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1.
Molecules ; 27(2)2022 Jan 16.
Artículo en Inglés | MEDLINE | ID: mdl-35056867

RESUMEN

The indigenous purplish red fruit, Cleistocalyx nervosum var. paniala (CN), is grown in northern Thailand. The aqueous extract of CN pulp is known to exhibit antioxidant and anticarcinogenic properties. To search for an antioxidant fraction separated from CN, various hydroalcoholic extractions were performed. The acidified ethanolic extract of CN obtained from 0.5% (v/v) citric acid in 80% (v/v) ethanol yielded greater polyphenol content and DPPH radical scavenging activity when compared with other hydroethanolic extracts. Cyanidin-3-glucoside is a major anthocyanin present in the acidified ethanolic extract of CN (AECN). At a dose of 5000 mg/kg bw, an anthocyanin-rich extract was found to be safe when given to rats without any acute toxicity. To examine the hepatoprotective properties of AECN, an overdose of acetaminophen (APAP) was induced in a rat model, while silymarin was used as a standard reference. The administration of AECN at a dose of 300 mg/kg bw for 28 days improved hepatocyte architecture and modulated serum alanine aminotransferase levels in APAP-induced rats. Furthermore, it significantly decreased serum and hepatic malondialdehyde levels but increased hepatic glutathione content, as well as glutathione peroxidase and UDP-glucuronosyltransferase activities. In conclusion, AECN may effectively reduce oxidative stress induced acute hepatotoxicity in overdose APAP-treated rats through the suppression of oxidative stress and the enhancement of the antioxidant system in rat livers.


Asunto(s)
Acetaminofén/efectos adversos , Antioxidantes/farmacología , Enfermedad Hepática Inducida por Sustancias y Drogas/prevención & control , Extractos Vegetales/farmacología , Sustancias Protectoras/farmacología , Syzygium/química , Alanina Transaminasa/sangre , Animales , Antocianinas , Antioxidantes/uso terapéutico , Antioxidantes/toxicidad , Enfermedad Hepática Inducida por Sustancias y Drogas/sangre , Enfermedad Hepática Inducida por Sustancias y Drogas/patología , Modelos Animales de Enfermedad , Enzimas/efectos de los fármacos , Enzimas/metabolismo , Etanol/química , Femenino , Frutas/química , Glutatión/metabolismo , Glutatión Peroxidasa/metabolismo , Hígado/efectos de los fármacos , Hígado/enzimología , Malondialdehído/metabolismo , Estrés Oxidativo/efectos de los fármacos , Extractos Vegetales/uso terapéutico , Extractos Vegetales/toxicidad , Polifenoles/análisis , Polifenoles/farmacología , Polifenoles/uso terapéutico , Sustancias Protectoras/uso terapéutico , Sustancias Protectoras/toxicidad , Ratas Wistar , Silimarina/farmacología , Silimarina/uso terapéutico , Tailandia
2.
Pharmacol Res ; 169: 105660, 2021 07.
Artículo en Inglés | MEDLINE | ID: mdl-33971270

RESUMEN

Dysregulation and mutations of protein kinases play causal roles in many diseases including cancer. The KLIFS (kinase-ligand interaction fingerprint and structure) catalog includes 85 ligand binding-site residues occurring in both the small and large protein kinase lobes. Except for allosteric inhibitors, all FDA-approved drug-target enzyme complexes display hydrophobic interactions involving catalytic spine residue-6 (KLIFS-77), catalytic spine residue-7 (KLIFS-11), and catalytic spine residue-8 (KLIFS-15) within the small lobe and residues within the hinge-linker region (KLIFS-46-52). Except for allosteric antagonists, the approved drugs form hydrogen bonds with the third hinge residue (KLIFS-48) of their target. Most of the approved drugs, including the allosteric inhibitors, interact with the small lobe gatekeeper residue (KLIFS-45). The type IIA inhibitors have the most hydrophobic interactions with their target enzymes. These include interactions with KLIFS-27/31/35/61/66 residues of the back pocket within both the small and large lobes. There is also interaction with KLIFS-68 (regulatory spine residue-1), the conserved histidine of the catalytic loop that is found in the back pocket of type II antagonists, but within the front pocket of the other types of inhibitors. Owing to the participation of protein kinase signaling cascades in a wide variety of physiological and pathological processes, one can foresee the increasing use of targeted inhibitors both as primary and secondary treatments for many illnesses. Further studies of protein kinase signal transduction pathways promise to yield new and actionable information that will serve as a basis for fundamental and applied biomedical breakthroughs.


