mitochondrial and chloroplast division may illuminate the original function of C-terminal kinesin-like proteins.


Asunto(s)
División del Núcleo Celular/fisiología , Proteínas de Cloroplastos/metabolismo , Cloroplastos/metabolismo , Cinesinas/metabolismo , Mitocondrias/metabolismo , Proteínas Mitocondriales/metabolismo , Proteínas Serina-Treonina Quinasas/metabolismo , Rhodophyta/metabolismo , Aurora Quinasas , Proteínas de Cloroplastos/genética , Cloroplastos/genética , Cinesinas/genética , Mitocondrias/genética , Proteínas Mitocondriales/genética , Proteínas Serina-Treonina Quinasas/genética , Transporte de Proteínas/fisiología , Rhodophyta/genética
10.
Plant Cell ; 22(3): 772-81, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-20348431

RESUMEN

Vacuoles/lysosomes function in endocytosis and in storage and digestion of metabolites. These organelles are inherited by the daughter cells in eukaryotes. However, the mechanisms of this inheritance are poorly understood because the cells contain multiple vacuoles that behave randomly. The primitive red alga Cyanidioschyzon merolae has a minimum set of organelles. Here, we show that C. merolae contains about four vacuoles that are distributed equally between the daughter cells by binding to dividing mitochondria. Binding is mediated by VIG1, a 30-kD coiled-coil protein identified by microarray analyses and immunological assays. VIG1 appears on the surface of free vacuoles in the cytosol and then tethers the vacuoles to the mitochondria. The vacuoles are released from the mitochondrion in the daughter cells following VIG1 digestion. Suppression of VIG1 by antisense RNA disrupted the migration of vacuoles. Thus, VIG1 is essential for tethering vacuoles to mitochondria during vacuole inheritance in C. merolae.


Asunto(s)
Proteínas Algáceas/metabolismo , Mitocondrias/metabolismo , Rhodophyta/genética , Vacuolas/metabolismo , Proteínas Algáceas/genética , Ciclo Celular , Perfilación de la Expresión Génica , Microscopía Electrónica de Transmisión , Rhodophyta/metabolismo , Análisis de Secuencia de Proteína , Vacuolas/ultraestructura
11.
J Electron Microsc (Tokyo) ; 60 Suppl 1: S117-36, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21844584

RESUMEN

It is generally believed that the cell cycle consists essentially of the mitotic cycle, which involves mitosis and cytokinesis. These processes are becoming increasingly well understood at the molecular level. However, successful cell reproduction requires duplication and segregation (inheritance) of all of the cellular contents, including not only the cell-nuclear genome but also intracellular organelles. Eukaryotic cells contain at least three types of double membrane-bounded organelles (cell nucleus, mitochondria and plastids), four types of single membrane-bounded organelles (endoplasmic reticulum, Golgi apparatus, lysosomes and microbodies) and the cytoskeleton, which comprises tubulin-based structures (including microtubules, centrosome and spindle) and actin microfilaments. These membrane-bounded organelles cannot be formed de novo and daughter organelles must be inherited from parent organelles during cell cycle. Regulation of organelle division and its coordination with the progression of the cell cycle involves a sequence of events that are subjected to precise spatio-temporal control. Considering that the cells of higher animals and plants contain many organelles which tend to behave somewhat randomly, there is little information concerning the division and inheritance of these double- and single-membrane-bounded organelles during the cell cycle. Here, we summarize the current cytological and morphological knowledge of the cell cycle, including the division cycles of seven membrane-bounded and some non-membrane-bounded organelles. The underlying mechanisms and the biological relevance of these processes are discussed, particularly with respect to cells of the primitive alga Cyanidioschyzon merolae that have a minimum of organelles. We discuss unsolved problems and future perspectives opened by recent studies.


