Elevated atmospheric CO2 drives decreases in stable soil organic carbon in arid ecosystems: Evidence from a physical fractionation and organic compound analysis.

The increasing concentration of CO2 in the atmosphere is perturbing the global carbon (C) cycle, altering stocks of organic C, including soil organic matter (SOM). The effect of this disturbance on soils in arid ecosystems may differ from other ecosystems due to water limitation. In this study, we conducted a density fractionation on soils previously harvested from the Nevada Desert FACE Facility (NDFF) to understand how elevated atmospheric CO2 (eCO2 ) affects SOM stability. Soils from beneath the perennial shrub, Larrea tridentata, and from unvegetated interspace were subjected to a sodium polytungstate density fractionation to separate light, particulate organic matter (POM, <1.85 g/cm3 ) from heavier, mineral associated organic matter (MAOM, >1.85 g/cm3 ). These fractions were analyzed for organic C, total N, δ13 C and δ15 N, to understand the mechanisms behind changes. The heavy fraction was further analyzed by pyrolysis GC/MS to assess changes in organic compound composition. Elevated CO2 decreased POM-C and MAOM-C in soils beneath L. tridentata while interspace soils exhibited only a small increase in MAOM-N. Analysis of δ13 C revealed incorporation of new C into both POM and MAOM pools indicating eCO2 stimulated rapid turnover of both POM and MAOM. The largest losses of POM-C and MAOM-C observed under eCO2 occurred in soils 20-40 cm in depth, highlighting that belowground C inputs may be a significant driver of SOM decomposition in this ecosystem. Pyrolysis GC/MS analysis revealed a decrease in organic compound diversity in the MAOM fraction of L. tridentata soils, becoming more similar to interspace soils under eCO2 . These results provide further evidence that MAOM stability may be compromised under disturbance and that SOC stocks in arid ecosystems are vulnerable under continued climate change.

Reconciling multiple impacts of nitrogen enrichment on soil carbon: plant, microbial and geochemical controls.

Impacts of reactive nitrogen (N) inputs on ecosystem carbon (C) dynamics are highly variable, and the underlying mechanisms remain unclear. Here, we proposed a new conceptual framework that integrates plant, microbial and geochemical mechanisms to reconcile diverse and contrasting impacts of N on soil C. This framework was tested using long-term N enrichment and acid addition experiments in a Mongolian steppe grassland. Distinct mechanisms could explain effects of N on particulate and mineral-associated soil C pools, potentially explaining discrepancies among previous N addition studies. While plant production predominated particulate C changes, N-induced soil acidification strongly affected mineral-associated C through decreased microbial growth and pH-sensitive associations between iron and aluminium minerals and C. Our findings suggest that effects of N-induced acidification on microbial respiration and geochemical properties should be included in Earth system models that predict ecosystem C budgets under future N deposition/input scenarios.

Little effects on soil organic matter chemistry of density fractions after seven years of forest soil warming.

Rising temperatures enhance microbial decomposition of soil organic matter (SOM) and thereby increase the soil CO2 efflux. Elevated decomposition rates might differently affect distinct SOM pools, depending on their stability and accessibility. Soil fractions derived from density fractionation have been suggested to represent SOM pools with different turnover times and stability against microbial decomposition. To investigate the effect of soil warming on functionally different soil organic matter pools, we here investigated the chemical and isotopic composition of bulk soil and three density fractions (free particulate organic matter, fPOM; occluded particulate organic matter, oPOM; and mineral associated organic matter, MaOM) of a C-rich soil from a long-term warming experiment in a spruce forest in the Austrian Alps. At the time of sampling, the soil in this experiment had been warmed during the snow-free period for seven consecutive years. During that time no thermal adaptation of the microbial community could be identified and CO2 release from the soil continued to be elevated by the warming treatment. Our results, which included organic carbon content, total nitrogen content, δ13C, Δ14C, δ15N and the chemical composition, identified by pyrolysis-GC/MS, showed no significant differences in bulk soil between warming treatment and control. Surprisingly, the differences in the three density fractions were mostly small and the direction of warming induced change was variable with fraction and soil depth. Warming led to reduced N content in topsoil oPOM and subsoil fPOM and to reduced relative abundance of N-bearing compounds in subsoil MaOM. Further, warming increased the δ13C of MaOM at both sampling depths, reduced the relative abundance of carbohydrates while it increased the relative abundance of lignins in subsoil oPOM. As the size of the functionally different SOM pools did not significantly change, we assume that the few and small modifications in SOM chemistry result from an interplay of enhanced microbial decomposition of SOM and increased root litter input in the warmed plots. Overall, stable functional SOM pool sizes indicate that soil warming had similarly affected easily decomposable and stabilized SOM of this C-rich forest soil.