Asunto(s)
Interacciones Hidrofóbicas e Hidrofílicas , Inhibidores de Proteínas Quinasas/química , Sitios de Unión , Enzimas/química , Enzimas/efectos de los fármacos , Humanos , Interacciones Hidrofóbicas e Hidrofílicas/efectos de los fármacos , Inhibidores de Proteínas Quinasas/farmacología , Relación Estructura-Actividad
3.
Br J Nutr ; 125(3): 251-259, 2021 02 14.
Artículo en Inglés | MEDLINE | ID: mdl-32718368

RESUMEN

Coated copper sulphate (CCS) could be used as a Cu supplement in cows. To investigate the influences of copper sulphate (CS) and CCS on milk performance, nutrient digestion and rumen fermentation, fifty Holstein dairy cows were arranged in a randomised block design to five groups: control, CS addition (7·5 mg Cu/kg DM from CS) or CCS addition (5, 7·5 and 10 mg Cu/kg DM from CCS, respectively). When comparing Cu source at equal inclusion rates (7·5 mg/kg DM), cows receiving CCS addition had higher yields of fat-corrected milk, milk fat and protein; digestibility of DM, organic matter (OM) and neutral-detergent fibre (NDF); ruminal total volatile fatty acid (VFA) concentration; activities of carboxymethyl cellulase, cellobiase, pectinase and α-amylase; populations of Ruminococcus albus, Ruminococcus flavefaciens and Fibrobacter succinogenes; and liver Cu content than cows receiving CS addition. Increasing CCS addition, DM intake was unchanged, yields of milk, milk fat and protein; feed efficiency; digestibility of DM, OM, NDF and acid-detergent fibre; ruminal total VFA concentration; acetate:propionate ratio; activity of cellulolytic enzyme; populations of total bacteria, protozoa and dominant cellulolytic bacteria; and concentrations of Cu in serum and liver increased linearly, but ruminal propionate percentage, ammonia-N concentration, α-amylase activity and populations of Prevotella ruminicola and Ruminobacter amylophilus decreased linearly. The results indicated that supplement of CS could be substituted with CCS and addition of CCS improved milk performance and nutrient digestion in dairy cows.


Asunto(s)
Alimentación Animal , Fenómenos Fisiológicos Nutricionales de los Animales/efectos de los fármacos , Sulfato de Cobre/administración & dosificación , Suplementos Dietéticos , Animales , Bovinos , Digestión/efectos de los fármacos , Enzimas/efectos de los fármacos , Femenino , Fermentación/efectos de los fármacos , Lactancia/efectos de los fármacos , Hígado/metabolismo , Microbiota/efectos de los fármacos , Nutrientes/metabolismo , Rumen/metabolismo
4.
Molecules ; 26(19)2021 Oct 07.
Artículo en Inglés | MEDLINE | ID: mdl-34641604

RESUMEN

Heavy metals enter the human body through the gastrointestinal tract, skin, or via inhalation. Toxic metals have proven to be a major threat to human health, mostly because of their ability to cause membrane and DNA damage, and to perturb protein function and enzyme activity. These metals disturb native proteins' functions by binding to free thiols or other functional groups, catalyzing the oxidation of amino acid side chains, perturbing protein folding, and/or displacing essential metal ions in enzymes. The review shows the physiological and biochemical effects of selected toxic metals interactions with proteins and enzymes. As environmental contamination by heavy metals is one of the most significant global problems, some detoxification strategies are also mentioned.


Asunto(s)
Biodegradación Ambiental , Exposición a Riesgos Ambientales , Metales Pesados/toxicidad , Unión Proteica/efectos de los fármacos , Sitios de Unión , Cosméticos/toxicidad , Daño del ADN , Contaminantes Ambientales/toxicidad , Enzimas/efectos de los fármacos , Alimentos/toxicidad , Humanos , Pliegue de Proteína/efectos de los fármacos
5.
Biochemistry ; 59(38): 3517-3522, 2020 09 29.
Artículo en Inglés | MEDLINE | ID: mdl-32931253

RESUMEN

We define paracatalysis as the acceleration of a reaction that appears abnormal or nonphysiological. With the high specificity of enzymes, side reactivity of this kind is typically negligible. However, enzyme paracatalysis can be amplified to levels that are biologically significant through interactions with a special class of small molecule "antagonist", here termed a paracatalytic inducer. Compounds with this unusual mode of action tend to be natural products, identified by chance through phenotypic screens. In this Perspective, we suggest two general types of paracatalytic inducer. The first type promotes substrate ambiguity, where the enzyme's ground state selectivity is compromised, enabling the transformation of non-native substrates. The second type involves transition state ambiguity, where the paracatalytic inducer changes the enzyme's interactions with the activated substrate, giving rise to non-native bond making. Although they are unusual, small molecules that induce paracatalysis have established value as hypothesis-generating probes and a few substances, i.e., aspirin and the aminoglycosides, have proven to be translatable as medicines.


