Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 80
Filtrar
Más filtros

Tipo del documento
Intervalo de año de publicación
1.
Glob Chang Biol ; 30(2): e17199, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38385944

RESUMEN

Denitrification plays a critical role in soil nitrogen (N) cycling, affecting N availability in agroecosystems. However, the challenges in direct measurement of denitrification products (NO, N2 O, and N2 ) hinder our understanding of denitrification N losses patterns across the spatial scale. To address this gap, we constructed a data-model fusion method to map the county-scale denitrification N losses from China's rice fields over the past decade. The estimated denitrification N losses as a percentage of N application from 2009 to 2018 were 11.8 ± 4.0% for single rice, 12.4 ± 3.7% for early rice, and 11.6 ± 3.1% for late rice. The model results showed that the spatial heterogeneity of denitrification N losses is primarily driven by edaphic and climatic factors rather than by management practices. In particular, diffusion and production rates emerged as key contributors to the variation of denitrification N losses. These findings humanize a 38.9 ± 4.8 kg N ha-1 N loss by denitrification and challenge the common hypothesis that substrate availability drives the pattern of N losses by denitrification in rice fields.


Asunto(s)
Oryza , Desnitrificación , Proyectos de Investigación , Nitrógeno , China
2.
Appl Microbiol Biotechnol ; 108(1): 347, 2024 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-38805033

RESUMEN

Crop roots selectively recruit certain microbial taxa that are essential for supporting their growth. Within the recruited microbes, some taxa are consistently enriched in the rhizosphere across various locations and crop genotypes, while others are unique to specific planting sites or genotypes. Whether these differentially enriched taxa are different in community composition and how they interact with nutrient cycling need further investigation. Here, we sampled bulk soil and the rhizosphere soil of five soybean varieties grown in Shijiazhuang and Xuzhou, categorized the rhizosphere-enriched microbes into shared, site-specific, and variety-specific taxa, and analyzed their correlation with the diazotrophic communities and microbial genes involved in nitrogen (N) cycling. The shared taxa were dominated by Actinobacteria and Thaumarchaeota, the site-specific taxa were dominated by Actinobacteria in Shijiazhuang and by Nitrospirae in Xuzhou, while the variety-specific taxa were more evenly distributed in several phyla and contained many rare operational taxonomic units (OTUs). The rhizosphere-enriched taxa correlated with most diazotroph orders negatively but with eight orders including Rhizobiales positively. Each group within the shared, site-specific, and variety-specific taxa negatively correlated with bacterial amoA and narG in Shijiazhuang and positively correlated with archaeal amoA in Xuzhou. These results revealed that the shared, site-specific, and variety-specific taxa are distinct in community compositions but similar in associations with rhizosphere N-cycling functions. They exhibited potential in regulating the soybean roots' selection for high-efficiency diazotrophs and the ammonia-oxidizing and denitrification processes. This study provides new insights into soybean rhizosphere-enriched microbes and their association with N cycling. KEY POINTS: • Soybean rhizosphere affected diazotroph community and enriched nifH, amoA, and nosZ. • Shared and site- and variety-specific taxa were dominated by different phyla. • Rhizosphere-enriched taxa were similarly associated with N-cycle functions.


Asunto(s)
Bacterias , Glycine max , Rizosfera , Microbiología del Suelo , Glycine max/microbiología , Glycine max/crecimiento & desarrollo , Bacterias/clasificación , Bacterias/genética , Bacterias/metabolismo , Bacterias/aislamiento & purificación , Raíces de Plantas/microbiología , Ciclo del Nitrógeno , Nitrógeno/metabolismo , Archaea/genética , Archaea/clasificación , Archaea/metabolismo , Filogenia , ARN Ribosómico 16S/genética , Fijación del Nitrógeno , Oxidorreductasas/genética , Microbiota
3.
Bioessays ; 43(7): e2100010, 2021 07.
Artículo en Inglés | MEDLINE | ID: mdl-33956367

RESUMEN

Boreal forests store a globally significant pool of carbon (C), mainly in tree biomass and soil organic matter (SOM). Although crucial for future climate change predictions, the mechanisms underlying C stabilization are not well understood. Here, recently discovered mechanisms behind SOM stabilization, their level of understanding, interrelations, and future directions in the field are provided. A recently unraveled mechanism behind C stabilization via interaction of root-derived tannins with fungal necromass emphasizing fungal necromass chemistry is brought forth. The long-lasting dogma of the stability of SOM on minerals is challenged and the newest insights from the field of soil fauna and their influence on SOM stabilization are provided. In conclusion, mechanisms unraveled during the last decade are crucial steps forward to draw a holistic view of the main drivers of SOM stabilization.