Interactive effects of elevated CO2 and nitrogen deposition on fatty acid molecular and isotope composition of above- and belowground tree biomass and forest soil fractions.

Atmospheric carbon dioxide (CO2) and reactive nitrogen (N) concentrations have been increasing due to human activities and impact the global carbon (C) cycle by affecting plant photosynthesis and decomposition processes in soil. Large amounts of C are stored in plants and soils, but the mechanisms behind the stabilization of plant- and microbial-derived organic matter (OM) in soils are still under debate and it is not clear how N deposition affects soil OM dynamics. Here, we studied the effects of 4 years of elevated (13C-depleted) CO2 and N deposition in forest ecosystems established in open-top chambers on composition and turnover of fatty acids (FAs) in plants and soils. FAs served as biomarkers for plant- and microbial-derived OM in soil density fractions. We analyzed above- and belowground plant biomass of beech and spruce trees as well as soil density fractions for the total organic C and FA molecular and isotope (δ13C) composition. FAs did not accumulate relative to total organic C in fine mineral fractions, showing that FAs are not effectively stabilized by association with soil minerals. The δ13C values of FAs in plant biomass increased under high N deposition. However, the N effect was only apparent under elevated CO2 suggesting a N limitation of the system. In soil fractions, only isotope compositions of short-chain FAs (C16+18) were affected. Fractions of 'new' (experimental-derived) FAs were calculated using isotope depletion in elevated CO2 plots and decreased from free light to fine mineral fractions. 'New' FAs were higher in short-chain compared to long-chain FAs (C20-30), indicating a faster turnover of short-chain compared to long-chain FAs. Increased N deposition did not significantly affect the quantity of 'new' FAs in soil fractions, but showed a tendency of increased amounts of 'old' (pre-experimental) C suggesting that decomposition of 'old' C is retarded by high N inputs.

Large amounts of labile organic carbon in permafrost soils of northern Alaska.

Permafrost-affected soils of the northern circumpolar region represent 50% of the terrestrial soil organic carbon (SOC) reservoir and are most strongly affected by climatic change. There is growing concern that this vast SOC pool could transition from a net C sink to a source. But so far little is known on how the organic matter (OM) in permafrost soils will respond in a warming future, which is governed by OM composition and possible stabilization mechanisms. To investigate if and how SOC in the active layer and adjacent permafrost is protected against degradation, we employed density fractionation to separate differently stabilized SOM fractions. We studied the quantity and quality of OM in different compartments using elemental analysis, 13 C solid-phase nuclear magnetic resonance (13 C-NMR) spectroscopy, and 14 C analyses. The soil samples were derived from 16 cores from drained thaw lake basins, ranging from 0 to 5500 years of age, representing a unique series of developing Arctic soils over time. The normalized SOC stocks ranged between 35.5 and 86.2 kg SOC m-3 , with the major amount of SOC located in the active layers. The SOC stock is dominated by large amounts of particulate organic matter (POM), whereas mineral-associated OM especially in older soils is of minor importance on a mass basis. We show that tremendous amounts of over 25 kg OC per square meter are stored as presumably easily degradable OM rich in carbohydrates. Only about 10 kg OC per square meter is present as presumably more stable, mineral-associated OC. Significant amounts of the easily degradable, carbohydrate-rich OM are preserved in the yet permanently frozen soil below the permafrost table. Forced by global warming, this vast labile OM pool could soon become available for microbial degradation due to the continuous deepening of the annually thawing active layer.

