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1.
New Phytol ; 194(3): 784-799, 2012 May.
Artículo en Inglés | MEDLINE | ID: mdl-22413848

RESUMEN

• The aim of this study was to gain understanding of the carbon flow from the roots of a genetically modified (GM) amylopectin-accumulating potato (Solanum tuberosum) cultivar and its parental isoline to the soil fungal community using stable isotope probing (SIP). • The microbes receiving (13)C from the plant were assessed through RNA/phospholipid fatty acid analysis with stable isotope probing (PLFA-SIP) at three time-points (1, 5 and 12 d after the start of labeling). The communities of Ascomycota, Basidiomycota and Glomeromycota were analysed separately with RT-qPCR and terminal restriction fragment length polymorphism (T-RFLP). • Ascomycetes and glomeromycetes received carbon from the plant as early as 1 and 5 d after labeling, while basidiomycetes were slower in accumulating the labeled carbon. The rate of carbon allocation in the GM variety differed from that in its parental variety, thereby affecting soil fungal communities. • We conclude that both saprotrophic and mycorrhizal fungi rapidly metabolize organic substrates flowing from the root into the rhizosphere, that there are large differences in utilization of root-derived compounds at a lower phylogenetic level within investigated fungal phyla, and that active communities in the rhizosphere differ between the GM plant and its parental cultivar through effects of differential carbon flow from the plant.


Asunto(s)
Ascomicetos/metabolismo , Basidiomycota/metabolismo , Carbono/metabolismo , Glomeromycota/metabolismo , Micorrizas/metabolismo , Solanum tuberosum/microbiología , Amilopectina/metabolismo , Ascomicetos/genética , Basidiomycota/genética , Isótopos de Carbono/análisis , Glomeromycota/genética , Micorrizas/genética , Fosfolípidos/análisis , Fosfolípidos/metabolismo , Filogenia , Exudados de Plantas , Raíces de Plantas/metabolismo , Raíces de Plantas/microbiología , Plantas Modificadas Genéticamente , Polimorfismo de Longitud del Fragmento de Restricción , Rizosfera , Suelo , Microbiología del Suelo , Solanum tuberosum/genética , Solanum tuberosum/metabolismo
2.
Microbiol Mol Biol Rev ; 61(2): 121-35, 1997 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-9184007

RESUMEN

Introduced microorganisms are potentially powerful agents for manipulation of processes and/or components in soil. Fields of application include enhancement of crop growth, protection of crops against plant-pathogenic organisms, stimulation of biodegradation of xenobiotic compounds (bioaugmentation), and improvement of soil structure. Inoculation of soils has already been applied for decades, but it has often yielded inconsistent or disappointing results. This is caused mainly by a commonly observed rapid decline in inoculant population activity following introduction into soil, i.e., a decline of the numbers of inoculant cells and/or a decline of the (average) activity per cell. In this review, we discuss the available information on the effects of key factors that determine the fate and activity of microorganisms introduced into soil, with emphasis on bacteria. The factors addressed include the physiological status of the inoculant cells, the biotic and abiotic interactions in soil, soil properties, and substrate availability. Finally, we address the possibilities available to effectively manipulate the fate and activity of introduced microorganisms in relation to the main areas of their application.


Asunto(s)
Fenómenos Fisiológicos Bacterianos , Microbiología del Suelo , Biodegradación Ambiental , Recuento de Colonia Microbiana , Ecología , Raíces de Plantas/microbiología
3.
Microbiome ; 6(1): 142, 2018 08 13.
Artículo en Inglés | MEDLINE | ID: mdl-30103819

RESUMEN

BACKGROUND: Vinasse, a by-product of sugarcane ethanol production, is recycled by sugarcane plantations as a fertilizer due to its rich nutrient content. However, the impacts of the chemical and microbial composition of vinasse on soil microbiome dynamics are unknown. Here, we evaluate the recovery of the native soil microbiome after multiple disturbances caused by the application of organic vinasse residue, inorganic nitrogen, or a combination of both during the sugarcane crop-growing season (389 days). Additionally, we evaluated the resistance of the resident soil microbial community to the vinasse microbiome. RESULTS: Vinasse applied alone or 30 days prior to N resulted in similar changes in the soil microbial community. Furthermore, the impact of the application of vinasse together with N fertilizer on the soil microbial community differed from that of N fertilizer alone. Organic vinasse is a source of microbes, nutrients, and organic matter, and the combination of these factors drove the changes in the resident soil microbial community. However, these changes were restricted to a short period of time due to the capacity of the soil community to recover. The invasive bacteria present in the vinasse microbiome were unable to survive in the soil conditions and disappeared after 31 days, with the exception of the Acetobacteraceae (native in the soil) and Lactobacillaceae families. CONCLUSION: Our analysis showed that the resident soil microbial community was not resistant to vinasse and inorganic N application but was highly resilient.