Asunto(s)
Biocatálisis/efectos de los fármacos , Activadores de Enzimas/farmacología , Inhibidores Enzimáticos/farmacología , Enzimas/efectos de los fármacos , Especificidad por Sustrato/efectos de los fármacos
6.
Crit Rev Food Sci Nutr ; 59(5): 794-811, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30799633

RESUMEN

Food endogenous enzymes have impacts on color, texture and flavor of foods during food processing or preservation. Cold plasma is a novel non-thermal food processing technology, which has been extensively studied for contamination elimination and shelf life extension of foods. Particularly, much work has been reported about the effects of cold plasma on enzyme activities and alterations about enzymes conformational structures. It is thus necessary to understand the mechanisms of actions and applications of cold plasma technology in the conformation of food endogenous enzymes. This review focuses on the applications of cold plasma for the inactivation of various endogenous enzymes, including peroxidase, polyphenol oxidase, lysozyme, α-chymotrypsin, alkaline phosphatase, and pectin methylesterase. The activations of several enzymes, such as superoxide dismutase, catalase, and lipase, by cold plasma are also discussed. In addition, this review highlights the transformation of conformational structures including primary and spatial structures induced by chemical reactive species during cold plasma treatments, such as reactive oxygen species and reactive nitrogen species, especially, active sites consisting of prosthetic group and specific amino acids are demonstrated. Both extrinsic and intrinsic factors affecting cold plasma treatments are also described. In general, cold plasma exhibits the ability to activate or inactivate enzymes activities with affecting the conformational structures of enzyme. Further studies should be focused on exploration at molecular level for providing more insight on the interaction mechanism. In addition, equipment and process parameters of cold plasma operation for different fresh food products should be optimized for achieving appropriate control on enzyme variation and obtaining maximum efficiency.


Asunto(s)
Enzimas/efectos de los fármacos , Manipulación de Alimentos/métodos , Alimentos , Gases em Plasma/farmacología , Conformación Proteica/efectos de los fármacos , Catalasa/química , Catalasa/metabolismo , Catecol Oxidasa/antagonistas & inhibidores , Activación Enzimática/efectos de los fármacos , Enzimas/química , Enzimas/metabolismo , Lipasa/metabolismo , Inhibidores de la Lipooxigenasa , Lipooxigenasas , Valor Nutritivo/efectos de los fármacos , Peroxidasa/antagonistas & inhibidores , Plantas Comestibles/enzimología , Superóxido Dismutasa/química , Superóxido Dismutasa/metabolismo
7.
J Inherit Metab Dis ; 42(6): 1088-1096, 2019 11.
Artículo en Inglés | MEDLINE | ID: mdl-31177541

RESUMEN

Abundance of urea cycle enzymes in the liver is regulated by dietary protein intake. Although urea cycle enzyme levels rise in response to a high-protein (HP) diet, signaling networks that sense dietary protein intake and trigger changes in expression of urea cycle genes have not been identified. The aim of this study was to identify signaling pathway(s) that respond to changes in protein intake and regulate expression of urea cycle genes in mice and human hepatocytes. Mice were adapted to either HP or low-protein diets followed by isolation of liver protein and mRNA and integrated analysis of the proteomic and transcriptomic data. HP diet led to increased expression of mRNA and enzymes in amino acid degradation pathways and decreased expression of mRNA and enzymes in carbohydrate and fat metabolism, which implicated adenosine monophosphate-activated protein kinase (AMPK) as a possible regulator. Primary human hepatocytes, treated with 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) an activator of AMPK, were used to test whether AMPK regulates expression of urea cycle genes. The abundance of carbamoylphosphate synthetase 1 and ornithine transcarbamylase mRNA increased in hepatocytes treated with AICAR, which supports a role for AMPK signaling in regulation of the urea cycle. Because AMPK is either a target of drugs used to treat type-2 diabetes, these drugs might increase the expression of urea cycle enzymes in patients with partial urea cycle disorders, which could be the basis of a new therapeutic approach.


Asunto(s)
Proteínas Quinasas Activadas por AMP/metabolismo , Proteínas en la Dieta/farmacología , Enzimas/genética , Urea/metabolismo , Aminoimidazol Carboxamida/análogos & derivados , Aminoimidazol Carboxamida/farmacología , Animales , Células Cultivadas , Proteínas en la Dieta/administración & dosificación , Enzimas/efectos de los fármacos , Enzimas/metabolismo , Regulación Enzimológica de la Expresión Génica/efectos de los fármacos , Hepatocitos/efectos de los fármacos , Hepatocitos/metabolismo , Humanos , Masculino , Ratones , Ratones Endogámicos C57BL , Ribonucleótidos/farmacología , Transducción de Señal/efectos de los fármacos , Transducción de Señal/genética
8.
Arch Toxicol ; 93(2): 519-532, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30426164