Nitrogen deposition promotes the production of new fungal residues but retards the decomposition of old residues in forest soil fractions.

Atmospheric nitrogen (N) deposition has frequently been observed to increase soil carbon (C) storage in forests, but the underlying mechanisms still remain unclear. Changes in microbial community composition and substrate use are hypothesized to be one of the key mechanisms affected by N inputs. Here, we investigated the effects of N deposition on amino sugars, which are used as biomarkers for fungal- and bacterial-derived microbial residues in soil. We made use of a 4-year combined CO2 enrichment and N deposition experiment in model forest ecosystems, providing a distinct (13) C signal for 'new' and 'old' C in soil organic matter and microbial residues measured in density and particle-size fractions of soils. Our hypothesis was that N deposition decreases the amount of fungal residues in soils, with the new microbial residues being more strongly affected than old residues. The soil fractionation showed that organic matter and microbial residues are mainly stabilized by association with soil minerals in the heavy and fine fractions. Moreover, the bacterial residues are relatively enriched at mineral surfaces compared to fungal residues. The (13) C tracing indicated a greater formation of fungal residues compared to bacterial residues after 4 years of experiment. In contradiction to our hypotheses, N deposition significantly increased the amount of new fungal residues in bulk soil and decreased the decomposition of old microbial residues associated with soil minerals. The preservation of old microbial residues could be due to decreased N limitation of microorganisms and therefore a reduced dependence on organic N sources. This mechanism might be especially important in fine heavy fractions with low C/N ratios, where microbial residues are effectively protected from decomposition by association with soil minerals.

Transformation and stabilization of pyrogenic organic matter in a temperate forest field experiment.

Pyrogenic organic matter (PyOM) decomposes on centennial timescale in soils, but the processes regulating its decay are poorly understood. We conducted one of the first studies of PyOM and wood decomposition in a temperate forest using isotopically labeled organic substrate, and quantified microbial incorporation and physico-chemical transformations of PyOM in situ. Stable-isotope (¹³C and ¹5N) enriched PyOM and its precursor wood were added to the soil at 2 cm depth at ambient (N0) and increased (N+) levels of nitrogen fertilization. The carbon (C) and nitrogen (N) of added PyOM or wood were tracked through soil to 15 cm depth, in physically separated soil density fractions and in benzene polycarboxylic acids (BPCA) molecular markers. After 10 months in situ, more PyOM-derived C (>99% of initial 13C-PyOM) and N (90% of initial ¹5N-PyOM) was recovered than wood derived C (48% of 13C-wood) and N(89% under N0 and 48% under N+). PyOM-C and wood-C migrated at the rate of 126 mm yr ⁻¹ with 3-4% of PyOMC and 4-8% of wood-C recovered below the application depth. Most PyOM C was recovered in the free light fraction(fLF) (74%), with 20% in aggregate-occluded and 6% in mineral associated fractions ­ fractions that typically have much slower turnover times. In contrast, wood C was recovered mainly in occluded (33%) or dense fraction (27%).PyOM addition induced loss of native C from soil (priming effect), particularly in fLF (13%). The total BPCA-C content did not change but after 10 months the degree of aromatic condensation of PyOM decreased, as determined by relative contribution of benzene hexa-carboxylic acid (B6CA) to the total BPCA C. Soil microbial biomass assimilated 6-10% of C from the wood, while PyOM contributions was negligible (0.14­0.18%). The addition of N had no effect on the dynamics of PyOM while limited effect on wood.

Polypropylene microplastics affect the distribution and bioavailability of cadmium by changing soil components during soil aging.