Asunto(s)
Bacterias/crecimiento & desarrollo , Saccharum/crecimiento & desarrollo , Residuos Sólidos/efectos adversos , Bacterias/clasificación , Bacterias/efectos de los fármacos , Bacterias/aislamiento & purificación , ADN Bacteriano/genética , ADN Ribosómico/genética , Metagenómica , Nitrógeno/efectos adversos , ARN Ribosómico 16S/genética , Reciclaje/métodos , Saccharum/química , Microbiología del Suelo
4.
Annu Rev Phytopathol ; 42: 243-70, 2004.
Artículo en Inglés | MEDLINE | ID: mdl-15283667

RESUMEN

An increasing interest has emerged with respect to the importance of microbial diversity in soil habitats. The extent of the diversity of microorganisms in soil is seen to be critical to the maintenance of soil health and quality, as a wide range of microorganisms is involved in important soil functions. This review focuses on recent data relating how plant type, soil type, and soil management regime affect the microbial diversity of soil and the implication for the soil's disease suppressiveness. The two main drivers of soil microbial community structure, i.e., plant type and soil type, are thought to exert their function in a complex manner. We propose that the fact that in some situations the soil and in others the plant type is the key factor determining soil microbial diversity is related to the complexity of the microbial interactions in soil, including interactions between microorganisms and soil and microorganisms and plants. A conceptual framework, based on the relative strengths of the shaping forces exerted by plant and soil versus the ecological behavior of microorganisms, is proposed.


Asunto(s)
Ecosistema , Plantas/microbiología , Suelo/análisis , Agricultura , Animales , Bacterias/aislamiento & purificación , Hongos/aislamiento & purificación , Enfermedades de las Plantas/microbiología , Microbiología del Suelo
5.
Environ Microbiol Rep ; 7(5): 709-14, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25858310

RESUMEN

Mycophagous (=fungus feeding) soil bacteria of the genus Collimonas have been shown to colonize and grow on hyphae of different fungal hosts as the only source of energy and carbon. The ability to exploit fungal nutrient resources might require a strategy for collimonads to sense fungi in the soil matrix. Oxalic acid is ubiquitously secreted by soil fungi, serving different purposes. In this study, we investigated the possibility that collimonads might use oxalic acid secretion to localize a fungal host and move towards it. We first confirmed earlier indications that collimonads have a very limited ability to use oxalic acid as growth substrate. In a second step, with using different assays, we show that oxalic acid triggers bacterial movement in such a way that accumulation of cells can be expected at micro-sites with high free oxalic acid concentrations. Based on these observations we propose that oxalic acid functions as a signal molecule to guide collimonads to hyphal tips, the mycelial zones that are most sensitive for mycophagous bacterial attack.


Asunto(s)
Hongos/metabolismo , Interacciones Microbianas , Ácido Oxálico/metabolismo , Oxalobacteraceae/efectos de los fármacos , Oxalobacteraceae/crecimiento & desarrollo , Oxalobacteraceae/metabolismo , Carbono/metabolismo , Metabolismo Energético , Locomoción , Oxalobacteraceae/fisiología , Transducción de Señal
6.
New Phytol ; 129(1): 45-53, 1995 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33874420