Asunto(s)
Ciclo Celular/fisiología , División Celular , Mitosis/fisiología , Animales , Centrosoma/fisiología , Cloroplastos/genética , Cloroplastos/metabolismo , Cloroplastos/fisiología , Citocinesis , Citoesqueleto/genética , Citoesqueleto/metabolismo , Citoesqueleto/fisiología , Aparato de Golgi/genética , Aparato de Golgi/metabolismo , Aparato de Golgi/fisiología , Humanos , Mitocondrias/genética , Mitocondrias/metabolismo , Mitocondrias/fisiología , Rhodophyta/citología
12.
Plant J ; 60(5): 882-93, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19709388

RESUMEN

Plant vacuoles are organelles bound by a single membrane, and involved in various functions such as intracellular digestion, metabolite storage, and secretion. To understand their evolution and fundamental mechanisms, characterization of vacuoles in primitive plants would be invaluable. Algal cells often contain polyphosphate-rich compartments, which are thought to be the counterparts of seed plant vacuoles. Here, we developed a method for isolating these vacuoles from Cyanidioschyzon merolae, and identified their proteins by MALDI TOF-MS. The vacuoles were of unexpectedly high density, and were highly enriched at the boundary between 62 and 80% w/v iodixanol by density-gradient ultracentrifugation. The vacuole-containing fraction was subjected to SDS-PAGE, and a total of 46 proteins were identified, including six lytic enzymes, 13 transporters, six proteins for membrane fusion or vesicle trafficking, five non-lytic enzymes, 13 proteins of unknown function, and three miscellaneous proteins. Fourteen proteins were homologous to known vacuolar or lysosomal proteins from seed plants, yeasts or mammals, suggesting functional and evolutionary relationships between C. merolae vacuoles and these compartments. The vacuolar localization of four novel proteins, namely CMP249C (metallopeptidase), CMJ260C (prenylated Rab receptor), CMS401C (ABC transporter) and CMT369C (o-methyltransferase), was confirmed by labeling with specific antibodies or transient expression of hemagglutinin-tagged proteins. The results presented here provide insights into the proteome of C. merolae vacuoles and shed light on their functions, as well as indicating new features.


Asunto(s)
Proteínas Algáceas/metabolismo , Rhodophyta/metabolismo , Vacuolas/metabolismo , Proteínas Algáceas/análisis , Proteínas Algáceas/química , Electroforesis en Gel de Poliacrilamida , Genoma , Polifosfatos/metabolismo , Proteoma , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Vacuolas/química , Vacuolas/ultraestructura
13.
Nature ; 428(6983): 653-7, 2004 Apr 08.
Artículo en Inglés | MEDLINE | ID: mdl-15071595

RESUMEN

Small, compact genomes of ultrasmall unicellular algae provide information on the basic and essential genes that support the lives of photosynthetic eukaryotes, including higher plants. Here we report the 16,520,305-base-pair sequence of the 20 chromosomes of the unicellular red alga Cyanidioschyzon merolae 10D as the first complete algal genome. We identified 5,331 genes in total, of which at least 86.3% were expressed. Unique characteristics of this genomic structure include: a lack of introns in all but 26 genes; only three copies of ribosomal DNA units that maintain the nucleolus; and two dynamin genes that are involved only in the division of mitochondria and plastids. The conserved mosaic origin of Calvin cycle enzymes in this red alga and in green plants supports the hypothesis of the existence of single primary plastid endosymbiosis. The lack of a myosin gene, in addition to the unexpressed actin gene, suggests a simpler system of cytokinesis. These results indicate that the C. merolae genome provides a model system with a simple gene composition for studying the origin, evolution and fundamental mechanisms of eukaryotic cells.


Asunto(s)
Genoma , Rhodophyta/genética , Actinas/genética , Proteínas Algáceas/clasificación , Proteínas Algáceas/genética , Núcleo Celular/genética , Cromosomas/genética , ADN Mitocondrial/genética , ADN Ribosómico/genética , Evolución Molecular , Genómica , Intrones/genética , Datos de Secuencia Molecular , Plastidios/genética , Plastidios/fisiología , Rhodophyta/citología , Análisis de Secuencia de ADN
14.
Plant Cell Rep ; 28(12): 1881-93, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19859717