Asunto(s)
Suelo , Taiga , Biomasa , Carbono , Microbiología del Suelo , Árboles
4.
J Environ Manage ; 347: 119078, 2023 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-37757683

RESUMEN

Grazing causes changes in microbiome metabolic pathways affecting plant growth and soil physicochemical properties. However, how grazing intensity affects microbial processes is poorly understood. In semiarid steppe grassland in northern China, shotgun metagenome sequencing was used to investigate variations in soil carbon (C) and nitrogen (N) cycling-related genes after six years of the following grazing intensities: G0, control, no grazing; G1, 170 sheep days ha-1 year-1; G2, 340 sheep days ha-1 year-1; and G3, 510 sheep days ha-1 year-1. Taxa and functions of the soil microbiome associated with the C cycle decreased with increasing grazing intensity. Abundances of genes involved in C fixation and organic matter decomposition were altered in grazed sites, which could effects on vegetation decomposition and soil dissolved organic carbon (DOC) content. Compared with the control, the abundances of nitrification genes were higher in G1, but the abundances of N reduction and denitrification genes were lower, suggesting that light grazing promoted nitrification, inhibited denitrification, and increased soil NO3- content. Q-PCR further revealed that the copies of genes responsible for carbon fixation (cbbL) and denitrification (norB) decreased with increasing grazing intensity. The highest copy numbers of the nitrification genes AOA and AOB were in G1, whereas copy numbers of the denitrification gene nirK were the lowest. A multivariate regression tree indicated that changes in C fixation genes were linked to changes in soil DOC content, whereas soil NO3- content was linked with nitrification and denitrification under grazing. Thus, genes associated with C fixation and the N cycle affected how C fixation and N storage influenced soil physicochemical properties under grazing. The findings indicate that grazing intensity affected C and N metabolism. Proper grassland management regimes (e.g., G1) are beneficial to the balances between ecological protection of grasslands and plant production in the semiarid steppe.


Asunto(s)
Pradera , Suelo , Animales , Ovinos , Suelo/química , Metagenoma , Carbono/análisis , Nitrógeno/análisis , Microbiología del Suelo
5.
Environ Res ; 214(Pt 4): 113934, 2022 11.
Artículo en Inglés | MEDLINE | ID: mdl-36027962

RESUMEN

The overuse of N fertilizers has caused serious environmental problems (e.g., soil acidification, excessive N2O in the air, and groundwater contamination) and poses a serious threat to human health. Improving N fertilizer utilization efficiency and plant uptake is an alternative for N fertilizers overuses. Enterobacter cloacae is an opportunistic pathogen, also used as plant growth-promoting rhizobacteria (PGPR), has been widely presented in the fields of bioremediation and bioprotection. Here we developed a new N fixation-release model by combining biochar with E. cloacae. The efficiency of the model was evaluated using a greenhouse pot experiment with maize (Zea mays L.) as the test crop. The results showed that biochar combined with E. cloacae significantly increased the N content. The application of biochar combined with E. cloacae increased total N in soil by 33% compared with that of N fertilizers application. The N-uptake and utilization efficiency (NUE) in plant was increased 17.03% and 14.18%, respectively. The activities of urease, dehydrogenase and fluorescein diacetate hydrolase (FDA) was improved, the catalase (CAT) activity decreased. Analysis of the microbial community diversity revealed the abundance of Proteobacteria, Actinobacteria, Firmicutes, and Gemmatimonadetes were significantly improved. The mechanism under the model is that E. cloacae acted as N-fixation by capturing N2 from air. Biochar served as carrier, supporting better living environment for E. cloacae, also as adsorbent adsorbing N from fertilizer and from fixed N by E. cloacae, the adsorption in turn slower the N release. Altogether, the model promotes N utilization by plants, improves the soil environment, and reduces N pollution.