Compared with the widespread and serious heavy metal contamination in soils, microplastic pollution has gained attention only recently. Little is known about how microplastics affect the distribution of heavy metals in soils, especially across soil components level. In this study, a 180-day soil aging experiment and soil density fractionation were performed to investigate the effect of polypropylene (PP) microplastics on the binding behavior of cadmium (Cd) to solid components, i.e. particulate organic matter, organo-mineral complexes (OMC), and mineral. Results showed addition of 2-10% microplastics in soils induced the decomposition of OMC fraction by 10.88-23.10%. Compared to the control, the content of dissolved organic carbon increased, and pH, humic substances, and soil organic matter decreased with microplastics. After 180d of aging, the content of Cd in OMC fraction increased by 17.92%, while microplastics made Cd contents decline by 10.01-19.75%. The impacts strongly depended on the dose and surface characteristic of microplastics. Overall, PP microplastics increased the concentration of bioavailable Cd in soils via decreasing soil retention of Cd by the OMC fraction. These findings based on the solid components level will provide a new perspective for understanding microplastics effects on soil systems and pollutants.

Embedding of biochar in soil mineral fractions: Evidence from benzene polycarboxylic acids molecular biomarkers.

Investigators are debating on the positive and negative priming effects of biochar on native soil organic carbon (SOC), which is largely attributed to the technical barrier of identifying biochar contribution to the apparently measured SOC or mineralized CO2. We combined benzene polycarboxylic acids (BPCAs) molecular biomarkers and soil particle density fractionation to identify biochar contributions to the carbon content in three representative allitic soils in Yunnan. The soil-biochar mixture was incubated for one-month to avoid significant biodegradation of biochar. The results showed that BPCAs were mainly distributed in free light fractions (fLF) up to 87 % of the total BPCAs contents after one month incubation. Recognition of BPCAs in occluded light fractions (oLF) and heavy fractions (HF) suggested a significant interaction between biochar and soil mineral particles. In addition, the percentage of B6CA is comparable or even higher in HF than in fLF or oLF. Thus, biochar-mineral interactions may be an additional stabilization mechanism besides the condensed aromatic structures in biochar. The apparently measured carbon contents increased after biochar application, and both positive and negative priming effects to native SOC were observed after deducting biochar contents based an accurate calculation from BPCAs. The most native SOC depletion (positive priming effects) was noted for the soil with the most favored biochar embedding in soil mineral compositions. This study emphasized that combining BPCAs molecular biomarkers and soil particle density fractionation could accurately quantify different carbon pools, and thus facilitate a comprehensive understanding on the stabilization and turnover of biochar in soils.

Mechanisms controlling the stabilization of soil organic matter in agricultural soils as amended with contrasting organic amendments: Insights based on physical fractionation coupled with 13C NMR spectroscopy.

Soil organic matter (SOM) has vital roles in the global carbon (C) cycle and the use of organic amendments (OAs) to maintain or improve SOM levels is a promising practice. However, the mechanisms underlying SOM stabilization in OA-amended soils remain insufficiently resolved. For more effective understanding on such issues, we examined soil samples from a long-term experimental plot (26-31 years) that included six treatments, namely, a chemical fertilizer (CF) alone (CF), a bark compost plus CF (BC + CF), a coffee residue compost plus CF (CRC + CF), a cattle manure compost plus CF (CMC + CF), and a cattle manure (CMC) or sewage sludge compost (SSC) alone at a higher application rate, using physical fractionation. In the fractionation, free particulate SOM (fSOM), free SOM occluded in aggregates (oSOM), and SOM weakly bound to minerals (wSOM; s.g. 1.6-2.0 g cm-3) and strongly (sSOM; s.g. >2.0 g cm-3) were separated and characterized using 13C nuclear magnetic resonance (NMR) along with OAs and bulk soil samples. The long-term OA applications enhanced the total C accumulation and the amount of C accumulated as oSOM, wSOM, and sSOM correlated positively with the total C content. The application of BC or CRC resulted in a greater accumulation of fSOM. Conversely, the continuous application of SSC or CMC, which has a high N content and a low C/N ratio, led to a greater accumulation of C, mainly as wSOM. Our findings suggest that both the quality and quantity of OAs control the forms of C that accumulate and this involves different mechanistic pathways. We suggest that the abundant alkyl C in the wSOM and sSOM fractions was SSC-derived SOM in the SSC soil while in the case of the CMC soil, this was due to the increased contribution of microbial-derived SOM.

