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1.
Respir Res ; 25(1): 184, 2024 Apr 25.
Artículo en Inglés | MEDLINE | ID: mdl-38664656

RESUMEN

BACKGROUND: In conventional practice, the left double lumen tube (DLT) is rotated 90° counterclockwise when the endobronchial cuff passes glottis. Success rate upon the first attempt is < 80%, likely owing to varying morphology of the bronchial bifurcation. METHODS: We conducted a randomized controlled trial to compare 90° counterclockwise rotation versus individualized degree of rotation in adult patients undergoing elective thoracic surgery using left DLT. The degree of rotation in the individualized group was based on the angle of the left main bronchi as measured on computed tomography (CT). The primary outcome was the first attempt left DLT placement success rate. RESULTS: A total of 556 patients were enrolled: 276 in the control group and 280 in the individualized group. The average angle of the left main bronchi was 100.6±9.5° (range 72° to 119°). The first attempt left DLT placement success rate was 82.6% (228/276) in the control group versus 91.4% (256/280) in the individualized group (P=0.02, χ2 test). The rate of carina mucosal injury, as measured at 30 min after the start of surgery under fibreoptic bronchoscopy, was significantly lower in individualized group than control group (14.0% versus 19.6%, P=0.041). The individualized group also had lower rate of postoperative sore throat (29.4% versus 44.0%, P<0.001) and hoarseness (16.8% versus 24.7%, P<0.05). CONCLUSIONS: Individualized rotation of left DLT based on the angle of the left main bronchi on preoperative CT increased first attempt success rate in adult patients undergoing elective thoracic surgery. TRIAL REGISTRATION: The trial is registered at Chinese Clinical Trial Registry (ChiCTR2100053349; principal investigator Xiang Quan, date of registration November 19, 2021).


Asunto(s)
Intubación Intratraqueal , Humanos , Masculino , Femenino , Persona de Mediana Edad , Anciano , Intubación Intratraqueal/instrumentación , Intubación Intratraqueal/métodos , Broncoscopía/métodos , Broncoscopía/instrumentación , Rotación , Adulto , Resultado del Tratamiento , Tomografía Computarizada por Rayos X
2.
Zhongguo Yi Xue Ke Xue Yuan Xue Bao ; 46(1): 39-42, 2024 Feb.
Artículo en Zh | MEDLINE | ID: mdl-38433629

RESUMEN

Objective To compare the success rates of two methods for endobronchial intubation:the left-sided double-lumen tube(DLT) rotated 90° counter-clockwise with the patient head at the mid positon and the tube rotated 180° counter-clockwise with the patient head turned to the right. Methods Six hundred and forty-eight patients were enrolled in this study,who were to undergo elective thoracic surgery by left-sided DLT intubation in the Peking Union Medical College Hospital from December 2021 to June 2022.They were randomized into a 90° group and a 180° group,with 324 patients in each group.In the 90° group,with the patient head kept at the mid position,the left-sided DLT was advanced until the bronchial cuff passed the vocal cords and then rotated 90° counter-clockwise.In the 180°group,with the left mandible angle of each patient in the straight line with the sternum,the tube was advanced until the bronchial cuff passed the vocal cords and then rotated 180° counter-clockwise.The intubation success rate and the intubation-related complications such as carina mucosal injuries were compared between the two groups. Results The 648 patients included 336 males and 312 females,with the age ranging from 39.0 to 75.0 years old and the average age of(54.6±9.0) years old.The success rate of first intubation was 80.3% in the 90° group and 75.0% in the 180° group,which showed no significant difference(P=0.109).The success rate of second intubation was higher in the 180° group than in the 90° group(P<0.001).The rate of carina mucosal injuries was 23.8% in the 90° group and 25.6% in the 180° group,which showed no significant difference(P=0.585). Conclusions Compared with the conventional method(90°),the intubation of the left-sided DLT rotated 180° counter-clockwise with the patient head turned to the right cannot improve the success rate of the first intubation.However,it could improve the success rate of reintubation as a remedy.