RESUMEN

Effects of short-term ozone exposure of mature trees were compared with those of seedlings. Both 25-yr-old Douglas firs [Pseudotsuga menziesii (Mirb.) Franco] and 3-yr-old Douglas fir seedlings were exposed to 0, 200 and 400 µgm-1 ozone for about 1.5 wk and then labelled with 14 CO2 to study the effect on net photosynthesis, translocation and partitioning of assimilates. In the seedling experiment, two identical growth cabinets with separated shoot and root compartments were used for ozone fumigation and 14 C-labelling. Seedlings were harvested and H C contents in the needles (subdivided into starch, ethanol-soluble and residue fractions), branches, roots, root/soil respiration and soil residue were determined, together with the total starch content of the needles. Ozone increased the retention of 14 C-photosynthates in the needles. Translocation of carbon to the branches and roots seemed to be inhibited by the highest ozone treatment. The increased 14 C-retention was mainly recovered in the residue fraction of the needles. Total starch content of the needles decreased in the highest ozone treatment. In the experiment with mature trees, terminal shoots were fumigated with ozone and labelled with 14 C using three small branch chambers. Carbon distribution was studied after harvest of the branches. Total 14 C contents in the needle fractions and the branches were determined, together with the total starch content of the needles. Ozone was found to inhibit net 14 CO2 assimilation as well as translocation of 14 C-labelled assimilates from exposed needles to the branch. No effects of ozone were found on the partitioning of 14 C among the starch, ethanol-soluble, and residue fractions of the needles, although amounts in the ethanol-soluble fraction tended to increase after exposure to ozone. The results indicate that mature and juvenile Douglas firs respond in a similar way to short-term ozone exposure with regard to carbon translocation. If this similarity also applies to other species, then results from phytotron experiments on ozone and translocation of carbon might gain importance with respect to extrapolation to forest ecosystems.

7.
Ecol Appl ; 1(2): 175-181, 1991 May.
Artículo en Inglés | MEDLINE | ID: mdl-27755661

RESUMEN

The flow of carbon from photosynthesizing tissues of higher plants, through the roots and into the soil is one of the key processes in terrestrial ecosystems. An increased level of CO2 in the atmosphere will likely result in an increased input of organic carbon into the soil due to the expected increase in primary production. Whether this will lead to accumulation of greater amounts of organic carbon in soil depends on the flow of carbon through the plant into the soil and its subsequent transformation in the soil by microorganisms. In this paper the major controls of carbon translocation via roots into the soil as well as the subsequent microbial turnover of root-derived carbon are reviewed. We discuss possible consequences of an increased CO2 level in the atmosphere on these processes.

8.
Environ Microbiol Rep ; 4(4): 424-32, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23760828

RESUMEN

Collimonas is a genus of soil bacteria comprising three recognized species: C. fungivorans, C. pratensis and C. arenae. Collimonads share the ability to degrade chitin (chitinolysis), feed on living fungal hyphae (mycophagy), and dissolve minerals (weathering), but vary in their inhibition of fungi (fungistasis). To better understand this phenotypic variability, we analysed the genomic content of four strains representing three Collimonas species (Ter14, Ter6, Ter91 and Ter10) by hybridization to a microarray based on reference strain C. fungivorans Ter331. The analysis revealed genes unique to strain Ter331 (e.g. those on the extrachromosomal element pTer331) and genes present in some but not all of the tested strains. Among the latter were several candidates that may contribute to fungistasis, including genes for the production and secretion of antifungals. We hypothesize that differential possession of these genes underlies the specialization of Collimonas strains towards different fungal hosts. We identified a set of 136 genes that were common in all tested Collimonas strains, but absent from the genomes of three other members of the family Oxalobacteraceae. Predicted products of these 'Collimonas core' genes include lytic, secreted enzymes such as chitinases, peptidases, nucleases and phosphatases with a putative role in mycophagy and weathering.

9.
Chem Commun (Camb) ; 46(20): 3466-8, 2010 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-20407684

RESUMEN

The most acidic OH groups in silica-aluminas (zeolites, clays, amorphous silica-aluminas) can be made to react selectively with C(6)D(6) to give acidic OD groups; quantification by IR spectroscopy shows that differences in the overall Brønsted acidity of aluminosilicates are dominated by differences in the density of sites of similar acid strength.