Comparative trace metal assessment in phytoplankton using size and density fractionation.

Trace metal assessment in marine phytoplankton is challenging due to complex assemblages and variable amounts of abiogenic suspended particulates. Using aliquots, this study were able to compare trace metal concentrations in plankton samples subjected to size and density fractionation. Elements including Cr, Mn, Fe, Ni, Cu, Zn, As, Sr, Hg, and Pb were analyzed by inductively coupled plasma mass spectrometer (ICP-MS). Trace metals were found to be significantly higher in size fractionated than density fractionated plankton for both small (1.2-50 µm) and large (50-120 µm) fractions. Metals from abiogenic sources (61-88%) also significantly contributed to trace metals detected in 1.2-120 µm suspended particulates collected from Kaohsiung Harbor. Results suggest that size fractionation can potentially overestimate trace metals in phytoplankton. It is therefore recommended combining the two methods by first isolating different size fractions followed by density fractionation to separate phytoplankton from zooplankton, and abiogenic particulates from phytoplankton assemblages, respectively.

Accumulation of 137Cs in aggregated organomineral assemblage in pasture soils 8 years after the accident at the Fukushima Daiichi nuclear power plant.

Despite the presence of minerals that allow Cs fixation in soils, 137Cs remains available to crops for several years after its deposition, particularly in pasture soils. Larger amounts of organic matter derived from herbage residues are accumulated in pasture soils than in tilled farmland soils. As the above-ground part of herbage crops initially received airborne 137Cs during the accident at Fukushima Daiich nuclear power plant (FDNPP), the organic matter originated from the contaminated herbage should play an important role in the fate of 137Cs in soils. To evaluate the role of organic matter on 137Cs distribution between potentially mobile and immobile fractions, we compared the distribution of 137Cs and stable 133Cs, which are differently associated with organic matter, by sequential extraction and density fractionation. Soil samples were collected 8 years after the accident from Andosols in pasture fields located about 160 km southwest of FDNPP. More than 90% of 137Cs was not extracted even after oxidative digestion of organic matter, suggesting that most 137Cs was strongly associated with soil minerals. Density fractionation results showed that the 137Cs/133Cs ratio was highest in the density fraction of 1.6-1.8 g cm-3, in which organic matter -including fragmented and decomposed plant detritus -was associated with minerals. Mineral-free organic matter, mostly composed of fresh plant detritus (<1.6 g cm-3), had a higher 137Cs/133Cs ratio than that of crops harvested in the same year of soil sampling. Thus, the transfer of 137Cs from soil to plants decreased with cultivation cycles. Our results demonstrate that plant-available 137Cs in pasture soil decreased with aging time, not only through increased 137Cs fixation in mineral-dominated fractions but also through its physical sequestration in aggregates.

Evidence linking calcium to increased organo-mineral association in soils.