Asunto(s)
Bronquios , Intubación Intratraqueal , Femenino , Masculino , Humanos , Persona de Mediana Edad , Adulto , Anciano , Procedimientos Quirúrgicos Electivos , Hospitales , Tráquea
3.
Graefes Arch Clin Exp Ophthalmol ; 261(12): 3589-3597, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37347246

RESUMEN

PURPOSE: To compare the patterns of retinal microvasculature change in the peripapillary and macular region between compressive optic neuropathy (CON) and glaucomatous optic neuropathy (GON), and to assess the ability of optical coherence tomography angiography (OCTA) in differentiating the two conditions. METHODS: This cross-sectional study included 108 participants (108 eyes), 36 with CON, 36 with GON, and 36 healthy controls. The CON and GON eyes were matched by the average peripapillary retinal nerve fiber layer (pRNFL) thickness (1:1). Optical coherence tomography (OCT) and OCTA were performed to compare the structural and vascular change of the peripapillary and macular region between groups. RESULTS: Both CON and GON eyes showed more severe structural and vascular damage than the control eyes. The CON eyes had lower pRNFL thickness than the GON eyes in the temporal and nasal quadrants, and thicker pRNFL thickness in the inferior quadrant. The average GCC thickness did not differ between the two groups. The peripapillary vessel density of the CON group was significantly higher in the inferior sectors than that of the GON group. In the macular region, the CON group had significantly higher vessel density in the whole image, the temporal sector in parafovea region, and the temporal, superior, and inferior sectors in perifovea region. CONCLUSION: To a similar degree of structural damage, CON had less retinal vascular impairment than GON, especially in the macular region, and the significance of the finding needs further evaluation.


Asunto(s)
Glaucoma , Disco Óptico , Enfermedades del Nervio Óptico , Humanos , Estudios Transversales , Células Ganglionares de la Retina , Enfermedades del Nervio Óptico/diagnóstico , Tomografía de Coherencia Óptica/métodos , Microvasos
4.
Sensors (Basel) ; 23(12)2023 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-37420925

RESUMEN

In a system where wind farms are connected to the grid via a bipolar flexible DC transmission, the occurrence of a short-time fault at one of the poles results in the active power emitted by the wind farm being transmitted through the non-faulty pole. This condition leads to an overcurrent in the DC system, thereby causing the wind turbine to disconnect from the grid. Addressing this issue, this paper presents a novel coordinated fault ride-through strategy for flexible DC transmission systems and wind farms, which eliminates the need for additional communication equipment. The proposed strategy leverages the power characteristics of the doubly fed induction generator (DFIG) under different terminal voltage conditions. By considering the safety constraints of both the wind turbine and the DC system, as well as optimizing the active power output during wind farm faults, the strategy establishes guidelines for the wind farm bus voltage and the crowbar switch signal. Moreover, it harnesses the power regulation capability of the DFIG rotor-side crowbar circuit to enable fault ride-through in the presence of single-pole short-time faults in the DC system. Simulation results demonstrate that the proposed coordinated control strategy effectively mitigates overcurrent in the non-faulty pole of flexible DC transmission during fault conditions.


Asunto(s)
Fuentes Generadoras de Energía , Modelos Teóricos , Suministros de Energía Eléctrica , Viento , Simulación por Computador
5.
Genomics ; 112(2): 1866-1871, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31678595

RESUMEN

Bacillus licheniformis TCCC11148 is an important industrial strain used to produce alkaline protease. In this study, the transcriptome of B. licheniformis TCCC11148 was analyzed by high throughput RNA sequencing (RNA-Seq) to identify genes that are expressed differentially in the different phases were detected using RNA-Seq. In total, 440 differentially expressed genes between the 12 h and 48 h groups were identified, including 267 up- and 173 downregulated genes. Additionally, 198 differentially expressed genes were identified in the 48 h vs. the 60 h group, including 182 up- and 16 downregulated genes. To screen for novel inducible promoters, an alkaline protease reporter gene was used to test 24 promoters from 66 candidate genes with obviously higher expression levels (RPKM values) than the control group based on the transcriptome data of B. licheniformis in different phases. Gene 707, related to coenzyme transport and metabolism, and gene 1004, related to posttranslational modification were identified as likely having inducible promoters. The expression level of recombinant strains with reporter genes under the control of promoters p707 and p1004 were 8 times higher than that of the control group. This study contributes a method for finding useful inducible promoters for industrial use based on transcriptomic data.


