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1.
J Integr Plant Biol ; 58(6): 540-8, 2016 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-26220807

RESUMEN

Due to the remarkable adaptability to various environments, rice varieties with diverse flowering times have been domesticated or improved from Oryza rufipogon. Detailed knowledge of the genetic factors controlling flowering time will facilitate understanding the adaptation mechanism in cultivated rice and enable breeders to design appropriate genotypes for distinct preferences. In this study, four genes (Hd1, DTH8, Ghd7 and OsPRR37) in a rice long-day suppression pathway were collected and sequenced in 154, 74, 69 and 62 varieties of cultivated rice (Oryza sativa) respectively. Under long-day conditions, varieties with nonfunctional alleles flowered significantly earlier than those with functional alleles. However, the four genes have different genetic effects in the regulation of flowering time: Hd1 and OsPRR37 are major genes that generally regulate rice flowering time for all varieties, while DTH8 and Ghd7 only regulate regional rice varieties. Geographic analysis and network studies suggested that the nonfunctional alleles of these suppression loci with regional adaptability were derived recently and independently. Alleles with regional adaptability should be taken into consideration for genetic improvement. The rich genetic variations in these four genes, which adapt rice to different environments, provide the flexibility needed for breeding rice varieties with diverse flowering times.


Asunto(s)
Alelos , Flores/metabolismo , Flores/fisiología , Oryza/metabolismo , Oryza/fisiología , Proteínas de Plantas/metabolismo , Flores/genética , Regulación de la Expresión Génica de las Plantas/genética , Regulación de la Expresión Génica de las Plantas/fisiología , Genes Supresores/fisiología , Oryza/genética , Proteínas de Plantas/genética
2.
Mol Genet Genomics ; 290(3): 1085-94, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25532750

RESUMEN

Brown spots on mature leaves from the heading to ripening stages in rice are considered to be lesions induced by heat stress. However, there are few studies of lesions that are induced by heat stress rather than by pathogen infections. To understand the genetic background underlying such lesions, we used the chromosome segment substitution line (CSSL) SL518, derived from a distant cross between rice cultivars Koshihikari (japonica) and Nona Bokra (indica). We observed brown spots on mature leaf blades of the CSSL, although the parents barely showed any spots. Spot formation in SL518 was accelerated by high temperature, suggesting that the candidate gene for spot formation is related to heat stress response. Using progeny derived from a cross between SL518 and Koshihikari, we mapped the causative gene, BROWN-SPOTTED LEAF 1 (BSPL1), on chromosome 5. We speculated that one or more Nona Bokra genes suppress spot formation caused by BSPL1 and identified candidate genomic regions on chromosomes 2 and 9 using a cross between a near-isogenic line for BSPL1 and other CSSLs possessing Nona Bokra segments in the Koshihikari genetic background. In conclusion, our data support the concept that multiple genes are complementarily involved in brown spot formation induced by heat stress and will be useful for cloning of the novel gene(s) related to the spot formation.


Asunto(s)
Cromosomas de las Plantas/genética , Genes Supresores/fisiología , Oryza/genética , Enfermedades de las Plantas/inmunología , Sitios de Carácter Cuantitativo/genética , Estrés Fisiológico/genética , Mapeo Cromosómico , Resistencia a la Enfermedad , Genes de Plantas/genética , Calor , Oryza/inmunología , Oryza/microbiología , Oryza/fisiología , Enfermedades de las Plantas/microbiología , Hojas de la Planta/genética , Hojas de la Planta/inmunología , Hojas de la Planta/microbiología , Hojas de la Planta/fisiología , Xanthomonas/fisiología
3.
Gut ; 63(6): 984-95, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24026351

RESUMEN

BACKGROUND: Nuclear protein 1 (Nupr1) is a major factor in the cell stress response required for Kras(G12D)-driven formation of pancreatic intraepithelial neoplastic lesions (PanINs). We evaluated the relevance of Nupr1 in the development of pancreatic cancer. METHODS: We investigated the role of Nupr1 in pancreatic ductal adenocarcinoma (PDAC) progression beyond PanINs in Pdx1-cre;LSL-Kras(G12D);Ink4a/Arf(fl/fl)(KIC) mice. RESULTS: Even in the context of the second tumorigenic hit of Ink4a/Arf deletion, Nupr1 deficiency led to suppression of malignant transformation involving caspase 3 activation in premalignant cells of KIC pancreas. Only half of Nupr1-deficient;KIC mice achieved PDAC development, and incident cases survived longer than Nupr1(wt);KIC mice. This was associated with the development of well-differentiated PDACs in Nupr1-deficient;KIC mice, which displayed enrichment of genes characteristic of the recently identified human classical PDAC subtype. Nupr1-deficient;KIC PDACs also shared with human classical PDACs the overexpression of the Kras-activation gene signature. In contrast, Nupr1(wt);KIC mice developed invasive PDACs with enriched gene signature of human quasi-mesenchymal (QM) PDACs. Cells derived from Nupr1-deficient;KIC PDACs growth in an anchorage-independent manner in vitro had higher aldehyde dehydrogenase activity and overexpressed nanog, Oct-4 and Sox2 transcripts compared with Nupr1(wt);KIC cells. Moreover, Nupr1-deficient and Nurpr1(wt);KIC cells differed in their sensitivity to the nucleoside analogues Ly101-4b and WJQ63. Together, these findings show the pivotal role of Nupr1 in both the initiation and late stages of PDAC in vivo, with a potential impact on PDAC cell stemness. CONCLUSIONS: According to Nupr1 status, KIC mice develop tumours that phenocopy human classical or QM-PDAC, respectively, and present differential drug sensitivity, thus becoming attractive models for preclinical drug trials.