Asunto(s)
Fertilizantes , Nitrógeno , Agricultura/métodos , Bacterias , Contaminación Ambiental , Fertilizantes/análisis , Humanos , Nitrógeno/análisis , Suelo , Zea mays
6.
J Environ Manage ; 324: 116365, 2022 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-36202038

RESUMEN

Equilibrium in microbial dynamics and nitrogen transformation in the sediment is critical for maintaining healthy mariculture environment. However, our understanding about the impact of heavy metals on the bacterial community and nitrogen transformation functional genes in different mariculture patterns is still limited. Here, we analyzed 30 sediment samples in the vertical distribution from three different mariculture patterns mainly include open mariculture zone (K), closed mariculture pond (F) and pristine marine area (Q). Illumina MiSeq Sequencing was applied to investigate the bacterial community and structure in the sediment. Quantitative polymerase chain reaction (qPCR) was used to determine the effect of heavy metals on nitrogen transformation functional genes. Results showed that bacterial community and structure varied greatly in different mariculture patterns. Chloroflexi, Proteobacteria and Desulfobacterota were predominant phyla in the coastal mariculture area. High concentrations of heavy metals mainly enriched in the up layer (5-40 cm) of the sediment in the mariculture zone. The abundance of functional genes in the closed mariculture pond was much higher than the open mariculture zone and pristine marine area. And the high abundance of nitrification and denitrification functional genes mainly accumulated at the depth from 5 cm to 40 cm. Heavy metals content such as Fe, Cr, Mn, Ni, As, Cd, Pb and nutrient content NH4+-N, NO3--N and NO2--N were highly associated with bacterial community and nitrogen transformation functional genes. This study comprehensively elaborated the effect of heavy metals on the bacterial community and nitrogen transformation functional genes in different coastal mariculture patterns, indicating the possible role of closed mariculture pond in reducing nitrogen transformation efficiency, which will provide useful information for preventing pollution risk in the mariculture area.


Asunto(s)
Metales Pesados , Contaminantes Químicos del Agua , Nitrógeno/análisis , Sedimentos Geológicos/química , Monitoreo del Ambiente/métodos , Contaminantes Químicos del Agua/análisis , Acuicultura , Metales Pesados/análisis , Bacterias/genética , China
7.
Mol Syst Biol ; 16(6): e9419, 2020 06.
Artículo en Inglés | MEDLINE | ID: mdl-32490601

RESUMEN

Biological nitrogen fixation emerging from the symbiosis between bacteria and crop plants holds promise to increase the sustainability of agriculture. One of the biggest hurdles for the engineering of nitrogen-fixing organisms is an incomplete knowledge of metabolic interactions between microbe and plant. In contrast to the previously assumed supply of only succinate, we describe here the CATCH-N cycle as a novel metabolic pathway that co-catabolizes plant-provided arginine and succinate to drive the energy-demanding process of symbiotic nitrogen fixation in endosymbiotic rhizobia. Using systems biology, isotope labeling studies and transposon sequencing in conjunction with biochemical characterization, we uncovered highly redundant network components of the CATCH-N cycle including transaminases that interlink the co-catabolism of arginine and succinate. The CATCH-N cycle uses N2 as an additional sink for reductant and therefore delivers up to 25% higher yields of nitrogen than classical arginine catabolism-two alanines and three ammonium ions are secreted for each input of arginine and succinate. We argue that the CATCH-N cycle has evolved as part of a synergistic interaction to sustain bacterial metabolism in the microoxic and highly acid environment of symbiosomes. Thus, the CATCH-N cycle entangles the metabolism of both partners to promote symbiosis. Our results provide a theoretical framework and metabolic blueprint for the rational design of plants and plant-associated organisms with new properties to improve nitrogen fixation.


Asunto(s)
Arginina/metabolismo , Fijación del Nitrógeno , Ácido Succínico/metabolismo , Simbiosis , Adenosina Trifosfato/biosíntesis , Adenosina Trifosfato/metabolismo , Aminación , Arginasa/metabolismo , Bradyrhizobium/genética , Bradyrhizobium/fisiología , Isótopos de Carbono , Elementos Transponibles de ADN/genética , Transporte de Electrón , Eliminación de Gen , Marcaje Isotópico , Medicago/microbiología , Nitrogenasa/metabolismo , Fenotipo , Sinorhizobium/genética , Sinorhizobium/fisiología , Simbiosis/genética
8.
Bull Environ Contam Toxicol ; 106(2): 243-249, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33452610