Asunto(s)
Bacillus licheniformis/genética , Regiones Promotoras Genéticas , Transcriptoma , Bacillus licheniformis/metabolismo , Regulación Bacteriana de la Expresión Génica , Operón , Activación Transcripcional
6.
Microb Cell Fact ; 19(1): 45, 2020 Feb 24.
Artículo en Inglés | MEDLINE | ID: mdl-32093734

RESUMEN

BACKGROUND: Bacillus licheniformis 2709 is extensively applied as a host for the high-level production of heterologous proteins, but Bacillus cells often possess unfavorable wild-type properties, such as production of viscous materials and foam during fermentation, which seriously influenced the application in industrial fermentation. How to develop it from a soil bacterium to a super-secreting cell factory harboring less undomesticated properties always plays vital role in industrial production. Besides, the optimal expression pattern of the inducible enzymes like alkaline protease has not been optimized by comparing the transcriptional efficiency of different plasmids and genomic integration sites in B. licheniformis. RESULT: Bacillus licheniformis 2709 was genetically modified by disrupting the native lchAC genes related to foaming and the eps cluster encoding the extracellular mucopolysaccharide via a markerless genome-editing method. We further optimized the expression of the alkaline protease gene (aprE) by screening the most efficient expression system among different modular plasmids and genomic loci. The results indicated that genomic expression of aprE was superior to plasmid expression and finally the transcriptional level of aprE greatly increased 1.67-fold through host optimization and chromosomal integration in the vicinity of the origin of replication, while the enzyme activity significantly improved 62.19% compared with the wild-type alkaline protease-producing strain B. licheniformis. CONCLUSION: We successfully engineered an AprE high-yielding strain free of undesirable properties and its fermentation traits could be applied to bulk-production by host genetic modification and expression optimization. In summary, host optimization is an enabling technology for improving enzyme production by eliminating the harmful traits of the host and optimizing expression patterns. We believe that these strategies can be applied to improve heterologous protein expression in other Bacillus species.


Asunto(s)
Bacillus licheniformis/metabolismo , Proteínas Bacterianas/biosíntesis , Endopeptidasas/biosíntesis , Bacillus licheniformis/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Fermentación , Ingeniería Genética , Microbiología Industrial , Proteínas de Transporte de Membrana/genética , Proteínas de Transporte de Membrana/metabolismo , Microorganismos Modificados Genéticamente/genética , Microorganismos Modificados Genéticamente/metabolismo , Plásmidos/genética
7.
BMC Ophthalmol ; 20(1): 15, 2020 Jan 08.
Artículo en Inglés | MEDLINE | ID: mdl-31914968

RESUMEN

BACKGROUND: The concentrations of cytokines in the aqueous humor from neovascular age-related macular degeneration (nAMD) and polypoidal choroidal vasculopathy (PCV) may vary. The study was conducted to compare various cytokine levels in the aqueous humor of eyes with PCV, nAMD and control. METHODS: The present case control study included 49 treatment-naïve eyes from 49 patients (PCV 24, nAMD 11, and cataract 14 eyes). Totally 34 angiogenic and inflammatory cytokines in the aqueous humor were measured by Luminex bead-based multiplex array. RESULTS: After adjusting for gender and age by multivariate logistic analysis, concentrations of IL-31, LIF, SDF1-α, VEGF-A, VEGF-D were significantly higher in eyes with nAMD or PCV compared with control eyes (all P < 0.05, times in nAMD: 59.5, 6.0, 7.0, 4.5, 5.6, respectively, times in PCV: 51.9, 5.21, 6.6, 4.0, 5.1, respectively), and concentrations of HGF, IP-10, MCP-1, IL-13 were significantly lower in eyes with nAMD or PCV than in control eyes (all P < 0.05, times in nAMD: 2.6, 2.0, 4.5, 4.7, respectively, times in PCV: 1.9, 3.0, 3.0, 2.8, respectively), but none of the 34 cytokines, including VEGF and IL-8, showed significantly different between eyes with nAMD and PCV. CONCLUSIONS: Various cytokines involved in inflammation and angiogenesis including elevated IL-31, LIF, SDF1-α, VEGF-A, VEGF-D might be involved in the pathogenesis of nAMD or PCV. None of the 34 cytokines may help to differentiate nAMD and PCV.