Asunto(s)
Adenocarcinoma/genética , Carcinogénesis/genética , Proteínas de Unión al ADN/genética , Expresión Génica , Genes Supresores/fisiología , Proteínas de Neoplasias/genética , Neoplasias Pancreáticas/genética , Adenocarcinoma/química , Adenocarcinoma/patología , Animales , Antimetabolitos Antineoplásicos/farmacología , Cadherinas/análisis , Caspasa 3/análisis , Supervivencia Celular/efectos de los fármacos , Claudina-1/análisis , Inhibidor p16 de la Quinasa Dependiente de Ciclina/genética , Desoxicitidina/análogos & derivados , Desoxicitidina/farmacología , Modelos Animales de Enfermedad , Transición Epitelial-Mesenquimal/genética , Heterocigoto , Proteínas Inmediatas-Precoces/análisis , Esperanza de Vida , Ratones , Ratones Noqueados , Mucina-1/análisis , Neoplasias Pancreáticas/química , Neoplasias Pancreáticas/patología , Proteínas Proto-Oncogénicas p21(ras)/genética , Transducción de Señal/genética , Factor de Crecimiento Transformador beta1/análisis , Células Tumorales Cultivadas , Gemcitabina
4.
Mol Plant Microbe Interact ; 24(8): 973-83, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21751853

RESUMEN

Begomoviruses (family Geminiviridae) are single-stranded DNA viruses transmitted by the whitefly Bemisia tabaci. Many economically important diseases in crops are caused by begomoviruses, particularly in tropical and subtropical environments. These include the betasatellite-associated begomoviruses causing cotton leaf curl disease (CLCuD) that causes significant losses to a mainstay of the economy of Pakistan, cotton. RNA interference (RNAi) or gene silencing is a natural defense response of plants against invading viruses. In counter-defense, viruses encode suppressors of gene silencing that allow them to effectively invade plants. Here, we have analyzed the ability of the begomovirus Cotton leaf curl Multan virus (CLCuMV) and its associated betasatellite, Cotton leaf curl Multan ß-satellite (CLCuMB) which, together, cause CLCuD, and the nonessential alphasatellite (Cotton leaf curl Multan alphasatellite [CLCuMA]) for their ability to suppress gene silencing in Nicotiana benthamiana. The results showed that CLCuMV by itself was unable to efficiently block silencing. However, in the presence of the betasatellite, gene silencing was entirely suppressed. Silencing was not affected in any way when infections included CLCuMA, although the alphasatellite was, for the first time, shown to be a target of RNA silencing, inducing the production in planta of specific small interfering RNAs, the effectors of silencing. Subsequently, using a quantitative real-time polymerase chain reaction assay and Northern blot analysis, the ability of all proteins encoded by CLCuMV and CLCuMB were assessed for their ability to suppress RNAi and the relative strengths of their suppression activity were compared. The analysis showed that the V2, C2, C4, and ßC1 proteins exhibited suppressor activity, with the V2 showing the strongest activity. In addition, V2, C4, and ßC1 were examined for their ability to bind RNA and shown to have distinct specificities. Although each of these proteins has, for other begomoviruses or betasatellites, been previously shown to have suppressor activity, this is the first time all proteins encoded by a geminiviruses (or begomovirus-betasatellite complex) have been examined and also the first for which four separate suppressors have been identified.


Asunto(s)
Begomovirus/metabolismo , Nicotiana/virología , Hojas de la Planta/virología , Interferencia de ARN , Virus Satélites/metabolismo , Agrobacterium tumefaciens , Begomovirus/genética , Regulación Viral de la Expresión Génica/fisiología , Genes Supresores/fisiología , Proteínas Fluorescentes Verdes/genética , Interacciones Huésped-Patógeno , Unión Proteica , ARN Viral/metabolismo , Virus Satélites/genética , Nicotiana/genética , Transgenes/fisiología , Proteínas Virales/genética , Proteínas Virales/metabolismo
5.
Nat Cell Biol ; 5(7): 655-60, 2003 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-12833065