RESUMEN

The ability of the primitive red alga Cyanidioschyzon merolae to adapt to high temperatures was utilized to produce thermotolerant transgenic plants. C. merolae inhabits an extreme environment (42 degrees C, pH 2.5) and the nuclear, mitochondrial, and plastid genomes have been sequenced. We analyzed expressed sequence tag (EST) data to reveal mechanisms of tolerance to high temperatures. The stromal ascorbate peroxidase (CmstAPX) that scavenges reactive oxygen species (ROS) was expressed at high levels (4th of 4,479 entries), thus, it offers clues to understanding high-temperature tolerance. CmstAPX has a chloroplast transit peptide (cTP) and a peroxidase domain. The peroxidase domain of CmstAPX has deletions and insertions when compared with that of Arabidopsis thaliana stromal APX (AtstAPX). To clarify aspects of tolerance to oxidative and high-temperature stress, we produced transgenic A. thaliana plants overexpressing CmstAPX and AtstAPX. CmstAPX plants showed higher activities of soluble APX than those of wild-type and AtstAPX plants. Fluorescence signals of a GFP fusion protein, immuno-fluorescence, and immunogold electron microscopy showed that CmstAPX was localized in the stroma of chloroplasts. Compared with wild-type plants and AtstAPX plants, CmstAPX plants were more tolerant to oxidative stress induced by methylviologen (MV, 0.4 muM) and high-temperature stress (33 degrees C). CmstAPX plants retained the highest chlorophyll content when treated with MV and high temperature, and their stroma and chloroplasts remained intact in their chloroplasts, whereas they disintegrated in wild-type plants. Our results suggest that the increased activity of APX in the chloroplasts of CmstAPX plants increased thermotolerance by increasing ROS-scavenging capacity at high temperatures.


Asunto(s)
Adaptación Fisiológica , Arabidopsis/genética , Peroxidasas/metabolismo , Rhodophyta/enzimología , Temperatura , Adaptación Fisiológica/efectos de los fármacos , Secuencia de Aminoácidos , Arabidopsis/citología , Arabidopsis/efectos de los fármacos , Arabidopsis/ultraestructura , Ascorbato Peroxidasas , Cloroplastos/efectos de los fármacos , Cloroplastos/ultraestructura , Etiquetas de Secuencia Expresada , Vectores Genéticos/genética , Proteínas Fluorescentes Verdes/metabolismo , Isoenzimas/metabolismo , Microscopía Fluorescente , Datos de Secuencia Molecular , Estrés Oxidativo/efectos de los fármacos , Paraquat/farmacología , Peroxidasas/química , Peroxidasas/genética , Peroxidasas/ultraestructura , Plantas Modificadas Genéticamente , Transporte de Proteínas/efectos de los fármacos , Especies Reactivas de Oxígeno/metabolismo , Semillas/efectos de los fármacos , Semillas/genética , Estrés Fisiológico/efectos de los fármacos , Fracciones Subcelulares/efectos de los fármacos , Fracciones Subcelulares/metabolismo
15.
Microscopy (Oxf) ; 68(1): 45-56, 2019 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-30476140

RESUMEN

Plastids and mitochondria are thought to have originated from free-living cyanobacterial and alpha-proteobacterial ancestors, respectively, via endosymbiosis. Their evolutionary origins dictate that these organelles do not multiply de novo but through the division of pre-existing plastids and mitochondria. Over the past three decades, studies have shown that plastid and mitochondrial division are performed by contractile ring-shaped structures, broadly termed the plastid and mitochondrial-division machineries. Interestingly, the division machineries are hybrid forms of the bacterial cell division system and eukaryotic membrane fission system. The structure and function of the plastid and mitochondrial-division machineries are similar to each other, implying that the division machineries evolved in parallel since their establishment in primitive eukaryotes. Compared with our knowledge of their structures, our understanding of the mechanical details of how these division machineries function is still quite limited. Here, we review and compare the structural frameworks of the plastid and mitochondrial-division machineries in both lower and higher eukaryotes. Then, we highlight fundamental issues that need to be resolved to reveal the underlying mechanisms of plastid and mitochondrial division. Finally, we highlight related studies that point to an exciting future for the field.


Asunto(s)
División Celular/fisiología , Mitocondrias/fisiología , Plastidios/fisiología , Arabidopsis/crecimiento & desarrollo , Chlorophyta/crecimiento & desarrollo , Rhodophyta/crecimiento & desarrollo , Simbiosis
16.
Nat Plants ; 5(1): 119, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30542089

RESUMEN

In the version of this Article originally published, the authors incorrectly referred to the fluorescent protein Venus being used in their study; the actual one used was enhanced yellow fluorescence protein (eYFP).