Asunto(s)
Humor Acuoso/metabolismo , Neovascularización Coroidal/metabolismo , Citocinas/metabolismo , Pólipos/metabolismo , Degeneración Macular Húmeda/metabolismo , Anciano , Anciano de 80 o más Años , Estudios de Casos y Controles , Neovascularización Coroidal/diagnóstico , Femenino , Angiografía con Fluoresceína , Humanos , Masculino , Persona de Mediana Edad , Reacción en Cadena de la Polimerasa Multiplex , Pólipos/diagnóstico , Degeneración Macular Húmeda/diagnóstico
8.
Inflammopharmacology ; 28(1): 165-174, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31352642

RESUMEN

Betulinic acid (BA), a pentacyclic triterpenoid, has been reported to inhibit cardiovascular dysfunction under sepsis-induced oxidative stress. Nuclear factor erythroid-2 related factor-2 (Nrf2) is regarded as a key transcription factor regulating expression of endogenous antioxidative genes. To explore the preventive effects of BA against vascular hyporeactivity and the related antioxidative mechanism in sepsis, contraction and relaxation in aortas isolated from lipopolysaccharide (LPS)-challenged rats were performed. Male Sprague-Dawley rats were pretreated with brusatol (Bru, 0.4 mg/kg/2 days, i.p.), an inhibitor of Nrf2, and BA (10, 25, 50 mg/kg/day, i.g.) for 3 days and injected with LPS (10 mg/kg, i.p.) at the 4th day. Rats were anesthetized and killed by cervical dislocation after they were treated with LPS for 4 h. Thoracic aortas were immediately dissected out to determine contraction and relaxation using the organ bath system. Pro-inflammatory factors interleukin-1ß (IL-1ß) and tumor necrosis factor-α (TNF-α) and oxidative stress were measured in aortic tissues and plasma. mRNA expression of Nrf2-regulated antioxidative enzymes, including superoxide dismutase (SOD), glutathione peroxidase (GPx), and heme oxygenase-1 (HO-1), in rat aortas was determined. Increases of IL-1ß, TNF-α, nitric oxide, and malondialdehyde and the decrease of glutathione induced by LPS were significantly attenuated by pretreatment with different doses of BA in plasma and aortas (p < 0.05 versus LPS), all of which were blocked by Bru (p < 0.01). Inhibition of phenylephrine (PE)- and KCl-induced contractions and acetylcholine (ACh)-induced vasodilatation in aortas from LPS-challenged rats was dose-dependently reduced by BA (p < 0.05; percentage improvements by BA in PE-induced contraction were 55.38%, 96.41%, and 104.33%; those in KCl-induced contraction were 15.11%, 23.96%, and 22.96%; and those in ACh-induced vasodilatation were 16.08%, 42.99%, and 47.97%), all of which were reversed by Bru (p < 0.01). Improvements of SOD, GPx, and HO-1 mRNA expression conferred by BA in LPS-challenged rat aortas were inhibited by Bru (p < 0.01; 145.45% versus 17.42%, 160.69% versus 22.76%, and 166.88% versus 23.57%). These findings suggest that BA attenuates impairments of aortic contraction and relaxation in LPS-challenged rats by activating Nrf2-regulated antioxidative pathways.


Asunto(s)
Antioxidantes/metabolismo , Aorta Torácica/efectos de los fármacos , Lipopolisacáridos/farmacología , Factor 2 Relacionado con NF-E2/metabolismo , Triterpenos/farmacología , Animales , Aorta Torácica/metabolismo , Glutatión/metabolismo , Interleucina-1beta/metabolismo , Masculino , Malondialdehído/metabolismo , FN-kappa B/metabolismo , Óxido Nítrico/metabolismo , Estrés Oxidativo/efectos de los fármacos , Triterpenos Pentacíclicos , Ratas , Ratas Sprague-Dawley , Superóxido Dismutasa/metabolismo , Factor de Necrosis Tumoral alfa/metabolismo , Ácido Betulínico
9.
Microb Cell Fact ; 18(1): 127, 2019 Jul 25.
Artículo en Inglés | MEDLINE | ID: mdl-31345221