Asunto(s)
Ácidos/química , Silicatos de Aluminio/química , Propiedades de Superficie
10.
Int J Syst Evol Microbiol ; 58(Pt 2): 414-9, 2008 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-18218941

RESUMEN

A polyphasic taxonomic study was performed to compare 26 novel bacterial isolates obtained from (semi-)natural grassland soils and a heathland soil in the Netherlands with 16 strains that had previously been assigned to the genus Collimonas. Genomic fingerprinting (BOX-PCR), whole-cell protein electrophoresis, matrix-assisted laser desorption ionization time-of-flight mass spectrometry of intact cells and physiological characterization (Biolog) of the isolates confirmed the existence of different strain clusters (A-D) within the genus Collimonas. Until now, only cluster C strains have been formally classified, as Collimonas fungivorans. In this study, DNA-DNA hybridizations were performed with a selection of strains representing the four clusters. The results showed that cluster B strains also belong to C. fungivorans and that strains of clusters A and D represent two novel species within the genus Collimonas. The latter novel species could be differentiated by means of phenotypic and genotypic characteristics and are classified as Collimonas arenae sp. nov. (cluster A; type strain Ter10(T) =LMG 23964(T) =CCUG 54727(T)) and Collimonas pratensis sp. nov. (cluster D; type strain Ter91(T) =LMG 23965(T) =CCUG 54728(T)).


Asunto(s)
Oxalobacteraceae/clasificación , Poaceae/crecimiento & desarrollo , Microbiología del Suelo , Técnicas de Tipificación Bacteriana , Dermatoglifia del ADN/métodos , ADN Bacteriano/análisis , Genes de ARNr , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , Oxalobacteraceae/genética , Oxalobacteraceae/aislamiento & purificación , Oxalobacteraceae/fisiología , Reacción en Cadena de la Polimerasa/métodos , Polimorfismo de Longitud del Fragmento de Restricción , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Especificidad de la Especie , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
11.
Microb Ecol ; 52(2): 267-79, 2006 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16897309

RESUMEN

The main objective of this study was to determine the Burkholderia community structure associated with areas under different agricultural management and to evaluate to which extent this community structure is affected by changes in agricultural management. Two fields with distinct soil history (arable land and permanent grassland) were exposed to three agricultural management regimes (crop rotation, maize monoculture, and grassland). By using a culture-independent approach, based on a Burkholderia-specific polymerase chain reaction-denaturing gradient gel electrophoresis system, it was possible to observe the conversion of Burkholderia communities typical for permanent grassland to those of arable land after four consecutive years. However, the time needed to achieve the reverse transition, i.e., converting the Burkholderia community associated with arable land to that of grassland, was beyond the duration of the field experiment. In addition, by applying principal response curves, the direction and extent of the conversion from grassland to arable land (maize monoculture and to crop rotation) were determined. Hence, the results suggested that agricultural practices, such as fertilization and tillage, were more effective in changing the Burkholderia community structure than agricultural management regime. To determine the effect of agricultural management on the Burkholderia population with biocontrol abilities, the culturable fraction of the Burkholderia community was assessed. The areas under permanent grassland and grassland converted to maize monoculture had the highest percentages of Burkholderia strains with antagonistic activity against Rhizoctonia solani AG-3, mainly Burkholderia pyrrocinia and Burkholderia sp. LMG 22929. The isolation frequency of antagonistic isolates from arable land was extremely low. Our results indicate that (changes in) agricultural management, mainly crop rotation, affect the frequency of isolation of antagonistic Burkholderia strains and that grassland represents a reservoir of Burkholderia species with great potential for agricultural applications.


Asunto(s)
Agricultura , Burkholderia/fisiología , Microbiología del Suelo , Basidiomycota , Biodiversidad , Burkholderia/clasificación , Burkholderia/genética , Electroforesis en Gel de Agar , Control Biológico de Vectores , Reacción en Cadena de la Polimerasa , Zea mays/crecimiento & desarrollo
12.
Environ Microbiol ; 8(2): 233-46, 2006 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-16423012

RESUMEN

The extent of soil microbial diversity is seen to be critical to the maintenance of soil health and quality. Different agricultural practices are able to affect soil microbial diversity and thus the level of suppressiveness of plant diseases. In a 4-year field experiment, we investigated the microbial diversity of soil under different agricultural regimes. We studied permanent grassland, grassland turned into arable land, long-term arable land and arable land turned into grassland. The diversity of microbial communities was described by using cultivation-based and cultivation-independent methods. Both types of methods revealed differences in the diversities of soil microbial communities between different treatments. The treatments with higher above-ground biodiversity generally maintained higher levels of microbial diversity. Moreover, a positive correlation between suppression of Rhizoctonia solani AG3 and microbial diversity was observed. Permanent (species-rich) grassland and grassland turned into maize stimulated higher microbial diversities and higher levels of suppressiveness of R. solani AG3 compared with the long-term arable land. Effects of agricultural practices on Bacillus and Pseudomonas communities were also observed and clear correlations between the levels of suppressiveness and the diversities of these bacterial groups were found. This study highlighted the importance of agricultural management regime for soil microbial community structure and diversity as well as the level of soil suppressiveness.