RESUMEN

Drug-induced liver injury (DILI) constitutes one of the most frequent reasons of restricted-use warnings as well as withdrawals of drugs in postmarketing and poses an important concern for the pharmaceutical industry. The current hepatic in vivo and in vitro models for DILI detection have shown clear limitations, mainly for studies of long-term hepatotoxicity. For this reason, we here evaluated the potential of using Upcytes human hepatocytes (UHH) for repeated-dose long-term exposure to drugs. The UHH were incubated with 15 toxic and non-toxic compounds for up to 21 days using a repeated-dose approach, and, in addition to conventional examination of effects on viability, the mechanisms implicated in cell toxicity were also assessed by means of high-content screening. The UHH maintained the expression and activity levels of drug-metabolizing enzymes for up to 21 days of culture and became more sensitive to the toxic compounds after extended exposures, showing inter-donor differences which would reflect variability among the population. The assay also allowed to detect the main mechanisms implicated in the toxicity of each drug as well as identifying special susceptibilities depending on the donor. UHH can be used for a long-term repeated detection of DILI at clinically relevant concentrations and also offers key mechanistic features of drug-induced hepatotoxicity. This system is therefore a promising tool in preclinical testing of human relevance that could help to reduce and/or replace animal testing for drug adverse effects.


Asunto(s)
Técnicas de Cultivo de Célula/métodos , Enfermedad Hepática Inducida por Sustancias y Drogas/patología , Hepatocitos/efectos de los fármacos , Pruebas de Toxicidad/métodos , Adulto , Enfermedad Hepática Inducida por Sustancias y Drogas/etiología , Niño , Relación Dosis-Respuesta a Droga , Enzimas/efectos de los fármacos , Enzimas/genética , Enzimas/metabolismo , Femenino , Células Hep G2 , Hepatocitos/citología , Ensayos Analíticos de Alto Rendimiento/métodos , Humanos , Inactivación Metabólica , Persona de Mediana Edad , Factores de Tiempo
9.
Biochemistry ; 56(44): 5849-5865, 2017 11 07.
Artículo en Inglés | MEDLINE | ID: mdl-28977745

RESUMEN

The eight enzymes responsible for the biosynthesis of the three branched-chain amino acids (l-isoleucine, l-leucine, and l-valine) were identified decades ago using classical genetic approaches based on amino acid auxotrophy. This review will highlight the recent progress in the determination of the three-dimensional structures of these enzymes, their chemical mechanisms, and insights into their suitability as targets for the development of antibacterial agents. Given the enormous rise in bacterial drug resistance to every major class of antibacterial compound, there is a clear and present need for the identification of new antibacterial compounds with nonoverlapping targets to currently used antibacterials that target cell wall, protein, mRNA, and DNA synthesis.


Asunto(s)
Aminoácidos de Cadena Ramificada/biosíntesis , Antibacterianos/farmacología , Enzimas/efectos de los fármacos , Antibacterianos/química , Enzimas/química , Conformación Molecular
10.
Biopharm Drug Dispos ; 38(9): 517-525, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28865089

RESUMEN

Enzalutamide is a new drug against castration-resistant prostate cancer. Recent data indicate profound induction of drug metabolizing enzymes (e.g. cytochrome P450 isoenzyme (CYP) 3A4) but comprehensive in vitro data on other CYP enzymes, drug conjugating enzymes or drug transporters is scarce. Moreover, the mechanisms of induction are poorly investigated and the effects of the active metabolite N-desmethyl enzalutamide are unknown. Using LS180 cells as an induction model and quantitative real-time reverse transcription polymerase chain reaction, our study demonstrated a concentration-dependent induction of CYP1A1, CYP1A2, CYP3A5, CYP3A4, UGT1A3, UGT1A9, ABCB1, ABCC2 and ABCG2 mRNA. Induction of CYP3A4 and ABCB1 was confirmed by Western blot analysis and is likely mediated by activation of the nuclear receptor pregnane x receptor, elucidated by a luciferase-based reporter gene assay. Enzalutamide's main active metabolite N-desmethyl enzalutamide exhibited only weak induction properties. mRNA expression of UGT2B7 was suppressed by enzalutamide and its metabolite. Both compounds are apparently not transported by P-glycoprotein (P-gp) or breast cancer resistance protein (BCRP). N-desmethyl enzalutamide more potently inhibited important drug transporters (P-gp, BCRP, OATPs) than enzalutamide. Taken together, the pharmacokinetics of concurrently administered drugs is likely altered during enzalutamide therapy. Levels of metabolically (mainly CYP3A4) eliminated drugs are expected to be decreased, whereas the abundance of compounds with solely transporter-determined pharmacokinetics (P-gp, OATPs) is likely enhanced.