RESUMEN

The E2f1 transcription factor, which regulates genes required for S-phase entry, also induces apoptosis by transcriptional and post-translational mechanisms. As E2f1 is inducible by DNA damage we investigated its importance in vivo in ultraviolet (UV)-induced apoptosis, a protective mechanism that prevents the epidermis from accumulating UV-induced mutations. Contrary to expectation, E2f1-/- mice demonstrated enhanced keratinocyte apoptosis after UVB exposure, whereas apoptosis was suppressed by epidermis-specific overexpression of human E2F1. Apoptosis induced by -radiation was also repressed by E2f1. E2f1-/-;Trp53-/- double knockout mice exhibited the elevated UVB-induced apoptosis of E2f1-/- alone, rather than the profound apoptosis defect seen in Trp53-/- mice, indicating that Trp53 (p53) lies functionally upstream of E2f1. Transfecting E2F1 into E2f1-/-;Trp53-/- primary fibroblasts suppressed UVB-induced apoptosis and this suppression was relieved by Trp53. The double knockout also reverted the abnormal sex ratio and early-onset tumours of Trp53-/- mice. These results imply that E2f1 functions as a suppressor of an apoptosis pathway that is initiated by DNA photoproducts and perhaps genetic abnormalities; p53 relieves this suppression.


Asunto(s)
Apoptosis/genética , Proteínas de Ciclo Celular , Supervivencia Celular/genética , Transformación Celular Neoplásica/genética , Proteínas de Unión al ADN , Genes Supresores/fisiología , Neoplasias Cutáneas/genética , Factores de Transcripción/deficiencia , Proteína p53 Supresora de Tumor/deficiencia , Animales , Apoptosis/efectos de la radiación , Supervivencia Celular/efectos de la radiación , Transformación Celular Neoplásica/metabolismo , Células Cultivadas , Daño del ADN/genética , Daño del ADN/efectos de la radiación , Factores de Transcripción E2F , Factor de Transcripción E2F1 , Femenino , Fibroblastos/metabolismo , Fibroblastos/patología , Fibroblastos/efectos de la radiación , Regulación Neoplásica de la Expresión Génica/genética , Queratinocitos/metabolismo , Queratinocitos/patología , Queratinocitos/efectos de la radiación , Masculino , Ratones , Ratones Noqueados , Mutación/genética , Mutación/efectos de la radiación , Razón de Masculinidad , Neoplasias Cutáneas/etiología , Neoplasias Cutáneas/metabolismo , Factores de Transcripción/genética , Proteína p53 Supresora de Tumor/genética , Rayos Ultravioleta/efectos adversos
6.
Eukaryot Cell ; 8(7): 1027-37, 2009 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-19465564

RESUMEN

Sporulation of Saccharomyces cerevisiae is a developmental process in which four haploid spores are generated inside a diploid cell. Gip1, a sporulation-specific targeting subunit of protein phosphatase type 1, together with its catalytic subunit, Glc7, colocalizes with septins along the extending prospore membrane and is required for septin organization and spore wall formation. However, the mechanism by which Gip1-Glc7 phosphatase promotes these events is unclear. We show here that Ysw1, a sporulation-specific coiled-coil protein, has a functional relationship to Gip1-Glc7 phosphatase. Overexpression of YSW1 partially suppresses the sporulation defect of a temperature-sensitive allele of gip1. Ysw1 interacts with Gip1 in a two-hybrid assay, and this interaction is required for suppression. Ysw1 tagged with green fluorescent protein colocalizes with septins and Gip1 along the extending prospore membrane during spore formation. Sporulation is partially defective in ysw1Delta mutant, and cytological analysis revealed that septin structures are perturbed and prospore membrane extension is aberrant in ysw1Delta cells. These results suggest that Ysw1 functions with the Gip1-Glc7 phosphatase to promote proper septin organization and prospore membrane formation.


Asunto(s)
Genes Supresores/fisiología , Reproducción Asexuada/fisiología , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Esporas Fúngicas/metabolismo , Transporte Activo de Núcleo Celular/genética , Secuencia de Aminoácidos , Secuencia de Bases , Membranas Intracelulares/metabolismo , Membranas Intracelulares/ultraestructura , Meiosis/genética , Datos de Secuencia Molecular , Proteína Fosfatasa 1/genética , Proteína Fosfatasa 1/metabolismo , Transporte de Proteínas/genética , Saccharomyces cerevisiae/ultraestructura , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/aislamiento & purificación , Esporas Fúngicas/ultraestructura
7.
PLoS Genet ; 3(8): e134, 2007 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-17696614

RESUMEN

Genome instability is a hallmark of cancer cells. One class of genome aberrations prevalent in tumor cells is termed gross chromosomal rearrangements (GCRs). GCRs comprise chromosome translocations, amplifications, inversions, deletion of whole chromosome arms, and interstitial deletions. Here, we report the results of a genome-wide screen in Saccharomyces cerevisiae aimed at identifying novel suppressors of GCR formation. The most potent novel GCR suppressor identified is BUD16, the gene coding for yeast pyridoxal kinase (Pdxk), a key enzyme in the metabolism of pyridoxal 5' phosphate (PLP), the biologically active form of vitamin B6. We show that Pdxk potently suppresses GCR events by curtailing the appearance of DNA lesions during the cell cycle. We also show that pharmacological inhibition of Pdxk in human cells leads to the production of DSBs and activation of the DNA damage checkpoint. Finally, our evidence suggests that PLP deficiency threatens genome integrity, most likely via its role in dTMP biosynthesis, as Pdxk-deficient cells accumulate uracil in their nuclear DNA and are sensitive to inhibition of ribonucleotide reductase. Since Pdxk links diet to genome stability, our work supports the hypothesis that dietary micronutrients reduce cancer risk by curtailing the accumulation of DNA damage and suggests that micronutrient depletion could be part of a defense mechanism against hyperproliferation.