RESUMEN

BACKGROUND: Our laboratory has constructed a Bacillus licheniformis strain that secretes alkaline protease (AprE) with excellent enzymatic properties. B. licheniformis is generally regarded as safe and has a high industrial exoenzyme secretion capacity, but the host retains some undomesticated characteristic that increase its competitiveness and survival, such as spore-formation, which increases the requirements and difficulties in industrial operations (e.g. sterilization and enzyme activity control). Furthermore, the influence of sporulation on alkaline protease production in B. licheniformis has not been elucidated in detail. RESULT: A series of asporogenic variants of the parent strain were constructed by individually knocking out the master regulator genes (spo0A, sigF and sigE) involved in sporulation. Most of the variants formed abortively disporic cells characterized by asymmetric septa at the poles and unable to survive incubation at 75 °C for 10 min. Two of them (ΔsigF and ΔsigE) exhibited superior characteristics in protease production, especially improving the expression of the aprE gene. Under the currently used fermentation conditions, the vegetative production phase of ΔsigF can be prolonged to 72 h, and the highest protease production of ΔsigF reached 29,494 ± 1053 U/mL, which was about 19.7% higher than that of the wild-type strain. CONCLUSION: We first constructed three key sporulation-deficient strain to investigate the effect of sporulation on alkaline protease synthesis. The sigF mutant retained important industrial properties such as facilitating the sterilization process, a prolonged stable phase of enzyme production and slower decreasing trend, which will be superior in energy conservation, simpler operations and target product controlling effect. In summary, the work provides a useful industrial host with preferable characteristics and a novel strategy to enhance the production of protease.


Asunto(s)
Bacillus licheniformis/enzimología , Bacillus licheniformis/genética , Proteínas Bacterianas/biosíntesis , Endopeptidasas/biosíntesis , Esporas Bacterianas/genética , Fermentación , Técnicas de Inactivación de Genes , Prueba de Complementación Genética , Eliminación de Secuencia
10.
Physiol Plant ; 167(4): 564-584, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30561011

RESUMEN

Abrupt drought-flood alternation (T1) is a meteorological disaster that frequently occurs during summer in southern China and the Yangtze river basin, often causing a significant loss of rice production. In this study, the response mechanism of yield decline under abrupt drought-flood alternation stress at the panicle differentiation stage was analyzed by looking at the metabolome, proteome as well as yield and physiological and biochemical indexes. The results showed that drought and flood stress caused a decrease in the yield of rice at the panicle differentiation stage, and abrupt drought-flood alternation stress created a synergistic effect for the reduction of yield. The main reason for the decrease of yield per plant under abrupt drought-flood alternation was the decrease of seed setting rate. Compared with CK0 (no drought and no flood), the net photosynthetic rate and soluble sugar content of T1 decreased significantly and its hydrogen peroxidase, superoxide dismutase, peroxidase activity increased significantly. The identified differential metabolites and differentially expressed proteins indicated that photosynthesis metabolism, energy metabolism pathway and reactive oxygen species response have changed strongly under abrupt drought-flood alteration stress, which are factors that leads to the rice grain yield reduction.


Asunto(s)
Sequías , Inundaciones , Oryza/fisiología , Estrés Fisiológico , China , Metabolismo Energético , Metaboloma , Fotosíntesis , Proteoma , Especies Reactivas de Oxígeno
11.
Ann Hum Biol ; 46(3): 272-278, 2019 May.
Artículo en Inglés | MEDLINE | ID: mdl-31208213

RESUMEN

Aim: Genetic polymorphisms and the mutation ratio of 19 autosomal short tandem repeat (STR) loci were analysed in 10,000 individuals and 7755 families from Jiangsu Province in Eastern China.Subjects and methods: Nineteen STR loci were amplified by a multiplex amplification system and genotyped on the ABI 3130 Genetic Analyser. Allele frequencies, forensic parameters and mutations for the 19 autosomal STR loci were statistically analysed.Results: In total, 344 genotypes were discovered. No significant deviation from Hardy-Weinberg equilibrium was observed. The combined power of discrimination reached 0.9999999999999999984341, and the combined probability of paternity exclusion was 0.999999989. The pairwise genetic distance and p-values between the Jiangsu and 17 published populations depended on the FST value calculation and are shown by the neighbour-joining evolutionary tree. No statistically significant differences were found, except for the Xinjiang Altay Han (p = 0.01802) population. The average mutation rate of the Jiangsu population across all 19 loci was 1.4 × 10-3. The average mutation rate of the 13 core CODIS STR loci remained below 2 × 10-3 and there was no difference and relatively high consistency (p < 0.001) by correlation coefficient analysis among the six groups.Conclusions: Allelic genetic polymorphisms and mutation data were obtained from a large number of samples, which indicated that the amplification kit is suitable for forensic application and that the Jiangsu population has its own genetic characteristics that are different from those of other ethnic populations.