Asunto(s)
Antineoplásicos/farmacología , Enzimas/efectos de los fármacos , Proteínas de Transporte de Membrana/efectos de los fármacos , Feniltiohidantoína/análogos & derivados , Antineoplásicos/administración & dosificación , Antineoplásicos/farmacocinética , Benzamidas , Transporte Biológico , Línea Celular , Relación Dosis-Respuesta a Droga , Interacciones Farmacológicas , Inducción Enzimática/efectos de los fármacos , Enzimas/genética , Enzimas/metabolismo , Humanos , Proteínas de Transporte de Membrana/genética , Proteínas de Transporte de Membrana/metabolismo , Proteína 2 Asociada a Resistencia a Múltiples Medicamentos , Nitrilos , Feniltiohidantoína/administración & dosificación , Feniltiohidantoína/farmacocinética , Feniltiohidantoína/farmacología , ARN Mensajero/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
11.
Molecules ; 22(6)2017 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-28632186

RESUMEN

Over the past few years Penicillium brasilianum has been isolated from many different environmental sources as soil isolates, plant endophytes and onion pathogen. All investigated strains share a great ability to produce bioactive secondary metabolites. Different authors have investigated this great capability and here we summarize the metabolic potential and the biological activities related to P. brasilianum's metabolites with diverse structures. They include secondary metabolites of an alkaloid nature, i.e., 2,5-diketopiperazines, cyclodepsipeptides, meroterpenoids and polyketides. Penicillium brasilianum is also described as a great source of enzymes with biotechnological application potential, which is also highlighted in this review. Additionally, this review will focus on several aspects of Penicillium brasilianum and interesting genomic insights.


Asunto(s)
Biotecnología/métodos , Metabolismo Secundario , Antiinfecciosos/aislamiento & purificación , Antiinfecciosos/farmacología , Bacterias/efectos de los fármacos , Depsipéptidos/metabolismo , Dicetopiperazinas/metabolismo , Descubrimiento de Drogas , Endófitos/metabolismo , Enzimas/efectos de los fármacos , Penicillium/metabolismo , Policétidos/metabolismo
12.
Bull Environ Contam Toxicol ; 98(3): 439-445, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-27704186

RESUMEN

Pretilachlor treatments, namely, recommended dose at 600 g a.i. ha-1 (RD), double the recommended dose at 1200 g a.i. ha-1 (2RD), ten times of the recommended dose at 6000 g a.i. ha-1 (10RD) along with control, were used to study the effects of pretilachlor on soil enzymes in tropical rice soil. Pretilachlor, at recommended dose completely dissipated 30 days after herbicide application. Twenty days after herbicide application, the dehydrogenase activity was inhibited up to 27 %, 28 % and 40 % of initial values of RD, 2RD and 10RD treatments, respectively. Increase in fluorescein diacetate hydrolase activity was observed during the first 25 days post herbicide application up to 29 %, 36 % and 10 % of initial values of RD, 2RD and 10RD treatments, respectively. ß-Glucosidase activity in the experiment did not provide a specific trend. In general, urease and acid phosphatase activities were not influenced by pretilachlor application. There were significant differences in alkaline phosphatase activities among the treatments until 25 days after herbicide application. Hence, pretilachlor may cause short term transitory changes in soil enzyme parameters. However, it has negative impact on soil enzymes at very high dose.


Asunto(s)
Acetanilidas/toxicidad , Enzimas/efectos de los fármacos , Suelo/química , Acetanilidas/análisis , Relación Dosis-Respuesta a Droga , Enzimas/metabolismo , Microbiología del Suelo , Factores de Tiempo
13.
J Environ Sci Health B ; 51(5): 261-70, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26828860

RESUMEN

This study was undertaken to evaluate zinc's influence on the resistance of organotrophic bacteria, actinomyces, fungi, dehydrogenases, catalase and urease. The experiment was conducted in a greenhouse of the University of Warmia and Mazury (UWM) in Olsztyn, Poland. Plastic pots were filled with 3 kg of sandy loam with pHKCl - 7.0 each. The experimental variables were: zinc applied to soil at six doses: 100, 300, 600, 1,200, 2,400 and 4,800 mg of Zn(2+) kg(-1) in the form of ZnCl2 (zinc chloride), and species of plant: oat (Avena sativa L.) cv. Chwat and white mustard (Sinapis alba) cv. Rota. Soil without the addition of zinc served as the control. During the growing season, soil samples were subjected to microbiological analyses on experimental days 25 and 50 to determine the abundance of organotrophic bacteria, actinomyces and fungi, and the activity of dehydrogenases, catalase and urease, which provided a basis for determining the soil resistance index (RS). The physicochemical properties of soil were determined after harvest. The results of this study indicate that excessive concentrations of zinc have an adverse impact on microbial growth and the activity of soil enzymes. The resistance of organotrophic bacteria, actinomyces, fungi, dehydrogenases, catalase and urease decreased with an increase in the degree of soil contamination with zinc. Dehydrogenases were most sensitive and urease was least sensitive to soil contamination with zinc. Zinc also exerted an adverse influence on the physicochemical properties of soil and plant development. The growth of oat and white mustard plants was almost completely inhibited in response to the highest zinc doses of 2,400 and 4,800 mg Zn(2+) kg(-1).