RESUMEN

The concept of the Nitrogen (N) cycle has been modified over the years based on certain new pathways, including comammox, anammox, and DNRA (dissimilatory nitrate reduction to ammonium). Comammox, nitrification, anammox, denitrification, DNRA, and nitrogen fixation pathways play key roles in the N cycle in paddy soils. Pesticides and chemical fertilizers' effects on the N cycle in paddy soils together with the possible manifestation of these newly discovery pathways are the focus of this review. Both chemical fertilizers and pesticides' overuse affect nitrifying archaea/bacteria and denitrifying and anammox bacteria, while heavy metals affect the nitrification rates in paddy soils. To add extra value to this study, we quantified the comammox amoA single copy gene from the Nitrospira strain 'Nitrospira inopinata'. This review will help researchers access the latest information on the N cycle, particularly in the light of the most recent discoveries.


Asunto(s)
Microbiota , Plaguicidas , Bangladesh , Desnitrificación , Fertilizantes/análisis , Nitrificación , Nitrógeno , Ciclo del Nitrógeno , Oxidación-Reducción , Suelo
9.
Glob Chang Biol ; 26(2): 931-943, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31554024

RESUMEN

Nitrous oxide (N2 O) emissions from soil contribute to global warming and are in turn substantially affected by climate change. However, climate change impacts on N2 O production across terrestrial ecosystems remain poorly understood. Here, we synthesized 46 published studies of N2 O fluxes and relevant soil functional genes (SFGs, that is, archaeal amoA, bacterial amoA, nosZ, narG, nirK and nirS) to assess their responses to increased temperature, increased or decreased precipitation amounts, and prolonged drought (no change in total precipitation but increase in precipitation intervals) in terrestrial ecosystem (i.e. grasslands, forests, shrublands, tundra and croplands). Across the data set, temperature increased N2 O emissions by 33%. However, the effects were highly variable across biomes, with strongest temperature responses in shrublands, variable responses in forests and negative responses in tundra. The warming methods employed also influenced the effects of temperature on N2 O emissions (most effectively induced by open-top chambers). Whole-day or whole-year warming treatment significantly enhanced N2 O emissions, but daytime, nighttime or short-season warming did not have significant effects. Regardless of biome, treatment method and season, increased precipitation promoted N2 O emission by an average of 55%, while decreased precipitation suppressed N2 O emission by 31%, predominantly driven by changes in soil moisture. The effect size of precipitation changes on nirS and nosZ showed a U-shape relationship with soil moisture; further insight into biotic mechanisms underlying N2 O emission response to climate change remain limited by data availability, underlying a need for studies that report SFG. Our findings indicate that climate change substantially affects N2 O emission and highlights the urgent need to incorporate this strong feedback into most climate models for convincing projection of future climate change.


Asunto(s)
Cambio Climático , Ecosistema , Óxido Nitroso , Suelo , Tundra
10.
Environ Res ; 186: 109612, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32668552

RESUMEN

Nitrate (NO3-) reduction partitioning between denitrification, anaerobic ammonium oxidation (anammox), denitrifying anaerobic methane oxidation (DAMO), and dissimilatory nitrate reduction to ammonium (DNRA), can influence the nitrogen (N) use efficiency and crop production in arid farmland. The microbial structure, function and potential rates of denitrification, anammox, DAMO and DNRA, and their respective contributions to total NO3- reduction were investigated in rhizosphere and non-rhizosphere soil of four typical crops in north China by functional gene amplification, high-throughput sequencing, network analysis and isotopic tracing technique. The measured denitrification and DNRA rate varied from 0.0294 to 20.769 nmol N g-1 h-1and 2.4125-58.682 nmol N g-1 h-1, respectively, based on which DNRA pathway contributed to 84.44 ± 14.40% of dissimilatory NO3- reduction, hence dominated NO3- reduction processes compared to denitrification. Anammox and DAMO were not detected. High-throughput sequencing analysis on DNRA nrfA gene, and denitrification nirS and nirK genes demonstrated that these two processes did not correlate to corresponding gene abundance or dominant genus. RDA and Pearson's correlation analysis illustrated that DNRA rate was significantly correlated with the abundance of Chthiniobacter, as well as total organic matter (TOM); denitrification rate was significantly correlated with the abundance of Lautropia, so did TOM. Network analysis showed that the genus performed DNRA was the key connector in the microbial community of dissimilatory nitrate reducers. This study simultaneously investigated the dissimilatory nitrate reduction processes in rhizosphere and non-rhizosphere soils in arid farmland, highlighting that DNRA dominated NO3- reduction processes against denitrification. As denitrification results in N loss, whereas DNRA contributes to N retention, the relative contributions of DNRA versus denitrification activities should be considered appropriately when assessing N transformation processes and N fertilizer management in arid farmland fields.