Asunto(s)
Aberraciones Cromosómicas , Cromosomas Fúngicos , Daño del ADN , Genes Supresores , Fosfato de Piridoxal/fisiología , Saccharomyces cerevisiae/genética , Roturas del ADN de Doble Cadena , Genes Supresores/fisiología , Genes cdc , Técnicas Genéticas , Genoma Fúngico , Inestabilidad Genómica , Células HeLa , Humanos , Modelos Biológicos , Piridoxal Quinasa/genética , Piridoxal Quinasa/fisiología , Fosfato de Piridoxal/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/fisiología , Supresión Genética
8.
Thorax ; 64(2): 179-80, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19176844

RESUMEN

The molecular pathology of mutant F508del CFTR is partially corrected in vitro by the secondary amino acid substitution R553Q in the ABC signature motif. An individual with the CFTR genotype R553X/F508del-R553Q showed the typical symptoms and electrophysiological anomalies of cystic fibrosis in the airways and intestine. Sweat chloride concentrations were normal early in life, but were later raised into the range that is diagnostic for cystic fibrosis, suggesting that R553Q could temporarily correct the basic defect in sweat glands. R553Q caused a delay in diagnosis because of false negative sweat tests but was not a disease reverting suppressor mutation as had been inferred from cellular models.


Asunto(s)
Regulador de Conductancia de Transmembrana de Fibrosis Quística/genética , Fibrosis Quística/genética , Mutación/genética , Enfermedades de las Glándulas Sudoríparas/genética , Adulto , Fibrosis Quística/diagnóstico , Reacciones Falso Negativas , Femenino , Genes Supresores/fisiología , Humanos , Cloruro de Sodio/metabolismo , Sudor/química
9.
J Cell Biol ; 136(5): 969-82, 1997 Mar 10.
Artículo en Inglés | MEDLINE | ID: mdl-9060463

RESUMEN

The MPS1 gene from Saccharomyces cerevisiae encodes an essential protein kinase required for spindle pole body (SPB) duplication and for the mitotic spindle assembly checkpoint. Cells with the mps1-1 mutation fail early in SPB duplication and proceed through monopolar mitosis with lethal consequences. We identified CDC37 as a multicopy suppressor of mps1-1 temperature-sensitive growth. Suppression is allele specific, and synthetic lethal interactions occur between mps1 and cdc37 alleles. We examined the cdc37-1 phenotype for defects related to the SPB cycle. The cdc37-1 temperature-sensitive allele causes unbudded, G1 arrest at Start (Reed, S.I. 1980. Genetics. 95: 561-577). Reciprocal shifts demonstrate that cdc37-1 arrest is interdependent with alpha-factor arrest but is not a normal Start arrest. Although the cells are responsive to alpha-factor at the arrest, SPB duplication is uncoupled from other aspects of G1 progression and proceeds past the satellite-bearing SPB stage normally seen at Start. Electron microscopy reveals side-by-side SPBs at cdc37-1 arrest. The outer plaque of one SPB is missing or reduced, while the other is normal. Using the mps2-1 mutation to distinguish between the SPBs, we find that the outer plaque defect is specific to the new SPB. This phenotype may arise in part from reduced Mps1p function: although Mps1p protein levels are unaffected by the cdc37-1 mutation, kinase activity is markedly reduced. These data demonstrate a requirement for CDC37 in SPB duplication and suggest a role for this gene in G1 control. CDC37 may provide a chaperone function that promotes the activity of protein kinases.


Asunto(s)
Proteínas de Ciclo Celular/fisiología , Proteínas de Drosophila , Chaperonas Moleculares , Proteínas Serina-Treonina Quinasas/fisiología , Proteínas Tirosina Quinasas/fisiología , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Huso Acromático/metabolismo , Secuencia de Bases , Proteínas de Ciclo Celular/genética , Epistasis Genética , Genes Fúngicos/fisiología , Genes Supresores/fisiología , Mitosis , Datos de Secuencia Molecular , Proteínas Serina-Treonina Quinasas/genética , Proteínas Serina-Treonina Quinasas/metabolismo , Proteínas Tirosina Quinasas/genética , Proteínas Tirosina Quinasas/metabolismo , Proteínas Recombinantes de Fusión , Mapeo Restrictivo , Saccharomyces cerevisiae/citología , Saccharomyces cerevisiae/crecimiento & desarrollo
10.
J Cell Biol ; 122(5): 1103-17, 1993 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-7689080