Geochemical indicators are emerging as important predictors of soil organic carbon (SOC) dynamics, but evidence concerning the role of calcium (Ca) is scarce. This study investigates the role of Ca prevalence in SOC accumulation by comparing otherwise similar sites with (CaCO3-bearing) or without carbonates (CaCO3-free). We measured the SOC content and indicators of organic matter quality (C stable isotope composition, expressed as δ 13C values, and thermal stability) in bulk soil samples. We then used sequential sonication and density fractionation (DF) to separate two occluded pools from free and mineral-associated SOC. The SOC content, mass, and δ 13C values were determined in all the fractions. X-ray photoelectron spectroscopy was used to investigate the surface chemistry of selected fractions. Our hypothesis was that occlusion would be more prevalent at the CaCO3-bearing site due to the influence of Ca on aggregation, inhibiting oxidative transformation, and preserving lower δ 13C values. Bulk SOC content was twice as high in the CaCO3-bearing profiles, which also had lower bulk δ 13C values, and more occluded SOC. Yet, contrary to our hypothesis, occlusion only accounted for a small proportion of total SOC (< 10%). Instead, it was the heavy fraction (HF), containing mineral-associated organic C, which accounted for the majority of total SOC and for the lower bulk δ 13C values. Overall, an increased Ca prevalence was associated with a near-doubling of mineral-associated SOC content. Future investigations should now aim to isolate Ca-mediated complexation processes that increase organo-mineral association and preserve organic matter with lower δ 13C values. SUPPLEMENTARY INFORMATION: The online version of this article (10.1007/s10533-021-00779-7) contains supplementary material, which is available to authorized users.

Dataset on soil carbon dioxide fluxes from an incubation with tropical peat from three different land-uses in Jambi Sumatra Indonesia.

Conversion of tropical peat swamp forests to increase and agricultural production has generated substantial peat carbon loss in the Asia-Pacific region. Different land-uses and management practices oxidize the tropical peat at diverse rates due mainly to different water table levels. In recent years, several studies have measured soil carbon dioxide emissions in-situ; however, only few studies have evaluated the effect of moisture on carbon dioxide fluxes in incubation experiments. Here, we present the dataset of an incubation performed with 360 intact peat cores from three different land-uses (i.e. 120 from intact peat swamp forest; 120 from drained logged peat forest; and 120 from oil palm plantation) collected on the peat dome of Jambi Sumatra Indonesia. Different moisture levels in the intact cores were set by either drying the intact peat cores for short period of time or by adding extra water before the incubation. Dynamic dark aerobic incubation in airtight containers coupled with carbon dioxide measurement with an infrared gas analyser and the gas fluxes was used to measure to gas fluxes. The average carbon dioxide fluxes were 5.38 ± 0.91, 4.15 ± 0.35 and 1.55 ± 0.13 µg CO2-C g-1 h-1 for the intact peat swamp forest, drained logged peat forest and oil palm plantation, respectively.

The detrital input and removal treatment (DIRT) network: Insights into soil carbon stabilization.

Ecological research networks functioning across climatic and edaphic gradients are critical for improving predictive understanding of biogeochemical cycles at local through global scales. One international network, the Detrital Input and Removal Treatment (DIRT) Project, was established to assess how rates and sources of plant litter inputs influence accumulations or losses of organic matter in forest soils. DIRT employs chronic additions and exclusions of aboveground litter inputs and exclusion of root ingrowth to permanent plots at eight forested and two shrub/grass sites to investigate how soil organic matter (SOM) dynamics are influenced by plant detrital inputs across ecosystem and soil types. Across the DIRT network described here, SOM pools responded only slightly, or not at all, to chronic doubling of aboveground litter inputs. Explanations for the slow or even negative response of SOM to litter additions include increased decomposition of new inputs and priming of old SOM. Evidence of priming includes increased soil respiration in litter addition plots, decreased dissolved organic carbon (DOC) output from increased microbial activity, and biochemical markers in soil indicating enhanced SOM degradation. SOM pools decreased in response to chronic exclusion of aboveground litter, which had a greater effect on soil C than did excluding roots, providing evidence that root-derived C is not more critical than aboveground litter C to soil C sequestration. Partitioning of belowground contributions to total soil respiration were predictable based on site-level soil C and N as estimates of site fertility; contributions to soil respiration from root respiration were negatively related to soil fertility and inversely, contributions from decomposing aboveground litter in soil were positively related to site fertility. The commonality of approaches and manipulations across the DIRT network has provided greater insights into soil C cycling than could have been revealed at a single site.