Asunto(s)
Agricultura , Poaceae/crecimiento & desarrollo , Rhizoctonia/crecimiento & desarrollo , Microbiología del Suelo , Agricultura/métodos , ADN Bacteriano/análisis , ADN de Hongos/análisis , Reacción en Cadena de la Polimerasa , Microbiología del Suelo/normas , Zea mays/crecimiento & desarrollo
13.
Plant Physiol ; 88(3): 559-63, 1988 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16666348

RESUMEN

Douglas firs (Pseudotsuga menziesii [Mirb.] Franco) are suffering strongly from air pollution in western Europe. We studied the effect of low concentrations of ozone (200 micrograms per cubic meter during 3 days) and sulfur dioxide (53 micrograms per cubic meter during 28 days) on translocation of assimilates in 2 year old Douglas firs. The trees were exposed to the pollutants and afterward transferred to a growth chamber adapted to the use of (14)CO(2). Root/soil respiration was measured daily. The results showed a significant decrease of the (14)CO(2) root/soil respiration during the first 1 to 2 weeks after exposure to either ozone or sulfur dioxide. The ultimate level of (14)CO(2) root/soil respiration did not differ significantly, which suggests a recovery of the exposed trees during the first weeks after exposure.

14.
Microb Ecol ; 19(2): 149-61, 1990 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24196308

RESUMEN

The hypothesis that the population size of introduced bacteria is affected by habitable pore space was studied by varying moisture content and bulk density in sterilized, as well as in natural loamy sand and silt loam. The soils were inoculated withRhizobium leguminosarum biovartrifolii and established and maintained at soil water potentials between -5 and -20 kPa (pF 1.7 and 2.3). Rhizobial cells were enumerated when population sizes were expected to be more or less stable. In sterilized soils, the rhizobial numbers were not affected or decreased only slightly when water potentials increased from -20 to -5 kPa. In natural soils, the decrease in rhizobial numbers with increasing water potentials was more pronounced. Bulk density had only minor effects on the population sizes of rhizobia or total bacteria. Soil water retention curves of both soils were used to calculate volume and surface area of pores from different diameter classes, and an estimation of the habitable pore space was made. Combining these values of the theoretical habitable pore space with the measured rhizobial numbers showed that only 0.37 and 0.44% of the habitable pore space was occupied in the sterilized loamy sand and silt loam, respectively. The situation in natural soil is more complicated, since a whole variety of microorganisms is present. Nevertheless, it was suggested that, in general, pore space does not limit proliferation and growth of soil microorganisms.

15.
Appl Environ Microbiol ; 57(10): 3006-12, 1991 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-16348569

RESUMEN

Spontaneous ethylenediamine-resistant mutants of Azospirillum brasilense were selected on the basis of their excretion of NH(4). Two mutants exhibited no repression of their nitrogenase enzyme systems in the presence of high (20 mM) concentrations of NH(4). The nitrogenase activities of these mutants on nitrogen-free minimal medium were two to three times higher than the nitrogenase activity of the wild type. The mutants excreted substantial amounts of ammonia when they were grown either under oxygen-limiting conditions (1 kPa of O(2)) or aerobically on nitrate or glutamate. The mutants grew well on glutamate as a sole nitrogen source but only poorly on NH(4)Cl. Both mutants failed to incorporate [C]methylamine. We demonstrated that nitrite ammonification occurs in the mutants. Wild-type A. brasilense, as well as the mutants, became established in the rhizospheres of axenically grown wheat plants at levels of > 10 cells per g of root. The rhizosphere acetylene reduction activity was highest in the preparations containing the mutants. When plants were grown on a nitrogen-free nutritional medium, both mutants were responsible for significant increases in root and shoot dry matter compared with wild-type-treated plants or with noninoculated controls. Total plant nitrogen accumulation increased as well. When they were exposed to a N(2)-enriched atmosphere, both A. brasilense mutants incorporated significantly higher amounts of N inside root and shoot material than the wild type did. The results of our nitrogen balance and N enrichment studies indicated that NH(4)-excreting A. brasilense strains potentially support the nitrogen supply of the host plants.