RESUMEN

Squamous carcinomas of both human and rodent origin can undergo a transition to a more invasive, metastatic phenotype involving reorganization of the cytoskeleton, loss of cell adhesion molecules such as E-cadherin and acquisition of a fibroblastoid or spindle cell morphology. We have developed a series of cell lines from mouse skin tumors which represent different stages of carcinogenesis, including benign papillomas, and clonally related squamous and spindle carcinomas derived from the same primary tumor. Some spindle cells continue to express keratins, but with a poorly organized keratin filament network, whereas in others no keratin expression is detectable. All of the spindle cells lack expression of the cell adhesion molecule E-cadherin and the desmosomal component desmoplakin. Loss of these cell surface proteins therefore appears to precede the destabilization of the keratin network. At the genetic level, it is not known whether such changes involve activation of dominantly acting oncogenes or loss of a suppressor function which controls epithelial differentiation. To examine this question, we have carried out a series of fusion experiments between a highly malignant mouse skin spindle cell carcinoma and cell lines derived from premalignant or malignant mouse skin tumors, including both squamous and spindle carcinoma variants. The results show that the spindle cell phenotype as determined by cell morphology and lack of expression of keratin, E-cadherin, and desmoplakin proteins, is recessive in all hybrids with squamous cells. The hybrids expressed all of these differentiation markers, and showed suppression of tumorigenicity to a variable level dependent upon the tumorigenic properties of the less malignant fusion partner. Our results suggest that acquisition of the spindle cell phenotype involves functional loss of a gene(s) which controls epithelial differentiation.


Asunto(s)
Carcinoma de Células Escamosas/patología , Carcinoma/patología , Transformación Celular Neoplásica/genética , Transformación Celular Neoplásica/patología , Genes Recesivos/genética , Neoplasias Cutáneas/patología , Animales , Antígenos de Diferenciación/análisis , Antígenos de Diferenciación/genética , Cadherinas/análisis , Cadherinas/genética , Carcinoma/química , Carcinoma/ultraestructura , Carcinoma de Células Escamosas/química , Carcinoma de Células Escamosas/ultraestructura , Proteínas del Citoesqueleto/análisis , Proteínas del Citoesqueleto/genética , Citoesqueleto/química , Citoesqueleto/ultraestructura , Desmoplaquinas , Epidermis/química , Epidermis/patología , Epidermis/ultraestructura , Técnica del Anticuerpo Fluorescente , Regulación de la Expresión Génica/genética , Genes Supresores/genética , Genes Supresores/fisiología , Células Híbridas/química , Inmunohistoquímica , Queratinas/análisis , Queratinas/genética , Ratones , Fenotipo , Neoplasias Cutáneas/química , Neoplasias Cutáneas/ultraestructura , Células Tumorales Cultivadas
11.
Neuron ; 22(2): 301-12, 1999 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-10069336

RESUMEN

Genetic analysis of growth cone guidance choice points in Drosophila identified neuronal receptor protein tyrosine phosphatases (RPTPs) as key determinants of axon pathfinding behavior. We now demonstrate that the Drosophila Abl tyrosine kinase functions in the intersegmental nerve b (ISNb) motor choice point pathway as an antagonist of the RPTP Dlar. The function of Abl in this pathway is dependent on an intact catalytic domain. We also show that the Abl phosphoprotein substrate Enabled (Ena) is required for choice point navigation. Both Abl and Ena proteins associate with the Dlar cytoplasmic domain and serve as substrates for Dlar in vitro, suggesting that they play a direct role in the Dlar pathway. These data suggest that Dlar, Abl, and Ena define a phosphorylation state-dependent switch that controls growth cone behavior by transmitting signals at the cell surface to the actin cytoskeleton.


Asunto(s)
Axones/fisiología , Proteínas de Unión al ADN/fisiología , Conos de Crecimiento/fisiología , Neuronas Motoras/fisiología , Proteínas Tirosina Fosfatasas/fisiología , Proteínas Proto-Oncogénicas c-abl/fisiología , Animales , Drosophila , Proteínas de Drosophila , Genes Supresores/fisiología , Genes abl/genética , Fenotipo , Proteínas Tirosina Fosfatasas/genética , Proteínas Proto-Oncogénicas c-abl/genética , Proteínas Tirosina Fosfatasas Similares a Receptores , Especificidad por Sustrato
12.
Neuron ; 37(1): 53-65, 2003 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-12526772

RESUMEN

Netrins promote axon outgrowth and turning through DCC/UNC-40 receptors. To characterize Netrin signaling, we generated a gain-of-function UNC-40 molecule, MYR::UNC-40. MYR::UNC-40 causes axon guidance defects, excess axon branching, and excessive axon and cell body outgrowth. These defects are suppressed by loss-of-function mutations in ced-10 (a Rac GTPase), unc-34 (an Enabled homolog), and unc-115 (a putative actin binding protein). ced-10, unc-34, and unc-115 also function in endogenous unc-40 signaling. Our results indicate that Enabled functions in axonal attraction as well as axon repulsion. UNC-40 has two conserved cytoplasmic motifs that mediate distinct downstream pathways: CED-10, UNC-115, and the UNC-40 P2 motif act in one pathway, and UNC-34 and the UNC-40 P1 motif act in the other. Thus, UNC-40 might act as a scaffold to deliver several independent signals to the actin cytoskeleton.