Asunto(s)
Repeticiones de Microsatélite/genética , Tasa de Mutación , Polimorfismo Genético , Adulto , China , Etnicidad/genética , Humanos , Persona de Mediana Edad , Adulto Joven
12.
Zhonghua Yan Ke Za Zhi ; 50(3): 225-9, 2014 Mar.
Artículo en Zh | MEDLINE | ID: mdl-24841819

RESUMEN

It is now well recognized that vitreomacular adhesion (VMA) plays an important role in the pathogenesis of various retinopathy. Traction released through pars plana vitrectomy was used before, but it is limited by some problems such as incomplete vitreoretinal separation, vitreous remnant and other operative complications. While another new method-Pharmacologic Vitreolysis provided us a new method for persistent pathologic VMA treatment. This review aims to introduce the vitreous molecular structure, principles of posterior vitreous detachment and progression of pharmacologic vitreolysis method study.


Asunto(s)
Fibrinolisina/uso terapéutico , Enfermedades de la Retina/terapia , Cuerpo Vítreo/efectos de los fármacos , Fibrinolisina/administración & dosificación , Humanos , Inyecciones Intravítreas
13.
Sci Rep ; 14(1): 7351, 2024 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-38548814

RESUMEN

During the manufacturing process of printed circuit boards (PCBs), quality defects can occur, which can affect the performance and reliability of PCBs. Existing deep learning-based PCB defect detection methods are difficult to simultaneously achieve the goals of high detection accuracy, fast detection speed, and small number of parameters. Therefore, this paper proposes a PCB defect detection algorithm based on CDI-YOLO. Firstly, the coordinate attention mechanism (CA) is introduced to improve the backbone and neck network of YOLOv7-tiny, enhance the feature extraction capability of the model, and thus improve the accuracy of model detection. Secondly, DSConv is used to replace part of the common convolution in YOLOv7-tiny to achieve lower computing costs and faster detection speed. Finally, Inner-CIoU is used as the bounding box regression loss function of CDI-YOLO to speed up the bounding box regression process. The experimental results show that the method achieves 98.3% mAP on the PCB defect dataset, the detection speed is 128 frames per second (FPS), the parameters is 5.8 M, and the giga floating-point operations per second (GFLOPs) is 12.6 G. Compared with the existing methods, the comprehensive performance of this method has advantages.

14.
Mol Neurobiol ; 2024 Mar 08.
Artículo en Inglés | MEDLINE | ID: mdl-38453794

RESUMEN

Major depressive disorder (MDD) is a prevalent psychiatric condition often accompanied by severe impairments in cognitive and functional capacities. This research was conducted to identify RNA modification-related gene signatures and associated functional pathways in MDD. Differentially expressed RNA modification-related genes in MDD were first identified. And a random forest model was developed and distinct RNA modification patterns were discerned based on signature genes. Then, comprehensive analyses of RNA modification-associated genes in MDD were performed, including functional analyses and immune cell infiltration. The study identified 29 differentially expressed RNA modification-related genes in MDD and two distinct RNA modification patterns. TRMT112, MBD3, NUDT21, and IGF2BP1 of the risk signature were detected. Functional analyses confirmed the involvement of RNA modification in pathways like phosphatidylinositol 3-kinase signaling and nucleotide oligomerization domain (NOD)-like receptor signaling in MDD. NUDT21 displayed a strong positive correlation with type 2 T helper cells, while IGF2BP1 negatively correlated with activated CD8 T cells, central memory CD4 T cells, and natural killer T cells. In summary, further research into the roles of NUDT21 and IGF2BP1 would be valuable for understanding MDD prognosis. The identified RNA modification-related gene signatures and pathways provide insights into MDD molecular etiology and potential diagnostic biomarkers.