Asunto(s)
Compuestos de Amonio , China , Desnitrificación , Granjas , Nitratos/análisis , Nitritos , Nitrógeno , Oxidación-Reducción , Rizosfera , Suelo
11.
Environ Res ; 183: 109146, 2020 04.
Artículo en Inglés | MEDLINE | ID: mdl-31991341

RESUMEN

The importance and contribution of nitrogen compounds and the related microbial nitrogen cycling processes in fresh snow are not well understood under the current research background. We collected fresh snow samples from 21 cities that 80% are from China during 2016 and 2017. Principal component analysis showed that SO42- were in the first principal component, and N-compounds were the second. Furthermore, the main pollutant ions SO42- and NO3- were from anthropogenic sources, and SO42- contributed (61%) more to the pollution load than NO3- (29%), which were confirmed through a series of precipitation mechanism analysis. We selected five N-cycle processes (consist of oxidation and reduction processes) for molecular biology experiments, including Ammonia-oxidation process, Nitrite-oxidation process, Denitrification process, Anaerobic-ammoxidation process (Anammox) and Dissimilatory nitrate reduction to ammonium process (DNRA). Except ammonia-oxidizing archaeal (AOA) and bacterial (AOB) amoA genes (above 107 copies g-1), molecular assays of key functional genes in various nitrogen conversion processes showed a belowed detection limit number, and AOB abundance was always higher than AOA. The determination of the microbial transformation rate using the 15N-isotope tracer technique showed that the potential rate of five N-conversion processes was very low, which is basically consistent with the results from molecular biology studies. Taken together, our results illustrated that microbial nitrogen cycle processes are not the primary biological processes causing the pollution in China fresh snow.


Asunto(s)
Compuestos de Amonio , Desnitrificación , Nitrógeno , Nieve , Amoníaco , China , Nitratos , Nitrógeno/metabolismo , Oxidación-Reducción , Nieve/química
12.
Int J Mol Sci ; 20(13)2019 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-31288391

RESUMEN

Dimethyl sulfoxide reductases (DMSO) are molybdoenzymes widespread in all domains of life. They catalyse not only redox reactions, but also hydroxylation/hydration and oxygen transfer processes. Although literature on DMSO is abundant, the biological significance of these enzymes in anaerobic respiration and the molecular mechanisms beyond the expression of genes coding for them are still scarce. In this review, a deep revision of the literature reported on DMSO as well as the use of bioinformatics tools and free software has been developed in order to highlight the relevance of DMSO reductases on anaerobic processes connected to different biogeochemical cycles. Special emphasis has been addressed to DMSO from extremophilic organisms and their role in nitrogen cycle. Besides, an updated overview of phylogeny of DMSOs as well as potential applications of some DMSO reductases on bioremediation approaches are also described.


Asunto(s)
Extremófilos , Proteínas Hierro-Azufre/genética , Proteínas Hierro-Azufre/metabolismo , Isoenzimas , Familia de Multigenes , Oxidorreductasas/genética , Oxidorreductasas/metabolismo , Filogenia , Coenzimas/química , Coenzimas/metabolismo , Extremófilos/genética , Extremófilos/metabolismo , Proteínas Hierro-Azufre/química , Redes y Vías Metabólicas , Metaloproteínas/química , Metaloproteínas/metabolismo , Molibdeno/química , Molibdeno/metabolismo , Cofactores de Molibdeno , Ciclo del Nitrógeno , Oxidación-Reducción , Oxidorreductasas/química , Pteridinas/química , Pteridinas/metabolismo , Relación Estructura-Actividad , Tungsteno/química , Tungsteno/metabolismo
13.
Ecol Lett ; 21(7): 1108-1118, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29736982