Asunto(s)
Moléculas de Adhesión Celular/metabolismo , Comunicación Celular/fisiología , Diferenciación Celular/fisiología , Conos de Crecimiento/metabolismo , Sistema Nervioso/embriología , Receptores de Superficie Celular/metabolismo , Transducción de Señal/genética , Citoesqueleto de Actina/genética , Citoesqueleto de Actina/metabolismo , Animales , Caenorhabditis elegans , Proteínas de Caenorhabditis elegans/genética , Proteínas de Caenorhabditis elegans/metabolismo , Moléculas de Adhesión Celular/genética , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/metabolismo , Genes Supresores/fisiología , Conos de Crecimiento/ultraestructura , Proteínas de Microfilamentos/genética , Proteínas de Microfilamentos/metabolismo , Mutación/genética , Sistema Nervioso/citología , Sistema Nervioso/metabolismo , Malformaciones del Sistema Nervioso/genética , Malformaciones del Sistema Nervioso/patología , Receptores de Netrina , Fenotipo , Regiones Promotoras Genéticas/genética , Estructura Terciaria de Proteína/genética , Receptores de Superficie Celular/genética , Proteínas Recombinantes de Fusión , Proteínas de Unión al GTP rac/genética , Proteínas de Unión al GTP rac/metabolismo
13.
Curr Biol ; 15(6): 555-60, 2005 Mar 29.
Artículo en Inglés | MEDLINE | ID: mdl-15797025

RESUMEN

In higher multicellular eukaryotes, highly specialized membrane structures or membrane trafficking events are required for supporting various physiological functions. SNAREs (soluble NSF attachment protein receptors) play an important role in specific membrane fusions. These protein receptors are assigned to subgroubs (Qa-, Qb-, Qc-, and R-SNARE) according to their specific SNARE structural motif. A specific set of Qa-, Qb-, and Qc-SNAREs, located on the target membrane, interact with R-SNARE on the vesicle to form a tight complex, leading to membrane fusion. The zig-1 mutant of Arabidopsis lacking Qb-SNARE VTI11 shows little shoot gravitropism and abnormal stem morphology. VTI11 and its homolog VTI12 exhibit partially overlapping but distinct intracellular localization and have different biological functions in plants. Little is known about how SNAREs are targeted to specific organelles, even though their functions and specific localization are closely linked. Here, we report that a novel mutation in VTI12 (zip1) was found as a dominant suppressor of zig-1. The zip1 mutation gave VTI12 the ability to function as VTI11 by changing both the specificity of SNARE complex formation and its intracellular localization. One amino acid substitution drastically altered VTI12, allowing it to suppress abnormalities of higher order physiological functions such as gravitropism and morphology. The zip1 mutation may be an indication of the flexibility in plant cell function afforded by gene duplication, particularly among the VTI11 genes and their recently diverged orthologs.


Asunto(s)
Proteínas de Arabidopsis/genética , Arabidopsis/genética , Proteínas de la Membrana/genética , Familia de Multigenes/genética , Mutación/genética , Secuencia de Aminoácidos , Arabidopsis/crecimiento & desarrollo , Arabidopsis/ultraestructura , Proteínas de Arabidopsis/metabolismo , Proteínas de Arabidopsis/fisiología , Secuencia de Bases , Componentes del Gen , Genes Supresores/fisiología , Gravitropismo/genética , Proteínas Fluorescentes Verdes , Inmunoprecipitación , Proteínas de la Membrana/metabolismo , Proteínas de la Membrana/fisiología , Microscopía Confocal , Microscopía Electrónica , Datos de Secuencia Molecular , Familia de Multigenes/fisiología , Tallos de la Planta/anatomía & histología , Tallos de la Planta/genética , Proteínas Qb-SNARE , Análisis de Secuencia de ADN
14.
Mol Cell Biol ; 15(10): 5618-26, 1995 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-7565713

RESUMEN

We identified and isolated a Saccharomyces cerevisiae gene which, when overexpressed, suppressed the temperature-sensitive phenotype of cells expressing a mutant allele of the gene encoding the mitochondrial chaperonin, Hsp60. This gene, SCS1 (suppressor of chaperonin sixty-1), encodes a 757-amino-acid protein of as yet unknown function which, nonetheless, has human, rice, and Caenorhabditis elegans homologs with high degrees (ca. 60%) of amino acid sequence identity. SCS1 is not an essential gene, but SCS1-null strains do not grow above 37 degrees C and show some growth-related defects at 30 degrees C as well. This gene is expressed at both 30 and 38 degrees C, producing little or no differences in mRNA levels at these two temperatures. Overexpression of SCS1 could not complement an HSP60-null allele, indicating that suppression was not due to the bypassing of Hsp60 activity. Of 10 other hsp60-ts alleles tested, five could also be suppressed by SCS1 overexpression. There were no common mutant phenotypes of the strains expressing these alleles that give any clue as to why they were suppressible while others were not. An epitope (influenza virus hemagglutinin)-tagged form of SCS1 in single copy complemented an SCS1-null allele. The Scs1-hemagglutinin protein was found to be at comparable levels and in similar multiply modified forms in cells growing at both 30 and 38 degrees C. Surprisingly, when localized either by cell fractionation procedures or by immunocytochemistry, these proteins were found not in mitochondria but in the cytosol. The overexpression of SCS1 had significant effects on the cellular levels of mRNAs encoding the proteins Cpn10 and Mgel, two other mitochondrial protein cochaperones, but not on mRNAs encoding a number of other mitochondrial or cytosolic proteins analyzed. The implications of these findings are discussed.