Asunto(s)
Bacterias/efectos de los fármacos , Enzimas/efectos de los fármacos , Hongos/efectos de los fármacos , Contaminantes del Suelo/análisis , Suelo/química , Zinc/análisis , Polonia , Microbiología del Suelo
14.
Nucleic Acids Res ; 41(Database issue): D1083-8, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23087376

RESUMEN

The International Union of Basic and Clinical Pharmacology (IUPHAR) database, IUPHAR-DB (http://www.iuphar-db.org) is an open access, online database providing detailed, expert-driven annotation of the primary literature on human and rodent receptors and other drug targets, together with the substances that act on them. The present release includes information on the products of 646 genes from four major protein classes (G protein-coupled receptors, nuclear hormone receptors, voltage- and ligand-gated ion channels) and ∼3180 bioactive molecules (endogenous ligands, licensed drugs and key pharmacological tools) that interact with them. We have described previously the classification and curation of data for small molecule ligands in the database; in this update we have annotated 366 endogenous peptide ligands with their amino acid sequences, post-translational modifications, links to precursor genes, species differences and relationships with other molecules in the database (e.g. those derived from the same precursor). We have also matched targets with their endogenous ligands (peptides and small molecules), with particular attention paid to identifying bioactive peptide ligands generated by post-translational modification of precursor proteins. Other improvements to the database include enhanced information on the clinical relevance of targets and ligands in the database, more extensive links to other databases and a pilot project for the curation of enzymes as drug targets.


Asunto(s)
Bases de Datos de Compuestos Químicos , Canales Iónicos/efectos de los fármacos , Receptores Citoplasmáticos y Nucleares/efectos de los fármacos , Receptores Acoplados a Proteínas G/efectos de los fármacos , Animales , Inhibidores Enzimáticos/química , Enzimas/química , Enzimas/efectos de los fármacos , Enzimas/genética , Humanos , Internet , Canales Iónicos/química , Canales Iónicos/genética , Lanosterol/biosíntesis , Ligandos , Ratones , Anotación de Secuencia Molecular , Péptidos/química , Péptidos/genética , Péptidos/metabolismo , Preparaciones Farmacéuticas/química , Farmacología , Ratas , Receptores Citoplasmáticos y Nucleares/química , Receptores Citoplasmáticos y Nucleares/genética , Receptores Acoplados a Proteínas G/química , Receptores Acoplados a Proteínas G/genética
15.
J Am Chem Soc ; 136(6): 2220-3, 2014 Feb 12.
Artículo en Inglés | MEDLINE | ID: mdl-24447098

RESUMEN

An amphiphilic nanoassembly was designed to respond to the concurrent presence of a protein and an enzyme. We present herein a system, where in the presence of these two stimuli supramolecular disassembly and molecular release occur. This molecular release arises in the form a fluorescence response that has been shown to be specific. We also show that this system can be modified to respond only if light stimulus is also present in addition to the protein and the enzyme. Demonstration of such supramolecular disassembly principles could have broad implications in a variety of biological applications.


Asunto(s)
Enzimas/química , Modelos Biológicos , Proteínas/química , Sitios de Unión , Cumarinas/química , Cumarinas/farmacología , Enzimas/efectos de los fármacos , Indicadores y Reactivos/farmacología , Estructura Molecular , Transporte de Proteínas , Especificidad por Sustrato
16.
Bioinformatics ; 28(18): 2304-10, 2012 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-22730431

RESUMEN

MOTIVATION: Identifying interactions between drug compounds and target proteins has a great practical importance in the drug discovery process for known diseases. Existing databases contain very few experimentally validated drug-target interactions and formulating successful computational methods for predicting interactions remains challenging. RESULTS: In this study, we consider four different drug-target interaction networks from humans involving enzymes, ion channels, G-protein-coupled receptors and nuclear receptors. We then propose a novel Bayesian formulation that combines dimensionality reduction, matrix factorization and binary classification for predicting drug-target interaction networks using only chemical similarity between drug compounds and genomic similarity between target proteins. The novelty of our approach comes from the joint Bayesian formulation of projecting drug compounds and target proteins into a unified subspace using the similarities and estimating the interaction network in that subspace. We propose using a variational approximation in order to obtain an efficient inference scheme and give its detailed derivations. Finally, we demonstrate the performance of our proposed method in three different scenarios: (i) exploratory data analysis using low-dimensional projections, (ii) predicting interactions for the out-of-sample drug compounds and (iii) predicting unknown interactions of the given network. AVAILABILITY: Software and Supplementary Material are available at http://users.ics.aalto.fi/gonen/kbmf2k. CONTACT: mehmet.gonen@aalto.fi SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.