16.
Microb Ecol ; 45(1): 72-87, 2003 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-12469246

RESUMEN

A collection of 821 rhizobacteria from cucumber, originating from different root locations and stages of plant development, was screened for potential biocontrol agents of Pythium aphanidermatum (Edson) Fitzp. The screening procedure exploited carbon source utilization profiles and growth rates of bacteria as indicators of a partial niche overlap with the pathogen. The bacteria were tested for growth on nine carbon sources (glucose, fucose, sucrose, maltose, asparagine, alanine, galacturonic acid, succinic acid, and linoleic acid), most of which are reported to be used by the zoospores of P. aphanidermatum in the infection process. The isolates were classified as fast- or slow-growing, depending on their growth rate in 1/10 strength TSB. By nonhierarchical cluster analysis, 20 clusters were generated of bacteria with similar profiles of carbon source utilization. Redundancy analysis showed that the type of root sample explained 47% of the variance found in the relative abundance of bacteria from the clusters. Bacteria from clusters using none or few of the carbon sources, e.g., maltose and linoleic acid, with many slow-growing isolates, showed a preference for plants in the vegetative or generative stage, or for old root regions (root base). Bacteria from clusters with fast-growing isolates, using many carbon sources, were relatively abundant in the seedling stage. A selection of 127 bacteria from the different clusters was tested for disease suppressive capabilities in bioassays on young cucumber plants in nutrient solution, inoculated with zoospores of P. aphanidermatum. Nine of these bacteria produced biosurfactants, and 27 showed antibiosis against mycelial growth in plate assays. For 31 isolates, significant positive effects on plant biomass were shown, as analyzed with a general linear regression model. For most isolates, these effects occurred only in one of two replicate assays and no reductions in the degree of root and crown rot were found. Of the isolates that used many of the tested carbon sources, only four had positive effects on plant biomass. The majority of the isolates that positively affected plant biomass used few to moderate numbers of carbon sources and did not produce antibiotics or biosurfactants. In conclusion, competition for the tested carbon sources with the zoospores did not play a decisive role in disease suppression, and no clear relation was found between ecophysiological traits and disease suppression. Only isolate 3.1T8, isolated from root tips in the generative stage of plant growth, significantly increased plant biomass and suppressed root and crown rot symptoms in five out of six bioassays. The isolate produced an antifungal substance in plate assays and showed biosurfactant production in several (cucumber-derived) media.


Asunto(s)
Bacterias/patogenicidad , Cucumis sativus/microbiología , Control Biológico de Vectores , Pythium/microbiología , Pythium/patogenicidad , Biomasa , Carbono/metabolismo , Evaluación Preclínica de Medicamentos , Raíces de Plantas/microbiología
17.
Appl Environ Microbiol ; 37(4): 686-92, 1979 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-16345366

RESUMEN

Direct microscopic measurements of biomass in soil require conversion factors for calculation of the mass of microorganisms from the measured volumes. These factors were determined for two bacteria, five fungi, and a yeast isolated from soil. Moisture stress conditions occurring in nature were simulated by growth in two media using shake cultures, on agar plates, and on membranes held at 34, 330, and 1,390 kPa of suction. The observed conversion factors, i.e., the ratio between dry weight and wet volume, generally increased with increasing moisture stress. The ratios for fungi ranged from 0.11 to 0.41 g/cm with an average of 0.33 g/cm. Correction of earlier data assuming 80% water and a wet-weight specific gravity of 1.1 would require a conversion factor of 1.44. The dry-weight specific gravity of bacteria and yeasts ranged from 0.38 to 1.4 g/cm with an average of 0.8 g/cm. These high values can only occur at 10% ash if no more than 50% of the cell is water, and a specific conversion factor to correct past data for bacterial biomass has not yet been suggested. The high conversion factors for bacteria and yeast could not be explained by shrinkage of cells due to heat fixing, but shrinkage during preparation could not be completely discounted. Moisture stress affected the C, N, and P content of the various organisms, with the ash contents increasing with increasing moisture stress. Although further work is necessary to obtain accurate conversion factors between biovolume and biomass, especially for bacteria, this study clearly indicates that existing data on the specific gravity and the water and nutrient content of microorganisms grown in shake cultures cannot be applied when quantifying the soil microbial biomass.