15.
J Hepatocell Carcinoma ; 11: 747-766, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38680213

RESUMEN

Purpose: Nonsense-mediated RNA decay (NMD), a surveillance pathway for selective degradation of aberrant mRNAs, is associated with cancer progression. Its potential as a predictor for aggressive hepatocellular carcinoma (HCC) is unclear. Here, we present an innovative NMD risk model for predicting HCC prognosis. Methods: The Cancer Genome Atlas (TCGA) data of 374 liver HCC (LIHC) and 50 normal liver samples were extracted. A risk model based on NMD-related genes was developed through least absolute shrinkage and selection operator Cox (LASSO-Cox) regression of the LIHC-TCGA data. Prognostic validation was done using GSE54236, GSE116174, and GSE76427 data. Univariate and multivariate Cox regression analyses were conducted to assess the prognostic value of the model. We also constructed nomograms for survival prediction. Tumor immune infiltration was evaluated using the CIBERSORT algorithm, and the tumor cell phenotype was assessed. Finally, mouse experiments verified UPF3B knockdown effects on HCC tumor characteristics. Results: We developed a risk model based on four NMD-related genes (PABPC1, RPL8, SMG5, and UPF3B) and validated it using GSE54236, GSE116174, and GSE76427 data. The model effectively distinguished high- and low-risk groups corresponding to unfavorable and favorable HCC outcomes. Its prognostic prediction accuracy was confirmed through time-dependent ROC analysis, and clinical-use nomograms with calibration curves were developed. Single-cell RNA sequencing results indicated significantly higher expression of SMG5 and UPF3B in tumor cells. Knockdown of SMG5 and UPF3B inhibited HCC cell proliferation, invasion, and migration, while affecting cell-cycle progression and apoptosis. In vivo, UPF3B knockdown delayed tumor growth and increased immune cell infiltration. Conclusion: Our NMD-related gene-based risk model can help identify therapeutic targets and biomarkers for HCC. Additionally, it assists clinicians in predicting the prognosis of HCC patients.

16.
PeerJ Comput Sci ; 9: e1372, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37346643

RESUMEN

Drawing the clothing plan is an essential part of the clothing industry. However, the irregular shape of clothing, strong deformability and sensitivity to light make the fast and accurate realization of clothing image retrieval a very challenging problem. The successful application of the Transformer in image recognition shows the application potential of the Transformer in the image field. This article proposes an efficient and improved clothing plan based on ResNet-50. Firstly, in the feature extraction section, the ResNet-50 network structure embedded in the Transformer module is used to improve the network's receptive field range and feature extraction ability. Secondly, dense jump connections are added to the ResNet-50 upsampling process, making full use of feature extraction information at each stage, further improving the quality of the generated image. The network consists of three steps: the sketch stage, which aims to predict the color distribution of clothing and obtain watercolor images without gradients and shadows. The second is the thinning stage, which refines the watercolor image into a clothing image with light and shadow effect; The third is the optimization stage, which combines the outputs of the first two stages to optimize the generation quality further. The experimental results show that the improved network's IS and first input delay (FID) scores are 4.592 and 1.506, respectively. High-quality clothing images can be generated only by inputting line drawings and a few color points. Compared with the existing methods, the image generated by this network has excellent advantages in realism and accuracy. This method can combine various feature information of images, improve retrieval accuracy, has strong robustness and practicability, and can provide a reference for the daily work of fashion designers.

17.
Math Biosci Eng ; 20(8): 14201-14221, 2023 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-37679132

RESUMEN

Feature selection has always been an important topic in machine learning and data mining. In multi-label learning tasks, each sample in the dataset is associated with multiple labels, and labels are usually related to each other. At the same time, multi-label learning has the problem of "curse of dimensionality". Feature selection therefore becomes a difficult task. To solve this problem, this paper proposes a multi-label feature selection method based on the Hilbert-Schmidt independence criterion (HSIC) and sparrow search algorithm (SSA). It uses SSA for feature search and HSIC as feature selection criterion to describe the dependence between features and all labels, so as to select the optimal feature subset. Experimental results demonstrate the effectiveness of the proposed method.