Asunto(s)
Algoritmos , Descubrimiento de Drogas , Proteínas/efectos de los fármacos , Teorema de Bayes , Enzimas/efectos de los fármacos , Genómica , Humanos , Canales Iónicos/efectos de los fármacos , Preparaciones Farmacéuticas/química , Proteínas/química , Proteínas/genética , Receptores Citoplasmáticos y Nucleares/efectos de los fármacos , Receptores Acoplados a Proteínas G/efectos de los fármacos , Análisis de Secuencia de Proteína
17.
Diabetes Obes Metab ; 15(12): 1128-35, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23782571

RESUMEN

AIMS: To investigate the mechanism of the metabolic disturbance induced by the atypical antipsychotic olanzapine, we examined whether adenosine 5'-monophosphate-activated protein kinase (AMPK) in the hypothalamus and hepatic glucose production are involved in the effect of olanzapine. METHODS: Male 6-week-old ICR mice were used. Blood glucose levels were determined by the glucose oxidase method. The mRNA levels of gluconeogenic or glycolytic enzymes were measured by reverse transcription polymerase chain reaction (RT-PCR). AMPK expression was measured by Western blotting. RESULTS: Systemic injection of olanzapine increased blood glucose levels in both unfasted and fasted mice. However, the increase in fasted mice was less than that in unfasted mice. Central administration of olanzapine also increased the blood glucose levels in unfasted mice, but not in fasted mice. In a pyruvate tolerance test, olanzapine significantly increased blood glucose levels. In addition, olanzapine increased the mRNA levels of glucose-6-phosphatase (G6Pase), a gluconeogenic enzyme, in the liver. Furthermore, olanzapine increased phosphorylated AMPK in the hypothalamus of unfasted mice, and olanzapine-induced hyperglycaemia was inhibited by the AMPK inhibitor compound C. Central administration of the AMPK activator AICAR significantly increased G6Pase mRNA levels in the liver and blood glucose levels. Moreover, both olanzapine- and AICAR-induced hyperglycaemia were attenuated by the ß-adrenergic receptor antagonist propranolol, suggesting that olanzapine and AICAR induce hepatic glucose production through the sympathetic nervous system. CONCLUSIONS: Our results indicate that olanzapine activates AMPK in the hypothalamus, which increases hepatic glucose production via the sympathetic nervous system.


Asunto(s)
Proteínas Quinasas Activadas por AMP/fisiología , Antipsicóticos/farmacología , Benzodiazepinas/farmacología , Glucemia/biosíntesis , Hipotálamo/efectos de los fármacos , Hígado/metabolismo , Antagonistas Adrenérgicos beta/farmacología , Animales , Enzimas/efectos de los fármacos , Homeostasis/efectos de los fármacos , Hipotálamo/metabolismo , Hígado/efectos de los fármacos , Masculino , Ratones , Olanzapina , Fosforilación , Propranolol/farmacología , Inhibidores de Proteínas Quinasas/farmacología , Ácido Pirúvico/metabolismo , ARN Mensajero/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
18.
Drug Chem Toxicol ; 36(3): 296-305, 2013 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-23025823

RESUMEN

Magnetic iron oxide nanoparticles with appropriate surface chemistry have been widely used with potential new applications in biomedical industry. Therefore, the aim of this study was to assess the size-, dose-, and time-dependent effects, after acute oral exposure to iron oxide-30 NP (Fe(2)O(3)-30), on various biochemical enzyme activities of clinical significances in a female Wistar rat model. Rats were exposed to three different doses (500, 1,000, and 2,000 mg/kg) of Fe(2)O(3)-30 and Fe(2)O(3)-Bulk along with control. Fe(2)O(3)-30 had no effect on growth, behavior, and nutritional performance of animals. Fe(2)O(3)-30 caused significant inhibition of acetylcholinestrase in red blood cells as well as in brains of treated rats. Further, more than 50% inhibition of total, Na(+)-K(+), Mg(2+), and Ca(2+)-ATPases activities, as observed in brains of exposed female rats, may be the result of disturbances in cellular physiology and the iono-regulatory process. Activation of the hepatotoxicity marker enzymes, aspartate aminotransferase and alanine aminotransferase, was recorded in serum and liver, whereas inhibition was observed in kidney. Similarly, enhancement of lactate dehydrogenase activity was observed in serum and liver; however, a decrease in enzyme levels was observed in kidneys of Fe(2)O(3)-30-treated rats. On the other hand, Fe(2)O(3)-Bulk did not depict any significant changes in these biochemical parameters, and alterations were near to control. Therefore, this study suggests that exposure to nanosize particles at acute doses may cause adverse changes in animal biochemical profiles. The use of the rat model signifies the correlation with the human system.