17.
BMC Biol ; 5: 28, 2007 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-17623057

RESUMEN

BACKGROUND: All previously reported eukaryotic nuclear genome sequences have been incomplete, especially in highly repeated units and chromosomal ends. Because repetitive DNA is important for many aspects of biology, complete chromosomal structures are fundamental for understanding eukaryotic cells. Our earlier, nearly complete genome sequence of the hot-spring red alga Cyanidioschyzon merolae revealed several unique features, including just three ribosomal DNA copies, very few introns, and a small total number of genes. However, because the exact structures of certain functionally important repeated elements remained ambiguous, that sequence was not complete. Obviously, those ambiguities needed to be resolved before the unique features of the C. merolae genome could be summarized, and the ambiguities could only be resolved by completing the sequence. Therefore, we aimed to complete all previous gaps and sequence all remaining chromosomal ends, and now report the first nuclear-genome sequence for any eukaryote that is 100% complete. RESULTS: Our present complete sequence consists of 16546747 nucleotides covering 100% of the 20 linear chromosomes from telomere to telomere, representing the simple and unique chromosomal structures of the eukaryotic cell. We have unambiguously established that the C. merolae genome contains the smallest known histone-gene cluster, a unique telomeric repeat for all chromosomal ends, and an extremely low number of transposons. CONCLUSION: By virtue of these attributes and others that we had discovered previously, C. merolae appears to have the simplest nuclear genome of the non-symbiotic eukaryotes. These unusually simple genomic features in the 100% complete genome sequence of C. merolae are extremely useful for further studies of eukaryotic cells.


Asunto(s)
ADN de Algas/genética , Genoma , Manantiales de Aguas Termales/microbiología , Rhodophyta/genética , Secuencia de Bases , Mapeo Cromosómico , Elementos Transponibles de ADN/genética , ADN de Algas/química , Células Eucariotas/metabolismo , Genómica/métodos , Histonas/genética , Modelos Genéticos , Datos de Secuencia Molecular , Familia de Multigenes , Análisis de Secuencia de ADN , Telómero/genética
18.
Biochim Biophys Acta ; 1763(5-6): 510-21, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-16690143

RESUMEN

Mitochondria are derived from free-living alpha-proteobacteria that were engulfed by eukaryotic host cells through the process of endosymbiosis, and therefore have their own DNA which is organized using basic proteins to form organelle nuclei (nucleoids). Mitochondria divide and are split amongst the daughter cells during cell proliferation. Their division can be separated into two main events: division of the mitochondrial nuclei and division of the matrix (the so-called mitochondrial division, or mitochondriokinesis). In this review, we first focus on the cytogenetical relationships between mitochondrial nuclear division and mitochondriokinesis. Mitochondriokinesis occurs after mitochondrial nuclear division, similar to bacterial cytokinesis. We then describe the fine structure and dynamics of the mitochondrial division ring (MD ring) as a basic morphological background for mitochondriokinesis. Electron microscopy studies first identified a small electron-dense MD ring in the cytoplasm at the constriction sites of dividing mitochondria in the slime mold Physarum polycephalum, and then two large MD rings (with outer cytoplasmic and inner matrix sides) in the red alga Cyanidioschyzon merolae. Now MD rings have been found in all eukaryotes. In the third section, we describe the relationships between the MD ring and the FtsZ ring descended from ancestral bacteria. Other than the GTPase, FtsZ, mitochondria have lost most of the proteins required for bacterial cytokinesis as a consequence of endosymbiosis. The FtsZ protein forms an electron transparent ring (FtsZ or Z ring) in the matrix inside the inner MD ring. For the fourth section, we describe the dynamic association between the outer MD ring with a ring composed of the eukaryote-specific GTPase dynamin. Recent studies have revealed that eukaryote-specific GTPase dynamins form an electron transparent ring between the outer membrane and the MD ring. Thus, mitochondriokinesis is thought to be controlled by a mitochondrial division (MD) apparatus including a dynamic trio, namely the FtsZ, MD and dynamin rings, which consist of a chimera of rings from bacteria and eukaryotes in primitive organisms. Since the genes for the MD ring and dynamin rings are not found in the prokaryotic genome, the host genomes may make these rings to actively control mitochondrial division. In the fifth part, we focus on the dynamic changes in the formation and disassembly of the FtsZ, MD and dynamin rings. FtsZ rings are digested during a later period of mitochondrial division and then finally the MD and dynamin ring apparatuses pinched off the daughter mitochondria, supporting the idea that the host genomes are responsible for the ultimate control of mitochondrial division. We discuss the evolution, from the original vesicle division (VD) apparatuses to VD apparatuses including classical dynamin rings and MD apparatuses. It is likely that the MD apparatuses involving the dynamic trio evolved into the plastid division (PD) apparatus in Bikonta, while in Opisthokonta, the MD apparatus was simplified during evolution and may have branched into the mitochondrial fusion apparatus. Finally, we describe the possibility of intact isolation of large MD/PD apparatuses, the identification of all their proteins and their related genes using C. merolae genome information and TOF-MS analyses. These results will assist in elucidating the universal mechanism and evolution of MD, PD and VD apparatuses.