Preparation of Clathrin-Coated Vesicles From Arabidopsis thaliana Seedlings.

Clathrin coated vesicles (CCVs) mediate endocytosis of plasma membrane proteins and deliver their content to the endosomes for either subsequent recycling to the plasma membrane or transport to the vacuole for degradation. CCVs assemble also at the trans-Golgi network (TGN) and is responsible for the transport of proteins to other membranes. Oligomerization of clathrin and recruitment of adaptor protein complexes promote the budding and the release of CCVs. However, many of the details during plant CCV formation are not completely elucidated. The analysis of isolated CCVs is therefore important to better understand the formation of plant CCVs, their cargos and the regulation of clathrin-mediated transport processes. In this article, we describe an optimized method to isolate CCVs from Arabidopsis thaliana seedlings.

[Short-term Mechanism of Warming-induced Stability for Organic Carbon in the Karst Plateau Soil].

Elucidating the mechanisms of warming-induced stability for soil organic C is one of the keys for evaluating the tendency of soil C sources/sinks in projected global warming models. Organic C densities in soil, and soil physical and biochemical fractions, under different warming scenarios in the Karst Plateau were investigated following a 4-yr continuous warming using infrared radiators, via density fractionation and acid hydrolysis. Six treatments were arranged: no warming (ambient temp, CK); symmetric warming (ambient+2.0℃ full year); and lowly, moderately, highly, and extremely asymmetric warming (ambient+2.5℃/1.5℃, 3.0℃/1.0℃, 3.5℃/0.5℃, and 4.0℃/0℃ in winter-spring/summer-autumn seasons, respectively; LAW, MAW, HAW, and EAW). The moderately asymmetric warming was highly similar to a multi-year warming scenario in the study region. The results showed there were no significant differences in soil organic C densities in the surface layer (0-15 cm) among the warming treatments, with a range of 1.95 kg·m-2 to 2.02 kg·m-2, which is insignificantly different to the CK (1.94 kg·m-2). There were no significant differences in the C density of light and heavy fractions, and the recalcitrant heavy-fraction among the warming treatments, and between the warming and no warming treatments. The average recalcitrant C density of the light fraction in the warming treatments was 1.18 times higher than the CK, with a significantly higher recalcitrant C density of the light fraction in the symmetric warming, and lowly and moderately asymmetric warming treatments, compared to that of the CK. The recalcitrant C density and recalcitrant C index of the light fraction showed a tendency to decrease as the asymmetry of warming increased under the five warming scenarios. Warming had negligible effects on the organic C density in soil, and soil physical and biochemical fractions in the subsurface layer (15-30 cm). The results revealed that in the short-term, warming may increase the recalcitrance of non-protected C in the Karst Plateau soil. This is not necessarily an over- or underestimation of the effects of global warming on soil organic C density and the capacity of soil to protect C when subjected to symmetric warming, but may potentially overestimate the recalcitrance of organic C in the non-protected fraction of the surface layer (0-15 cm).

ATP-Driven Contraction of Phage T3 Capsids with DNA Incompletely Packaged In Vivo.

Adenosine triphosphate (ATP) cleavage powers packaging of a double-stranded DNA (dsDNA) molecule in a pre-assembled capsid of phages that include T3. Several observations constitute a challenge to the conventional view that the shell of the capsid is energetically inert during packaging. Here, we test this challenge by analyzing the in vitro effects of ATP on the shells of capsids generated by DNA packaging in vivo. These capsids retain incompletely packaged DNA (ipDNA) and are called ipDNA-capsids; the ipDNA-capsids are assumed to be products of premature genome maturation-cleavage. They were isolated via preparative Nycodenz buoyant density centrifugation. For some ipDNA-capsids, Nycodenz impermeability increases hydration and generates density so low that shell hyper-expansion must exist to accommodate associated water. Electron microscopy (EM) confirmed hyper-expansion and low permeability and revealed that 3.0 mM magnesium ATP (physiological concentration) causes contraction of hyper-expanded, lowpermeability ipDNA-capsids to less than mature size; 5.0 mM magnesium ATP (border of supraphysiological concentration) or more disrupts them. Additionally, excess sodium ADP reverses 3.0 mM magnesium ATP-induced contraction and re-generates hyper-expansion. The Nycodenz impermeability implies assembly perfection that suggests selection for function in DNA packaging. These findings support the above challenge and can be explained via the assumption that T3 DNA packaging includes a back-up cycle of ATP-driven capsid contraction and hyper-expansion.