Asunto(s)
Activadores de Enzimas/toxicidad , Inhibidores Enzimáticos/toxicidad , Enzimas/efectos de los fármacos , Compuestos Férricos/toxicidad , Nanopartículas del Metal/toxicidad , Acetilcolinesterasa/efectos de los fármacos , Acetilcolinesterasa/metabolismo , Adenosina Trifosfatasas/antagonistas & inhibidores , Adenosina Trifosfatasas/efectos de los fármacos , Administración Oral , Animales , Conducta Animal/efectos de los fármacos , Biomarcadores/metabolismo , Tamaño Corporal/efectos de los fármacos , Encéfalo/efectos de los fármacos , Encéfalo/enzimología , Relación Dosis-Respuesta a Droga , Ingestión de Alimentos/efectos de los fármacos , Enzimas/metabolismo , Eritrocitos/efectos de los fármacos , Eritrocitos/enzimología , Femenino , Compuestos Férricos/química , Riñón/efectos de los fármacos , Riñón/enzimología , Riñón/patología , L-Lactato Deshidrogenasa/efectos de los fármacos , L-Lactato Deshidrogenasa/metabolismo , Hígado/efectos de los fármacos , Hígado/patología , Pruebas de Función Hepática , Necrosis/inducido químicamente , Tamaño de la Partícula , Ratas , Ratas Wistar , Pruebas de Toxicidad Aguda
19.
Epilepsia ; 53(3): 512-20, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22242805

RESUMEN

PURPOSE: Given serious concerns over the adverse effects of enzyme induction, modern nonenzyme-inducing antiepileptic drugs (AEDs) may be preferable, provided they have similar efficacy as enzyme-inducing AEDs. This is currently unclear. METHODS: Therefore, we performed a meta-analysis of the evidence to determine the placebo-corrected efficacy of adjunctive treatment with modern nonenzyme-inducing AEDs versus modern enzyme-inducing AEDs that are on the market for refractory focal epilepsy. KEY FINDINGS: Of 322 potentially eligible articles reviewed in full text, 129 (40%) fulfilled eligibility criteria. After excluding 92 publications, 37 studies dealing with a total of 9,860 patients with refractory focal epilepsy form the basis for the evidence. The overall weighted pooled-risk ratio (RR) in favor of enzyme-inducing AEDs over placebo was 2.37 (95% confidence interval [CI] 1.77-3.18, p < 0.001) for at least 50% seizure reduction and 4.45 (2.26-8.76, p < 0.001) for seizure freedom. The corresponding weighted pooled RR in favor of nonenzyme-inducing AEDs over placebo was 2.28 (95% CI 2.03-2.57, p < 0.001) for at least 50% seizure reduction and 3.23 (95% CI 2.23-4.67, p < 0.001) for seizure freedom. In a meta-regression analysis in the same sample with at least 50% seizure reduction as outcome, the ratio of RRs for enzyme-inducing AEDs (eight studies) versus nonenzyme-inducing AEDs (29 studies) was 1.01 (95% CI 0.77-1.34, p = 0.92)). Similarly, the ratio of RRs for a seizure-free outcome for enzyme-inducing AEDs (six studies) versus nonenzyme-inducing AEDs (19 studies) was 1.38 (95% CI 0.60-3.16, p = 0.43). SIGNIFICANCE: Although the presence of moderate heterogeneity may reduce the validity of the results and limit generalizations from the findings, we conclude that the efficacy of adjunctive treatment with modern nonenzyme-inducing AEDs is similar to that of enzyme-inducing AEDs. Given the negative consequences of enzyme induction, our data suggest that nonenzyme-inducing AEDs may be useful alternatives to enzyme-inducing AEDs for treatment of refractory focal epilepsy.


Asunto(s)
Anticonvulsivantes/efectos adversos , Ensayos Clínicos como Asunto , Epilepsias Parciales/tratamiento farmacológico , Anticonvulsivantes/administración & dosificación , Ensayos Clínicos como Asunto/métodos , Ensayos Clínicos como Asunto/tendencias , Resistencia a Medicamentos/fisiología , Enzimas/efectos de los fármacos , Enzimas/fisiología , Epilepsias Parciales/enzimología , Humanos , Oportunidad Relativa , Efecto Placebo , Resultado del Tratamiento
20.
J Toxicol Environ Health B Crit Rev ; 14(5-7): 449-72, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21790321

RESUMEN

Endocrine-disrupting chemicals (EDC) are molecules that interfere with endocrine signaling pathways and produce adverse consequences on animal and human physiology, such as infertility or behavioral alterations. Some EDC act through binding to androgen or/and estrogen receptors primarily operating through a genomic mechanism regulating gene expression. This mechanism of action may induce profound developmental adverse effects, and the major targets of the EDC action are the gene products, i.e., mRNAs inducing the synthesis of various peptidic molecules, which include neuropeptides and enzymes related to neurotransmitters syntheses. Available immunohistochemical data on some of the systems that are affected by EDC in lower and higher vertebrates are detailed in this review.


Asunto(s)
Disruptores Endocrinos/toxicidad , Exposición a Riesgos Ambientales/efectos adversos , Contaminantes Ambientales/toxicidad , Animales , Enzimas/efectos de los fármacos , Enzimas/metabolismo , Regulación de la Expresión Génica/efectos de los fármacos , Humanos , Neuropéptidos/efectos de los fármacos , Neuropéptidos/metabolismo , Unión Proteica , ARN Mensajero/metabolismo , Receptores Androgénicos/metabolismo , Receptores de Estrógenos/metabolismo
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