Asunto(s)
Evolución Biológica , Mitocondrias/fisiología , Animales , Dinaminas/metabolismo , Endocitosis , Mitocondrias/ultraestructura , Plastidios/metabolismo
19.
Nat Plants ; 2: 16095, 2016 06 20.
Artículo en Inglés | MEDLINE | ID: mdl-27322658

RESUMEN

Chloroplast division is driven by a ring containing FtsZ1 and FtsZ2 proteins, which originated from bacterial FtsZ, a tubulin-like protein; however, mechanistic details of the chloroplast FtsZ ring remain unclear. Here, we report that FtsZ1 and FtsZ2 can heteropolymerize into a contractible ring ex vivo. Fluorescently labelled FtsZ1 and/or FtsZ2 formed single rings in cells of the yeast Pichia pastoris. Photobleaching experiments indicated that co-assembly of FtsZ1 and FtsZ2 imparts polarity to polymerization. Assembly of FtsZ chimaeras revealed that the protofilaments assemble via heteropolymerization of FtsZ2 and FtsZ1. Contraction of the ring was accompanied by an increase in the filament turnover rate. Our findings suggest that the evolutionary duplication of FtsZ in plants may have increased the mobility and kinetics of FtsZ ring dynamics in chloroplast division. Thus, the gene duplication and heteropolymerization of chloroplast FtsZs may represent convergent evolution with eukaryotic tubulin.


Asunto(s)
Proteínas de Arabidopsis/genética , Arabidopsis/genética , Proteínas de Cloroplastos/genética , Arabidopsis/metabolismo , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/metabolismo , Proteínas de Cloroplastos/química , Proteínas de Cloroplastos/metabolismo , Organismos Modificados Genéticamente/genética , Pichia/genética , Polimerizacion
20.
Curr Opin Cell Biol ; 25(4): 461-70, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23711622

RESUMEN

FtsZ is a key cytoskeletal component of the chloroplast division machinery that arose from the related cell division FtsZ in the cyanobacterial ancestor of chloroplasts. FtsZ is widely conserved in photosynthetic eukaryotes, where it forms a ring inside the organelle at the chloroplast division site. A distinctive feature of chloroplast division systems is the evolution of two phylogenetically and structurally distinct FtsZ families by independent gene duplications in different photosynthetic lineages. While many functional aspects of these proteins remain unknown, recent studies on the biochemical and dynamic properties of FtsZs from land plants, in combination with ongoing research on bacterial FtsZs, have begun to suggest mechanisms by which two functionally distinct FtsZ proteins may cooperate to drive chloroplast division.


Asunto(s)
Proteínas de Cloroplastos/genética , Cloroplastos/genética , Evolución Molecular , Plantas/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Proteínas de Cloroplastos/química , Proteínas de Cloroplastos/metabolismo , Cloroplastos/metabolismo , Cianobacterias/citología , Cianobacterias/genética , Duplicación de Gen , Fotosíntesis , Células Vegetales/metabolismo
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