18.
Ophthalmol Ther ; 12(2): 827-837, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36539596

RESUMEN

INTRODUCTION: Anti-vascular endothelial growth factor (anti-VEGF) injection was widely used in patients with neovascular age-related macular degeneration (nAMD) and polypoidal choroidal vasculopathy (PCV); however, the systemic and local levels of vascular endothelial growth factor (VEGF)-B were seldom detected before. This study was conducted to detect and compare the aqueous humor and plasma VEGF-B levels in nAMD and PCV before and after anti-VEGF therapy. METHODS: Concentrations of VEGF-B in aqueous humor and plasma of individuals with nAMD (n = 10), PCV (n = 22), and age-related cataract controls (n = 12) were measured by enzyme-linked immunosorbent assay. Ranibizumab was injected intravitreally in patients monthly for three consecutive months. Before each injection in patients and at the baseline of controls, blood and aqueous humor samples were collected. Best-corrected visual acuity (BCVA) and central retinal thickness (CRT) were collected before each injection in patient groups. The differences of BCVA, CRT, and VEGF-B levels in aqueous humor and plasma between groups before and after anti-VEGF therapy were compared. RESULTS: VEGF-B was overexpressed in aqueous humor and plasma of nAMD and PCV groups compared with control group (P < 0.05), but no statistically significant difference existed across nAMD and PCV groups (P > 0.05). Moreover, there were no obvious difference in levels of VEGF-B in aqueous humor and plasma within the treatment groups after anti-VEGF treatment (P > 0.05). The mean CRT in the nAMD group was thinner than that in the PCV group at baseline (P < 0.01). After injections, the CRT obviously declined in both groups (P < 0.05). There was no correlation between CRT reduction and high VEGF-B expression in aqueous humor and plasma of treatment groups. CONCLUSION: Overexpression of VEGF-B locally and systemically in patients with nAMD and PCV indicated that elevated VEGF-B concentrations were relevant to the disease processes. Ranibizumab did not influence the levels of VEGF-B in the real world. CRT might help to distinguish PCV from nAMD.

19.
Sci Rep ; 13(1): 2428, 2023 02 10.
Artículo en Inglés | MEDLINE | ID: mdl-36765260

RESUMEN

Seed aging is the key factor leading to the loss of genetic integrity. In this study, the seeds of Dongxiang wild rice, Xianggu, 9194 and Nipponbare were kept in a plant incubator with constant temperature and humidity for artificial aging treatment. The genetic integrity of germplasm resources with different germination gradients were analyzed using 44 SSR markers. The results suggested that different accessions could be ranked in order of aging resistance from highest to lowest as common wild rice > Xianggu > 9194 > Nipponbare. In order to maintain the genetic diversity of rice, the population size for reproduction and regeneration should be between 60 and 140. After aging, the number of polymorphic alleles, the number of specific single plant, the ratio of polymorphic bands, the number of alleles, the number of effective alleles, gene diversity index and Shannon index of different accessions all decreased with the decrease of germination rate. The germination rate of 60% was the critical value to maintain genetic integrity. Besides, the genetic integrity of eighteen SSR markers was rapidly lost or significantly increased. The regions of these markers were closely related to seed viability or genetic integrity. This study provides a theoretical basis for determining the population size for reproduction and regeneration and the critical value of germination rate of rice resources.


Asunto(s)
Oryza , Oryza/genética , Semillas/genética , Variación Genética , Alelos , Repeticiones de Microsatélite/genética
20.
Nanoscale ; 16(1): 335-342, 2023 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-38059873

RESUMEN

The electronic interaction between a metal and a support modulates the electronic structures of supported metals and plays an important role in manipulating their catalytic performance. However, this interaction is mainly realized in heterogeneous catalysts composed of reducible oxides. Herein, we demonstrate the electronic interaction between γ-Al2O3 and η-Al2O3 with varying acid-base properties and supported Pd nanoparticles (NPs) of 2 nm in size. The strength and number of acid-base sites on the supports and catalysts were systemically characterized by FT-IR spectroscopy and TPD. The supported Pd NPs exhibit electron-rich surface properties by receiving electrons from the electron-donating basic sites on γ-Al2O3, which are beneficial for catalyzing the hydrogenation of nitrobenzene. In contrast, Pd NPs loaded on η-Al2O3 are electron-deficient because of the rich electron-withdrawing acid sites of η-Al2O3. As a result, Pd/η-Al2O3 exhibits higher catalytic activity in phenylacetylene hydrogenation than Pd/γ-Al2O3. Our results suggest a promising route for designing high-performance catalysts by adjusting the acid-base properties of Al2O3 supports to maneuver the electronic structures of metals.

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