RESUMEN

The net balance of greenhouse gas (GHG) exchanges between terrestrial ecosystems and the atmosphere under elevated atmospheric carbon dioxide (CO2 ) remains poorly understood. Here, we synthesise 1655 measurements from 169 published studies to assess GHGs budget of terrestrial ecosystems under elevated CO2 . We show that elevated CO2 significantly stimulates plant C pool (NPP) by 20%, soil CO2 fluxes by 24%, and methane (CH4 ) fluxes by 34% from rice paddies and by 12% from natural wetlands, while it slightly decreases CH4 uptake of upland soils by 3.8%. Elevated CO2 causes insignificant increases in soil nitrous oxide (N2 O) fluxes (4.6%), soil organic C (4.3%) and N (3.6%) pools. The elevated CO2 -induced increase in GHG emissions may decline with CO2 enrichment levels. An elevated CO2 -induced rise in soil CH4 and N2 O emissions (2.76 Pg CO2 -equivalent year-1 ) could negate soil C enrichment (2.42 Pg CO2 year-1 ) or reduce mitigation potential of terrestrial net ecosystem production by as much as 69% (NEP, 3.99 Pg CO2 year-1 ) under elevated CO2 . Our analysis highlights that the capacity of terrestrial ecosystems to act as a sink to slow climate warming under elevated CO2 might have been largely offset by its induced increases in soil GHGs source strength.


Asunto(s)
Dióxido de Carbono , Gases de Efecto Invernadero , Metano , Ecosistema , Efecto Invernadero , Óxido Nitroso , Suelo
14.
New Phytol ; 220(4): 1285-1295, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-29206293

RESUMEN

Nitrous oxide (N2 O) is a potent, globally important, greenhouse gas, predominantly released from agricultural soils during nitrogen (N) cycling. Arbuscular mycorrhizal fungi (AMF) form a mutualistic symbiosis with two-thirds of land plants, providing phosphorus and/or N in exchange for carbon. As AMF acquire N, it was hypothesized that AMF hyphae may reduce N2 O production. AMF hyphae were either allowed (AMF) or prevented (nonAMF) access to a compartment containing an organic matter and soil patch in two independent microcosm experiments. Compartment and patch N2 O production was measured both before and after addition of ammonium and nitrate. In both experiments, N2 O production decreased when AMF hyphae were present before inorganic N addition. In the presence of AMF hyphae, N2 O production remained low following ammonium application, but increased in the nonAMF controls. By contrast, negligible N2 O was produced following nitrate application to either AMF treatment. Thus, the main N2 O source in this system appeared to be via nitrification, and the production of N2 O was reduced in the presence of AMF hyphae. It is hypothesized that AMF hyphae may be outcompeting slow-growing nitrifiers for ammonium. This has significant global implications for our understanding of soil N cycling pathways and N2 O production.


Asunto(s)
Micorrizas/metabolismo , Óxido Nitroso/metabolismo , Carbono/metabolismo , Hifa/metabolismo , Nitrógeno/metabolismo
15.
Soil Biol Biochem ; 117: 16-26, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31579255

RESUMEN

The 15N isotope pool dilution (IPD) technique is the only available method for measuring gross ammonium (NH4 +) production and consumption rates. Rapid consumption of the added 15N-NH4 + tracer is commonly observed, but the processes responsible for this consumption are not well understood. The primary objectives of this study were to determine the relative roles of biotic and abiotic processes in 15N-NH4 + sconsumption and to investigate the validity of one of the main assumptions of IPD experiments, i.e., that no reflux of the consumed 15N tracer occurs during the course of the experiments. We added a 15N-NH4 + tracer to live and sterile (autoclaved) soil using mineral topsoil from a beech forest and a grassland in Austria that differed in NH4 + concentrations and NH4 + consumption kinetics. We quantified both biotic tracer consumption (i.e. changes in the concentrations and 15N enrichments of NH4 +, dissolved organic N (DON), NO3 - and the microbial N pool) and abiotic tracer consumption (i.e., fixation by clay and/or humic substances). We achieved full recovery of the 15N tracer in both soils over the course of the 48 h incubation. For the forest soil, we found no rapid consumption of the 15N tracer, and the majority of tracer (78%) remained unconsumed at the end of the incubation period. In contrast, the grassland soil showed rapid 15N-NH4 + consumption immediately after tracer addition, which was largely due to both abiotic fixation (24%) and biotic processes, largely uptake by soil microbes (10%) and nitrification (13%). We found no evidence for reflux of 15N-NH4 + over the 48 h incubation period in either soil. Our study therefore shows that 15N tracer reflux during IPD experiments is negligible for incubation times of up to 48 h, even when rapid NH4 + consumption occurs. Such experiments are thus robust to the assumption that immobilized labeled N is not re-mobilized during the experimental period and does not impact calculations of gross N mineralization.