Asunto(s)
Chaperonina 60/genética , Proteínas Fúngicas/fisiología , Regulación Fúngica de la Expresión Génica/genética , Genes Supresores/fisiología , Proteínas Represoras/fisiología , Proteínas de Saccharomyces cerevisiae , Factores de Transcripción , Alelos , Secuencia de Aminoácidos , Secuencia de Bases , Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico , Clonación Molecular , Citosol/química , Proteínas Fúngicas/biosíntesis , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Dosificación de Gen , Genes Fúngicos/genética , Genes Fúngicos/fisiología , Mitocondrias/química , Datos de Secuencia Molecular , ARN Mensajero/biosíntesis , Proteínas Recombinantes de Fusión/biosíntesis , Proteínas Represoras/biosíntesis , Proteínas Represoras/química , Proteínas Represoras/genética , Homología de Secuencia de Aminoácido , Temperatura
15.
Biotechnol Lett ; 29(4): 641-5, 2007 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-17206371

RESUMEN

Agrobacterium-mediated gene transfer was used to co-express three virus-derived post-transcriptional gene silencing (PTGS) suppressors, P19 from tomato bushy stunt virus and two species of helper component proteinase (HcPro) from tobacco etch virus (TEV) and turnip mosaic virus, with beta-glucuronidase (GUS) in harvested lettuce leaf tissue to investigate whether GUS accumulation increases in the presence of PTGS suppressors. Co-expression incubations were 3-5 days at 4 and 22 degrees C. GUS activity and leaf viability were measured after incubation. Co-expression of PTGS suppressors did not elevate GUS expression levels. Under certain incubation conditions, co-expression of TEV HcPro significantly lowered transient GUS expression and was detrimental to leaf viability, suggesting that expression of PTGS silencers may have a negative effect on transient expression levels that outweighs any effects of PTGS suppression in harvested leaf tissues.


Asunto(s)
Celulasas/metabolismo , Regulación de la Expresión Génica de las Plantas/fisiología , Genes Supresores/fisiología , Lactuca/fisiología , Hojas de la Planta/fisiología , Interferencia de ARN/fisiología , Proteínas Recombinantes/metabolismo , Celulasas/genética , Plantas Modificadas Genéticamente/metabolismo
17.
Cell Calcium ; 39(4): 325-36, 2006 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-16458354

RESUMEN

The N-terminal 1-225 amino acids (aa) of the type 1 inositol 1,4,5-trisphosphate receptor (IP(3)R1) function as a suppressor/coupling domain. In this study we used IP(3)R-deficient B-lymphocytes to investigate the effects of modifications in this domain on IP(3) binding and Ca(2+)-release activity. Although the N-terminal 1-225 aa of IP(3)R3 had the same role as in IP(3)R1, the suppression of IP(3) binding for IP(3)R1 was lost when the suppressor/coupling domains were exchanged between the two isoforms. Resulting chimeric receptors showed a higher sensitivity to IP(3)-induced activation (IICR). Deletion of 11 aa in IP(3)R1 ([Delta76-86]-IP(3)R1) or replacing aa 76-86 of the IP(3)R1 in the suppressor/coupling domain by 13 aa of IP(3)R3 ([75-87 T3]-IP(3)R1) also resulted in increased IP(3) binding and sensitivity of IICR. These residues constitute the only part of the suppressor/coupling domain that is strikingly different between the two isoforms. Expression of [Delta76-86]-IP(3)R1 and of [75-87 T3]-IP(3)R1 increased the propensity of cells to undergo staurosporine-induced apoptosis, but had no effect on the Ca(2+) content in the endoplasmic reticulum. In the cell model used, our observations suggest that the sensitivity of the Ca(2+)-release activity of IP(3)R1 to IP(3) influences the sensitivity of the cells to apoptotic stimuli and that the suppressor/coupling domain may have an anti-apoptotic function by attenuating the sensitivity of IICR.