How do soil organic carbon stocks change after cropland abandonment in Mediterranean humid mountain areas?

The effects of land use changes on soil carbon stocks are a matter of concern stated in international policy agendas on the mitigation of greenhouse emissions. Afforestation is increasingly viewed as an environmental restorative land use change prescription and is considered one of the most efficient carbon sequestration strategies currently available. Given the large quantity of CO2 that soils release annually, it is important to understand disturbances in vegetation and soil resulting from land use changes. The main objective of this study is to assess the effects of land abandonment, land use change and afforestation practices on soil organic carbon (SOC) dynamics. For this aim, five different land covers (bare soil, permanent pastureland, secondary succession, Pinus sylvestris (PS) and Pinus nigra (PN) afforestation), in the Central Spanish Pyrenees, were analysed. SOC dynamics have been studied in the bulk soil, and in the fractions separated according to two methodologies: (i) aggregate size distribution, and (ii) density fractionation, and rates of carbon mineralization have been determined by measuring CO2 evolution using an automated respirometer. The results showed that: (i) SOC contents were higher in the PN sites in the topsoil (10cm), (ii) when all the profiles were considered no significant differences were observed between pastureland and PN, (iii) SOC accumulation under secondary succession is a slow process, and (iv) pastureland should also be considered due to the relative importance in SOC stocks. The first step of SOC stabilization after afforestation is the formation of macro-aggregates promoted by large inputs of SOC, with a high contribution of labile organic matter. However, our respiration experiments did not show evidence of SOC stabilization. SOC mineralization was higher in the top layers and values decreased with depth. These results gain insights into which type of land management is most appropriate after land abandonment for SOC.

Carbon storage potential in size-density fractions from semi-natural grassland ecosystems with different productivities over varying soil depths.

Researchers have increasingly recognised a profound need for more information on SOC stocks in the soil and the factors governing their stability and dynamics. Many questions still remain unanswered about the interplay between changes in plant communities and the extent to which changes in aboveground productivity affect the carbon dynamics in soils through changes in its quantity and quality. Therefore, the main aim of this research was to examine the SOC accumulation potential of semi-natural grasslands of different productivities and determine the distribution of SOM fractions over varying soil depth intervals (0-10, 10-20, 20-30 30-50 50-80 and 80+cm). SOM fractionation was considered as a relative measure of stability to separate SOM associated with clay minerals from SOM of specific light densities less than 2 g cm(-3) (size-density fractionation). Two clay-associated fractions (CF1, <1 µm; and CF2, 1-2 µm) and two light fractions (LF1, <1.8 g cm(-3); and LF2, 1.8-2.0 g cm(-3)) were separated. The stability of these fractions was characterised by their carbon hot water extractability (CHWE) and stable carbon isotope composition. In the semi-natural grasslands studied, most OC was stored in the top 30 cm, where turnover is rapid. Effects of low productivity grasslands became only significantly apparent when fractional OC contributions of total SOM was considered (CF1 and LF1). In deeper soil depths OC was largely attributed to the CF1 fraction of low productivity grasslands. We suggest that the majority of OM in deeper soil depth intervals is microbially-derived, as evidenced by decreasing C/N ratios and decreasing δ(13)C values. The hot water extraction and natural δ(13)C abundance, employed here allowed the characterisation of SOM stabilisation properties, however how climatic changes affect the fate of OM within different soil depth intervals is still unknown.