16.
Ecol Lett ; 20(8): 1043-1053, 2017 08.
Artículo en Inglés | MEDLINE | ID: mdl-28669138

RESUMEN

Ecosystem carbon (C) balance is hypothesised to be sensitive to the mycorrhizal strategies that plants use to acquire nutrients. To test this idea, we coupled an optimality-based plant nitrogen (N) acquisition model with a microbe-focused soil organic matter (SOM) model. The model accurately predicted rhizosphere processes and C-N dynamics across a gradient of stands varying in their relative abundance of arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) trees. When mycorrhizal dominance was switched - ECM trees dominating plots previously occupied by AM trees, and vice versa - legacy effects were apparent, with consequences for both C and N stocks in soil. Under elevated productivity, ECM trees enhanced decomposition more than AM trees via microbial priming of unprotected SOM. Collectively, our results show that ecosystem responses to global change may hinge on the balance between rhizosphere priming and SOM protection, and highlight the importance of dynamically linking plants and microbes in terrestrial biosphere models.


Asunto(s)
Micorrizas , Rizosfera , Nitrógeno , Suelo , Microbiología del Suelo , Árboles
17.
Extremophiles ; 21(3): 551-561, 2017 May.
Artículo en Inglés | MEDLINE | ID: mdl-28321615

RESUMEN

Haloferax alexandrinus Strain TM JCM 10717T = IFO 16590T is an extreme halophilic archaeon able to produce significant amounts of canthaxanthin. Its genome sequence has been analysed in this work using bioinformatics tools available at Expasy in order to look for genes encoding nitrate reductase-like proteins: respiratory nitrate reductase (Nar) and/or assimilatory nitrate reductase (Nas). The ability of the cells to reduce nitrate under aerobic conditions was tested. The enzyme in charge of nitrate reduction under aerobic conditions (Nas) has been purified and characterised. It is a monomeric enzyme (72 ± 1.8 kDa) that requires high salt concentration for stability and activity. The optimum pH value for activity was 9.5. Effectiveness of different substrates, electron donors, cofactors and inhibitors was also reported. High nitrite concentrations were detected within the culture media during aerobic/microaerobic cells growth. The main conclusion from the results is that this haloarchaeon reduces nitrate aerobically thanks to Nas and may induce denitrification under anaerobic/microaerobic conditions using nitrate as electron acceptor. The study sheds light on the role played by haloarchaea in the biogeochemical cycle of nitrogen, paying special attention to nitrate reduction processes. Besides, it provides useful information for future attempts on microecological and biotechnological implications of haloarchaeal nitrate reductases.


Asunto(s)
Proteínas Arqueales/metabolismo , Haloferax/enzimología , Nitrato Reductasas/metabolismo , Proteínas Arqueales/química , Estabilidad de Enzimas , Haloferax/metabolismo , Nitrato Reductasas/química , Nitratos/metabolismo , Oxidación-Reducción , Especificidad por Sustrato
18.
New Phytol ; 209(4): 1540-52, 2016 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26452175

RESUMEN

The increase in aridity predicted with climate change will have a negative impact on the multiple functions and services (multifunctionality) provided by dryland ecosystems worldwide. In these ecosystems, soil communities dominated by mosses, lichens and cyanobacteria (biocrusts) play a key role in supporting multifunctionality. However, whether biocrusts can buffer the negative impacts of aridity on important biogeochemical processes controlling carbon (C), nitrogen (N), and phosphorus (P) pools and fluxes remains largely unknown. Here, we conducted an empirical study, using samples from three continents (North America, Europe and Australia), to evaluate how the increase in aridity predicted by climate change will alter the capacity of biocrust-forming mosses to modulate multiple ecosystem processes related to C, N and P cycles. Compared with soil surfaces lacking biocrusts, biocrust-forming mosses enhanced multiple functions related to C, N and P cycling and storage in semiarid and arid, but not in humid and dry-subhumid, environments. Most importantly, we found that the relative positive effects of biocrust-forming mosses on multifunctionality compared with bare soil increased with increasing aridity. These results were mediated by plant cover and the positive effects exerted by biocrust-forming mosses on the abundance of soil bacteria and fungi. Our findings provide strong evidence that the maintenance of biocrusts is crucial to buffer negative effects of climate change on multifunctionality in global drylands.