Asunto(s)
Apoptosis/fisiología , Canales de Calcio/fisiología , Calcio/fisiología , Inositol 1,4,5-Trifosfato/metabolismo , Receptores Citoplasmáticos y Nucleares/fisiología , Secuencia de Aminoácidos , Animales , Sitios de Unión/fisiología , Calcio/metabolismo , Canales de Calcio/genética , Caspasa 3 , Caspasas/metabolismo , Línea Celular , Pollos , Secuencia Conservada , Genes Supresores/fisiología , Humanos , Receptores de Inositol 1,4,5-Trifosfato , Datos de Secuencia Molecular , Estructura Terciaria de Proteína/fisiología , Receptores Citoplasmáticos y Nucleares/genética , Homología de Secuencia de Aminoácido
18.
Acta Biochim Pol ; 53(4): 739-45, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-17146497

RESUMEN

The ER24 aci (acidification) mutant of Saccharomyces cerevisiae excreting protons in the absence of glucose was transformed with a multicopy yeast DNA plasmid library. Three different DNA fragments restored the wild-type phenotype termed Aci- because it does not acidify the complete glucose medium under the tested conditions. Molecular dissection of the transforming DNA fragments identified two multicopy suppressor genes YJL185C, YJR129C and one allelic YLR376C. Disruption of either of the three genes in wild-type yeast strain resulted in acidification of the medium (Aci+ phenotype) similarly to the original ER24 mutant. These data indicate the contribution of the ER24 gene product Ylr376Cp and of the two suppressor gene products Yjl185Cp and Yjr129Cp to a complex regulation of the glyoxylate cycle in yeast.


Asunto(s)
Genes Fúngicos/fisiología , Glioxilatos/metabolismo , Redes y Vías Metabólicas/genética , Saccharomyces cerevisiae/genética , Proteínas Relacionadas con la Autofagia , Medios de Cultivo/análisis , Medios de Cultivo/química , Genes Supresores/fisiología , Concentración de Iones de Hidrógeno , Metiltransferasas/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética
19.
J Leukoc Biol ; 78(1): 9-13, 2005 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-15774547

RESUMEN

An effective immune system requires rapid and appropriate activation of inflammatory mechanisms but equally rapid and effective resolution of the inflammatory state. A review of the canonical host response to gram-negative bacteria, the lipopolysaccharide-Toll-like receptor 4 signaling cascade, highlights the induction of repressors that act at each step of the activation process. These inflammation suppressor genes are characterized by their induction in response to pathogen, typically late in the macrophage activation program, and include an expanding class of dominant-negative proteins derived from alternate splicing of common signaling components. Despite the expanse of anti-inflammatory mechanisms available to an activated macrophage, the frailty of this system is apparent in the large numbers of genes implicated in chronic inflammatory diseases. This apparent lack of redundancy between inflammation suppressor genes is discussed with regard to evolutionary benefits in generating a heterogeneous population of immune cells and consequential robustness in defense against new and evolving pathogens.


Asunto(s)
Genes Supresores/fisiología , Inflamación/genética , Activación de Macrófagos/genética , Macrófagos/inmunología , Glicoproteínas de Membrana/genética , Receptores de Superficie Celular/genética , Proteínas Represoras/genética , Animales , Regulación de la Expresión Génica/genética , Regulación de la Expresión Génica/inmunología , Humanos , Inflamación/inmunología , Inflamación/metabolismo , Lipopolisacáridos/inmunología , Lipopolisacáridos/metabolismo , Activación de Macrófagos/inmunología , Glicoproteínas de Membrana/inmunología , Glicoproteínas de Membrana/metabolismo , Receptores de Superficie Celular/inmunología , Receptores de Superficie Celular/metabolismo , Proteínas Represoras/inmunología , Proteínas Represoras/metabolismo , Transducción de Señal/genética , Transducción de Señal/inmunología , Receptores Toll-Like
20.
Nucleic Acids Res ; 27(17): 3455-65, 1999 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-10446233

RESUMEN

A combination of point mutations disrupting both stem 1 and stem 2 of U5 snRNA (U5AI) was found to confer a thermosensitive phenotype in vivo. In a strain expressing U5AI, pre-mRNA splicing was blocked before the first step through an inability of the mutant U5 snRNA to efficiently associate with the U4/U6 di-snRNP. Formation of early splicing complexes was not affected in extracts prepared from U5 snRNA mutant cells, while the capacity of these extracts to splice a pre-mRNA in vitro was greatly diminished. In addition, significant levels of a translation product derived from intron containing pre-mRNAs could be detected in vivo. The SSD1/SRK1 gene was identified as a multi-copy suppressor of the U5AI snRNA mutant. Single copy expression of SSD1/SRK1 was sufficient to suppress the thermosensitive phenotype, and high copy expression partially suppressed the splicing and U4/U6.U5 tri-snRNP assembly pheno-types. SSD1/SRK1 also suppressed thermosensitive mutations in the Prp18p and U1-70K proteins, while inhibiting growth of the cold sensitive U1-4U snRNA mutant at 30 degrees C. Thus we have identified SSD1/SRK1 as a general suppressor of splicing mutants.


Asunto(s)
Núcleo Celular/metabolismo , Genes Supresores/genética , Genes Supresores/fisiología , Mutación , Precursores del ARN/genética , Empalme del ARN , ARN Nuclear Pequeño/genética , Secuencia de Bases , Núcleo Celular/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , Fenotipo , Precursores del ARN/química , ARN Nuclear Pequeño/química , Ribonucleoproteína Nuclear Pequeña U4-U6/metabolismo , Supresión Genética , Temperatura
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