18.
Appl Environ Microbiol ; 57(12): 3482-8, 1991 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-16348599

RESUMEN

The transfer of a genetically marked derivative of plasmid RP4, RP4p, from Pseudomonas fluorescens to members of the indigenous microflora of the wheat rhizosphere was studied by using a bacteriophage that specifically lyses the donor strain and a specific eukaryotic marker on the plasmid. Transfer of RP4p to the wheat rhizosphere microflora was observed, and the number of transconjugants detected was approximately 10 transconjugants per g of soil when 10 donor cells per g of soil were added; transfer in the corresponding bulk soil was slightly above the limit of detection. All of the indigenous transconjugants which we analyzed contained a 60-kb plasmid and were able to transfer this plasmid to a Nx RpP. fluorescens recipient strain. The indigenous transconjugants were identified as belonging to Pseudomonas spp., Enterobacter spp., Comamonas spp., and Alcaligenes spp.

19.
Appl Environ Microbiol ; 56(2): 495-502, 1990 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-16348125

RESUMEN

The importance of microniches for the survival of introduced Rhizobium leguminosarum biovar trifolii cells was studied in sterilized and recolonized sterilized loamy sand and silt loam. The recolonized soils contained several species of soil microorganisms but were free of protozoa. Part of these soil samples was inoculated with the flagellate Bodo saltans, precultured on rhizobial cells. The introduced organisms were enumerated in different soil fractions by washing the soil, using a standardized washing procedure. With this method, free organisms and organisms associated with soil particles or aggregates >50 mum were separated. The total number of rhizobia was influenced slightly (silt loam) or not at all (loamy sand) by the recolonization with microorganisms or by the addition of flagellates alone. However, when both flagellates and microorganisms were present, numbers of rhizobia decreased drastically. This decrease was more than the sum of both effects separately. Nevertheless, populations of rhizobia were still higher than in natural soil. In the presence of flagellates, higher percentages of rhizobia and other microorganisms were associated with soil particles or aggregates >50 mum than in the absence of flagellates. In recolonized soils, however, the percentages of particle-associated rhizobia were lower than in soils not recolonized previous to inoculation. Thus, the presence of other microorganisms hindered rhizobial colonization of sites where they are normally associated with soil particles or aggregates.

20.
Appl Environ Microbiol ; 63(5): 1965-73, 1997 May.
Artículo en Inglés | MEDLINE | ID: mdl-16535606

RESUMEN

The fates of Pseudomonas fluorescens R2fR and its mutant derivative RIWE8, which contains a lacZ reporter gene responsive to wheat root exudate, were compared in a field microplot. Inoculant survival, root colonization, translocation, resistance to stress factors, and reporter gene activity were assessed in bulk and wheat rhizosphere soils. Populations of both strains declined gradually in bulk and wheat rhizosphere soils and on the wheat rhizoplane as determined by specific CFU and immunofluorescence (IF). In samples from both bulk soil and wheat rhizosphere, IF cell counts were up to 3 orders of magnitude greater than the corresponding numbers of CFU after 120 days, indicating the presence of nonculturable inoculant cells. Estimates of RIWE8-specific target DNA molecule numbers in bulk soil samples 3 and 120 days after inoculation by most-probable-number PCR coincided with the corresponding CFU values. Transport of both strains to deeper soil layers was observed by 3 days after introduction into the microplot. Both strains colonized wheat roots similarly, and cells were seen scattered on the surface of 1-month-old wheat seedling roots by immunogold labelling-scanning electron microscopy. On average, reporter gene activity was significantly higher in wheat rhizosphere soil containing RIWE8 cells than in bulk soil or in soils containing R2fR cells. For both strains, resistance to the four stress factors ethanol, high temperature, high osmotic tension, and oxidative stress increased progressively with residence in soil. Cells from the rhizosphere of 11-day-old seedlings showed similar levels of resistance to osmotic and oxidative stresses and enhanced resistance to ethanol and heat as compared to cells from bulk soil. By 37 days, populations of R2fR and RIWE8 in the rhizosphere were significantly more sensitive to osmotic stress than were populations in bulk soil, whereas differences in response to the other stress factors were less evident. Hence, except for the induction of reporter gene expression in strain RIWE8 in the wheat rhizosphere, the data indicated that there were no great differences in the ecological properties in soil between the lacZ-modified and parental strains.

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