Asunto(s)
Briófitas/fisiología , Clima Desértico , Ecosistema , Bacterias/metabolismo , Hongos/fisiología , Geografía , Modelos Biológicos , Estados Unidos
19.
J Environ Sci (China) ; 32: 54-61, 2015 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-26040731

RESUMEN

NOx emissions from biogenic sources in soils play a significant role in the gaseous loss of soil nitrogen and consequent changes in tropospheric chemistry. In order to investigate the characteristics of NOx fluxes and factors influencing these fluxes in degraded sandy grasslands in northern China, diurnal and spatial variations of NOx fluxes were measured in situ. A dynamic flux chamber method was used at eight sites with various vegetation coverages and soil types in the northern steppe of China in the summer season of 2010. Fluxes of NOx from soils with plant covers were generally higher than those in the corresponding bare vegetation-free soils, indicating that the canopy plays an important role in the exchange of NOx between soil and air. The fluxes of NOx increased in the daytime, and decreased during the nighttime, with peak emissions occurring between 12:00 and 14:00. The results of multiple linear regression analysis indicated that the diurnal variation of NOx fluxes was positively correlated with soil temperature (P<0.05) and negatively with soil moisture content (P<0.05). Based on measurement over a season, the overall variation in NOx flux was lower than that of soil nitrogen contents, suggesting that the gaseous loss of N from the grasslands of northern China was not a significant contributor to the high C/N in the northern steppe of China. The concentration of NOx emitted from soils in the region did not exceed the 1-hr National Ambient Air Quality Standard (0.25 mg/m3).


Asunto(s)
Monitoreo del Ambiente/métodos , Pradera , Óxidos de Nitrógeno/análisis , Suelo/química , Agricultura , China , Concentración de Iones de Hidrógeno , Cinética , Suelo/normas , Temperatura , Agua/análisis
20.
Sci Total Environ ; 927: 171840, 2024 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-38522544

RESUMEN

Molybdenum (Mo) is a critical micronutrient for nitrogen (N) metabolism in legumes, yet the impact of Mo on legume N metabolism in the context of natural coexistence with soil microorganisms remains poorly understood. This study investigated the dose-dependent effect of Mo on soil N biogeochemical cycling, N accumulation, and assimilation in alfalfa under conditions simulating the coexistence of arbuscular mycorrhizal fungi (AMF) and earthworms. The findings indicated that Mo exerted a hormetic effect on alfalfa N accumulation, facilitating it at low concentrations (below 29.98 mg/kg) and inhibiting it at higher levels. This inhibition was attributed to Mo-induced constraints on C supply for nitrogen fixation. Concurrently, AMF colonization enhanced C assimilation in Mo-treated alfalfas by promoting nutrients uptake, particularly Mg, which is crucial for chlorophyll synthesis. This effect was further amplified by earthworms, which improved AMF colonization (p < 0.05). In the soil N cycle, these organisms exerted opposing effects: AMF enhanced soil nitrification and earthworms reduced soil nitrate (NO3--N) reduction to jointly increase soil phyto-available N content (p < 0.05). Their combined action improved alfalfa N assimilation by restoring the protein synthesis pathway that is compromised by high Mo concentrations, specifically the activity of glutamine synthetase. These findings underscored the potential for soil microorganisms to mitigate N metabolic stress in legumes exposed to elevated Mo levels.


Asunto(s)
Medicago sativa , Molibdeno , Micorrizas , Nitrógeno , Oligoquetos , Micorrizas/fisiología , Oligoquetos/metabolismo , Animales , Nitrógeno/metabolismo , Molibdeno/metabolismo , Medicago sativa/metabolismo , Medicago sativa/microbiología , Microbiología del Suelo , Fabaceae , Suelo/química , Fijación del Nitrógeno
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA