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1.
Plant Physiol ; 193(3): 2232-2247, 2023 Oct 26.
Artículo en Inglés | MEDLINE | ID: mdl-37534747

RESUMEN

Bacterial blight seriously affects the growth and production of cassava (Manihot esculenta Crantz), but disease resistance genes and the underlying molecular mechanism remain unknown. In this study, we found that LESION SIMULATING DISEASE 3 (MeLSD3) is essential for disease resistance in cassava. MeLSD3 physically interacts with SIRTUIN 1 (MeSRT1), inhibiting MeSRT1-mediated deacetylation modification at the acetylation of histone 3 at K9 (H3K9Ac). This leads to increased H3K9Ac levels and transcriptional activation of SUPPRESSOR OF BIR1 (SOBIR1) and FLAGELLIN-SENSITIVE2 (FLS2) in pattern-triggered immunity, resulting in immune responses in cassava. When MeLSD3 was silenced, the release of MeSRT1 directly decreased H3K9Ac levels and inhibited the transcription of SOBIR1 and FLS2, leading to decreased disease resistance. Notably, DELLA protein GIBBERELLIC ACID INSENSITIVE 1 (MeGAI1) also interacted with MeLSD3, which enhanced the interaction between MeLSD3 and MeSRT1 and further strengthened the inhibition of MeSRT1-mediated deacetylation modification at H3K9Ac of defense genes. In summary, this study illustrates the mechanism by which MeLSD3 interacts with MeSRT1 and MeGAI1, thereby mediating the level of H3K9Ac and the transcription of defense genes and immune responses in cassava.


Asunto(s)
Manihot , Xanthomonas axonopodis , Xanthomonas axonopodis/metabolismo , Manihot/genética , Manihot/metabolismo , Manihot/microbiología , Histonas/metabolismo , Resistencia a la Enfermedad/genética , Acetilación , Enfermedades de las Plantas/microbiología
2.
Int Microbiol ; 27(4): 1285-1296, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38190087

RESUMEN

Programmed cell death (PCD) has been reported in Xanthomonas axonopodis pv. glycines (Xag) wild type earlier and was indirectly shown to be induced by metabolic stress; however, deciphering the key proteins regulating the metabolic stress remained unrevealed. In this study, transcriptomic and proteomic analyses were performed to investigate the prominent pathways, having a role in the induction of metabolic stress in Xag cells undergoing PCD. A comprehensive analysis of transcriptome and proteome data revealed the major involvement of metabolic pathways related to branched chain amino acid degradation, such as acyl-CoA dehydrogenase and energy-yielding, ubiquinol:cytochrome c oxidoreductase complex, in Xag cells undergoing PCD. Consequently, oxidative stress response genes showed major upregulation in Xag cells in PCD-inducing medium; however, no such upregulation was observed at the protein level, indicative of depleted protein levels under excessive stress conditions. Activation of stress response and DNA repair proteins was also observed in Xag cells grown in PCD-inducing medium, which is indicative of excessive cellular damage. Thus, the findings indicate that programmed cell death in Xag is an outcome of metabolic stress in nutrient condition not suitable for a plant pathogen like Xanthomonas, which is more acclimatised with altogether a different nutritional requirement predominantly having an enriched carbohydrate source.


Asunto(s)
Apoptosis , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/genética , Estrés Oxidativo , Redes y Vías Metabólicas/genética , Xanthomonas axonopodis/metabolismo , Xanthomonas axonopodis/genética , Proteoma , Perfilación de la Expresión Génica , Proteómica , Regulación Bacteriana de la Expresión Génica , Estrés Fisiológico , Transcriptoma
3.
Anal Biochem ; 582: 113358, 2019 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-31278898

RESUMEN

2'-Fucosyllactose (2'-FL) is the most abundant milk oligosaccharide in human breast milk and it has several benefits for infant health. The quantification of 2'-FL in breast milk or in samples from other sources generally requires lengthy analyses. These methods cannot be used to simultaneously detect 2'-FL in numerous samples, which would be more time-efficient. In this study, two genes, namely α1,2-fucosidase from Xanthomonas manihotis and l-fucose dehydrogenase from Pseudomonas sp. no. 1143, were identified, cloned and overexpressed in E. coli. The recombinant enzymes were produced as 6 × His-tagged proteins and were purified to homogeneity using Ni2+ affinity chromatography. The purified α1,2-fucosidase and l-fucose dehydrogenase are monomers with molecular masses of 63 kDa and 36 kDa, respectively. Both enzymes have sufficiently high activities in phosphate-buffered saline (pH 7.0) at 37 °C, making it possible to develop a coupled enzyme reaction in a single buffer system for the quantitative determination of 2'-FL in a large number of samples simultaneously. This method can be used to quantify 2'-FL in infant formulas and in samples collected from different phases of the biotechnological production of this oligosaccharide. Furthermore, the method is applicable for the rapid screening of active variants during the development of microbial strains producing 2'-FL.


Asunto(s)
Pruebas de Enzimas , Fórmulas Infantiles/química , Leche Humana/química , Trisacáridos/análisis , Deshidrogenasas de Carbohidratos/química , Humanos , Lactante , Recién Nacido , Pseudomonas/metabolismo , Xanthomonas axonopodis/metabolismo , alfa-L-Fucosidasa/química
4.
J Pineal Res ; 64(1)2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29151275

RESUMEN

With 1 AP2 domain and 1 B3 domain, 7 MeRAVs in apetala2/ethylene response factor (AP2/ERF) gene family have been identified in cassava. However, the in vivo roles of these remain unknown. Gene expression assays showed that the transcripts of MeRAVs were commonly regulated after Xanthomonas axonopodis pv manihotis (Xam) and MeRAVs were specifically located in plant cell nuclei. Through virus-induced gene silencing (VIGS) in cassava, we found that MeRAV1 and MeRAV2 are essential for plant disease resistance against cassava bacterial blight, as shown by the bacterial propagation of Xam in plant leaves. Through VIGS in cassava leaves and overexpression in cassava leave protoplasts, we found that MeRAV1 and MeRAV2 positively regulated melatonin biosynthesis genes and the endogenous melatonin level. Further investigation showed that MeRAV1 and MeRAV2 are direct transcriptional activators of 3 melatonin biosynthesis genes in cassava, as evidenced by chromatin immunoprecipitation-PCR in cassava leaf protoplasts and electrophoretic mobility shift assay. Moreover, cassava melatonin biosynthesis genes also positively regulated plant disease resistance. Taken together, this study identified MeRAV1 and MeRAV2 as common and upstream transcription factors of melatonin synthesis genes in cassava and revealed a model of MeRAV1 and MeRAV2-melatonin biosynthesis genes-melatonin level in plant disease resistance against cassava bacterial blight.


Asunto(s)
Melatonina/biosíntesis , Xanthomonas axonopodis/patogenicidad , Resistencia a la Enfermedad , Enfermedades de las Plantas , Factores de Transcripción/metabolismo , Xanthomonas axonopodis/metabolismo
5.
Proc Natl Acad Sci U S A ; 109(28): E1972-9, 2012 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-22699502

RESUMEN

Cassava bacterial blight (CBB), incited by Xanthomonas axonopodis pv. manihotis (Xam), is the most important bacterial disease of cassava, a staple food source for millions of people in developing countries. Here we present a widely applicable strategy for elucidating the virulence components of a pathogen population. We report Illumina-based draft genomes for 65 Xam strains and deduce the phylogenetic relatedness of Xam across the areas where cassava is grown. Using an extensive database of effector proteins from animal and plant pathogens, we identify the effector repertoire for each sequenced strain and use a comparative sequence analysis to deduce the least polymorphic of the conserved effectors. These highly conserved effectors have been maintained over 11 countries, three continents, and 70 y of evolution and as such represent ideal targets for developing resistance strategies.


Asunto(s)
Manihot/metabolismo , Manihot/microbiología , Enfermedades de las Plantas/microbiología , Análisis de Secuencia de ADN/métodos , Xanthomonas axonopodis/metabolismo , Área Bajo la Curva , Progresión de la Enfermedad , Genoma Bacteriano , Genómica , Geografía , Inmunidad Innata , Modelos Genéticos , Datos de Secuencia Molecular , Filogenia , Enfermedades de las Plantas/genética , Polimorfismo Genético , Polimorfismo de Nucleótido Simple , Factores de Tiempo
6.
World J Microbiol Biotechnol ; 29(11): 2173-80, 2013 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-23719672

RESUMEN

L-glutamate plays a central role in nitrogen metabolism in all living organisms. In the genus Xanthomonas, the nitrogen nutrition is an important factor involved in the xanthan gum production, an important exopolysaccharide with various industrial and biotechnological applications. In this report, we demonstrate that the use of L-glutamate by the phytopathogen Xanthomonas axonopodis pv. citri as a nitrogen source in defined medium significantly increases the production of xanthan gum. This increase is dependent on the L-glutamate concentration. In addition, we have also characterized a glutamate transport system that is dependent on a proton gradient and on ATP and is modulated by amino acids that are structurally related to glutamate. This is the first biochemical characterization of an energy substrate transport system observed in a bacterial phytopathogen with a broad economic and industrial impact due to xanthan gum production.


Asunto(s)
Sistema de Transporte de Aminoácidos X-AG/metabolismo , Ácido Glutámico/metabolismo , Polisacáridos Bacterianos/metabolismo , Xanthomonas axonopodis/crecimiento & desarrollo , Xanthomonas axonopodis/metabolismo , Adenosina Trifosfato/metabolismo , Sistema de Transporte de Aminoácidos X-AG/genética , Proteínas Bacterianas/metabolismo , Nitrógeno/metabolismo , Prolina/metabolismo , Protones , Especificidad por Sustrato
7.
Pest Manag Sci ; 79(10): 4083-4093, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37291956

RESUMEN

BACKGROUND: p-Aminobenzoic acid (pABA) is an environmentally friendly bioactive metabolite synthesized by Lysobacter antibioticus. This compound showed an unusual antifungal mode of action based on cytokinesis inhibition. However, the potential antibacterial properties of pABA remain unexplored. RESULTS: In this study, pABA showed antibacterial activity against Gram-negative bacteria. This metabolite inhibited growth (EC50 = 4.02 mM), and reduced swimming motility, extracellular protease activity, and biofilm formation in the soybean pathogen Xanthomonas axonopodis pv. glycines (Xag). Although pABA was previously reported to inhibit fungal cell division, no apparent effect was observed on Xag cell division genes. Instead, pABA reduced the expression of various membrane integrity-related genes, such as cirA, czcA, czcB, emrE, and tolC. Consistently, scanning electron microscopy observations revealed that pABA caused major alternations in Xag morphology and blocked the formation of bacterial consortiums. In addition, pABA reduced the content and profile of outer membrane proteins and lipopolysaccharides in Xag, which may explain the observed effects. Preventive and curative applications of 10 mM pABA reduced Xag symptoms in soybean plants by 52.1% and 75.2%, respectively. CONCLUSIONS: The antibacterial properties of pABA were studied for the first time, revealing new insights into its potential application for the management of bacterial pathogens. Although pABA was previously reported to show an antifungal mode of action based on cytokinesis inhibition, this compound inhibited Xag growth by altering the outer membrane's integrity. © 2023 Society of Chemical Industry.


Asunto(s)
Fabaceae , Xanthomonas axonopodis , Xanthomonas , Glycine max/microbiología , Xanthomonas axonopodis/genética , Xanthomonas axonopodis/metabolismo , Ácido 4-Aminobenzoico/farmacología , Ácido 4-Aminobenzoico/química , Ácido 4-Aminobenzoico/metabolismo , Antifúngicos/farmacología , Antifúngicos/metabolismo , Glicina/metabolismo , Antibacterianos/farmacología , Enfermedades de las Plantas/microbiología , Xanthomonas/metabolismo
8.
J Biol Chem ; 286(29): 25628-43, 2011 Jul 22.
Artículo en Inglés | MEDLINE | ID: mdl-21596742

RESUMEN

Xanthomonas axonopodis pv. citri (Xac) causes citrus canker, provoking defoliation and premature fruit drop with concomitant economical damage. In plant pathogenic bacteria, lipopolysaccharides are important virulence factors, and they are being increasingly recognized as major pathogen-associated molecular patterns for plants. In general, three domains are recognized in a lipopolysaccharide: the hydrophobic lipid A, the hydrophilic O-antigen polysaccharide, and the core oligosaccharide, connecting lipid A and O-antigen. In this work, we have determined the structure of purified lipopolysaccharides obtained from Xanthomonas axonopodis pv. citri wild type and a mutant of the O-antigen ABC transporter encoded by the wzt gene. High pH anion exchange chromatography and matrix-assisted laser desorption/ionization mass spectrum analysis were performed, enabling determination of the structure not only of the released oligosaccharides and lipid A moieties but also the intact lipopolysaccharides. The results demonstrate that Xac wild type and Xacwzt LPSs are composed mainly of a penta- or tetra-acylated diglucosamine backbone attached to either two pyrophosphorylethanolamine groups or to one pyrophosphorylethanolamine group and one phosphorylethanolamine group. The core region consists of a branched oligosaccharide formed by Kdo2Hex6GalA3Fuc3NAcRha4 and two phosphate groups. As expected, the presence of a rhamnose homo-oligosaccharide as O-antigen was determined only in the Xac wild type lipopolysaccharide. In addition, we have examined how lipopolysaccharides from Xac function in the pathogenesis process. We analyzed the response of the different lipopolysaccharides during the stomata aperture closure cycle, the callose deposition, the expression of defense-related genes, and reactive oxygen species production in citrus leaves, suggesting a functional role of the O-antigen from Xac lipopolysaccharides in the basal response.


Asunto(s)
Citrus sinensis/inmunología , Citrus sinensis/microbiología , Inmunidad Innata , Lipopolisacáridos/química , Lipopolisacáridos/metabolismo , Xanthomonas axonopodis/fisiología , Transportadoras de Casetes de Unión a ATP/química , Transportadoras de Casetes de Unión a ATP/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Secuencia de Carbohidratos , Citrus sinensis/anatomía & histología , Citrus sinensis/genética , Regulación de la Expresión Génica de las Plantas/inmunología , Interacciones Huésped-Patógeno , Inmunidad Innata/genética , Lipopolisacáridos/biosíntesis , Lipopolisacáridos/aislamiento & purificación , Datos de Secuencia Molecular , Peróxidos/metabolismo , Hojas de la Planta/genética , Hojas de la Planta/inmunología , Hojas de la Planta/microbiología , Estomas de Plantas/anatomía & histología , Estomas de Plantas/inmunología , Estomas de Plantas/microbiología , Xanthomonas axonopodis/metabolismo
9.
Curr Microbiol ; 65(3): 304-12, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22674174

RESUMEN

Xanthomonas axonopodis pv. citri (Xac) is the causal agent of citrus bacterial canker, an economically important disease to world citrus industry. To monitor the infection process of Xac in different citrus plants, the enhanced green florescent protein (EGFP) visualizing system was constructed to visualize the propagation and localization in planta. First, the wild-type Xac was isolated from the diseased leaves of susceptible 'Bingtang' sweet orange, and then the isolated Xac was labeled with EGFP by triparental mating. After PCR identification, the growth kinetics and pathogenicity of the transformants were analyzed in comparison with the wild-type Xac. The EGFP-labeled bacteria were inoculated by spraying on the surface and infiltration in the mesophyll of 'Bingtang' sweet orange leaves. The bacterial cell multiplication and diffusion processes were observed directly under confocal laser scanning microscope at different intervals after inoculation. The results indicated that the EGFP-labeled Xac releasing clear green fluorescence light under fluorescent microscope showed the infection process and had the same pathogenicity as the wild type to citrus. Consequently, the labeled Xac demonstrated the ability as an efficient tool to monitor the pathogen infection.


Asunto(s)
Citrus sinensis/microbiología , Proteínas Fluorescentes Verdes/química , Enfermedades de las Plantas/microbiología , Xanthomonas axonopodis/química , Xanthomonas axonopodis/patogenicidad , Análisis de Varianza , Citrus sinensis/química , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Hojas de la Planta/química , Hojas de la Planta/microbiología , Xanthomonas axonopodis/genética , Xanthomonas axonopodis/metabolismo
10.
Pest Manag Sci ; 78(8): 3664-3675, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-35611815

RESUMEN

BACKGROUND: Xanthomonas axonopodis pv. glycines (Xag) is the causal agent of bacterial pustule disease and results in enormous losses in soybean production. Although isoflavones are known to be involved in soybean resistance against pathogen infection, the effects of exogenous isoflavones on soybean plants remain unexplored. RESULTS: Irrigation of soybean plants with isoflavone genistein inhibited plant growth for short periods, probably by inhibiting the tyrosine (brassinosteroids) kinase pathway, and increased disease resistance against Xag. The number of lesions was reduced by 59%-63% when applying 50 µg ml-1 genistein. The effects on disease resistance were observed for 15 days after treatment. Genistein also enhanced the disease resistance of soybean against the fungal pathogen Sclerotinia sclerotiorum. Exogenous genistein increased antioxidant capacity, decreased H2 O2 level and promoted the accumulation of phenolics in Xag-infected soybean leaves. Exogenous genistein reduced the amounts of endogenous daidzein, genistein and glycitein and increased the concentration of genistin, which was found to show strong antibacterial activity against the pathogen and to reduce the expression of virulence factor yapH, and flagella formation gene flgK. The expression of several soybean defense genes, such as chalcone isomerase, glutathione S-transferase and 1-aminocyclopropane-1-carboxylate oxidase 1, was upregulated after genistein treatment. CONCLUSIONS: The effects of exogenous genistein on soybean plants were examined for the first time, revealing new insights into the roles of isoflavones in soybean defense and demonstrating that irrigation with genistein can be a suitable method to induce disease resistance in soybean plants. © 2022 Society of Chemical Industry.


Asunto(s)
Fabaceae , Isoflavonas , Xanthomonas axonopodis , Resistencia a la Enfermedad , Genisteína/metabolismo , Genisteína/farmacología , Glicina/metabolismo , Isoflavonas/metabolismo , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/prevención & control , Glycine max/microbiología , Xanthomonas axonopodis/genética , Xanthomonas axonopodis/metabolismo
11.
Mol Plant Microbe Interact ; 24(6): 649-61, 2011 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21261465

RESUMEN

Xanthomonas axonopodis pv. citri is the causal agent of citrus canker, which is one of the most serious diseases of citrus. To understand the virulence mechanisms of X. axonopodis pv. citri, we designed and conducted genome-wide microarray analyses to characterize the HrpG and HrpX regulons, which are critical for the pathogenicity of X. axonopodis pv. citri. Our analyses revealed that 232 and 181 genes belonged to the HrpG and HrpX regulons, respectively. In total, 123 genes were overlapped in the two regulons at any of the three selected timepoints representing three growth stages of X. axonopodis pv. citri in XVM2 medium. Our results showed that HrpG and HrpX regulated all 24 type III secretion system genes, 23 type III secretion system effector genes, and 29 type II secretion system substrate genes. Our data revealed that X. axonopodis pv. citri regulates multiple cellular activities responding to the host environment, such as amino acid biosynthesis; oxidative phosphorylation; pentose-phosphate pathway; transport of sugar, iron, and potassium; and phenolic catabolism, through HrpX and HrpG. We found that 124 and 90 unknown genes were controlled by HrpG and HrpX, respectively. Our results suggest that HrpG and HrpX interplay with a global signaling network and co-ordinate the expression of multiple virulence factors for modification and adaption of host environment during X. axonopodis pv. citri infection.


Asunto(s)
Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica/fisiología , Factores de Transcripción/metabolismo , Xanthomonas axonopodis/patogenicidad , Aminoácidos/biosíntesis , Proteínas Bacterianas/genética , Transporte Biológico , Quimiotaxis , Perfilación de la Expresión Génica , Mutagénesis Insercional , Mutación , Análisis por Matrices de Proteínas , Factores de Transcripción/genética , Virulencia , Xanthomonas axonopodis/clasificación , Xanthomonas axonopodis/genética , Xanthomonas axonopodis/metabolismo
12.
BMC Plant Biol ; 10: 51, 2010 Mar 21.
Artículo en Inglés | MEDLINE | ID: mdl-20302677

RESUMEN

BACKGROUND: Plant natriuretic peptides (PNPs) belong to a novel class of peptidic signaling molecules that share some structural similarity to the N-terminal domain of expansins and affect physiological processes such as water and ion homeostasis at nano-molar concentrations. The citrus pathogen Xanthomonas axonopodis pv. citri possesses a PNP-like peptide (XacPNP) uniquely present in this bacteria. Previously we observed that the expression of XacPNP is induced upon infection and that lesions produced in leaves infected with a XacPNP deletion mutant were more necrotic and lead to earlier bacterial cell death, suggesting that the plant-like bacterial PNP enables the plant pathogen to modify host responses in order to create conditions favorable to its own survival. RESULTS: Here we measured chlorophyll fluorescence parameters and water potential of citrus leaves infiltrated with recombinant purified XacPNP and demonstrate that the peptide improves the physiological conditions of the tissue. Importantly, the proteomic analysis revealed that these responses are mirrored by rapid changes in the host proteome that include the up-regulation of Rubisco activase, ATP synthase CF1 alpha subunit, maturase K, and alpha- and beta-tubulin. CONCLUSIONS: We demonstrate that XacPNP induces changes in host photosynthesis at the level of protein expression and in photosynthetic efficiency in particular. Our findings suggest that the biotrophic pathogen can use the plant-like hormone to modulate the host cellular environment and in particular host metabolism and that such modulations weaken host defence.


Asunto(s)
Citrus/metabolismo , Citrus/microbiología , Interacciones Huésped-Patógeno , Péptidos Natriuréticos/metabolismo , Proteoma/metabolismo , Xanthomonas axonopodis/metabolismo , Arabidopsis/metabolismo , Clorofila/metabolismo , Biología Computacional , Electroforesis en Gel Bidimensional , Fluorescencia , Espectrometría de Masas , Mutación/genética , Fotosíntesis , Hojas de la Planta/metabolismo , Proteínas de Plantas/análisis , Proteínas de Plantas/química , Regiones Promotoras Genéticas/genética , Proteoma/química , Proteómica , Homología de Secuencia de Aminoácido
13.
J Bacteriol ; 191(22): 7121-2, 2009 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-19633082

RESUMEN

The protein Clp from Xanthomonas axonopodis pv. citri regulates pathogenesis and is a member of the CRP (cyclic AMP receptor protein) superfamily. We show that unlike the DNA-binding activity of other members of this family, the DNA-binding activity of Clp is allosterically inhibited by its effector and that cyclic di-GMP serves as that effector at physiological concentrations.


Asunto(s)
Regulación Alostérica/fisiología , Proteínas Bacterianas/metabolismo , GMP Cíclico/análogos & derivados , Xanthomonas axonopodis/metabolismo , Regulación Alostérica/genética , Proteínas Bacterianas/genética , GMP Cíclico/metabolismo , GMP Cíclico/fisiología , ADN/metabolismo , Polarización de Fluorescencia , Unión Proteica , Xanthomonas axonopodis/genética
14.
Biochim Biophys Acta ; 1784(2): 393-9, 2008 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-18088604

RESUMEN

In Xanthomonas axonopodis pv. citri (Xac or X. citri), the modA gene codes for a periplasmic protein (ModA) that is capable of binding molybdate and tungstate as part of the ABC-type transporter required for the uptake of micronutrients. In this study, we report the crystallographic structure of the Xac ModA protein with bound molybdate. The Xac ModA structure is similar to orthologs with known three-dimensional structures and consists of two nearly symmetrical domains separated by a hinge region where the oxyanion-binding site lies. Phylogenetic analysis of different ModA orthologs based on sequence alignments revealed three groups of molybdate-binding proteins: bacterial phytopathogens, enterobacteria and soil bacteria. Even though the ModA orthologs are segregated into different groups, the ligand-binding hydrogen bonds are mostly conserved, except for Archaeglobus fulgidus ModA. A detailed discussion of hydrophobic interactions in the active site is presented and two new residues, Ala38 and Ser151, are shown to be part of the ligand-binding pocket.


Asunto(s)
Molibdeno/química , Molibdeno/metabolismo , Proteínas de Unión Periplasmáticas/química , Proteínas de Unión Periplasmáticas/metabolismo , Xanthomonas axonopodis/química , Xanthomonas axonopodis/metabolismo , Secuencia de Aminoácidos , Sitios de Unión , Secuencia Conservada , Cristalografía por Rayos X , Ligandos , Datos de Secuencia Molecular , Proteínas de Unión Periplasmáticas/genética , Filogenia , Enfermedades de las Plantas/microbiología , Unión Proteica , Estructura Terciaria de Proteína , Alineación de Secuencia , Homología Estructural de Proteína , Xanthomonas axonopodis/genética , Xanthomonas axonopodis/patogenicidad
15.
Sci Rep ; 9(1): 2446, 2019 02 21.
Artículo en Inglés | MEDLINE | ID: mdl-30792399

RESUMEN

Xanthomonas axonopodis pv. glycines (Xag) is a phytopathogenic bacterium causing bacterial pustule disease in soybean. Functions of DNA methyltransferases have been characterized in animal pathogenic bacteria, but are poorly understood in plant pathogens. Here, we report that functions of a putative DNA methyltransferase, EadM, in Xag. An EadM-overexpressing strain, Xag(EadM), was less virulent than the wild-type carrying an empty vector, Xag(EV). Interestingly, the viable cell numbers of Xag(EadM) were much lower (10-fold) than those of Xag(EV) at the same optical density. Comparative proteomic analysis revealed that proteins involved in cell wall/membrane/envelope and iron-transport were more abundant. Based on proteomic analysis we carried out diverse phenotypic assays. Scanning electron microscopy revealed abnormal bacterial envelopes in Xag(EadM). Additionally, Xag(EadM) showed decreased stress tolerance against ciprofloxacin and sorbitol, but enhanced resistance to desiccation. Exopolysaccharide production in Xag(EadM) was also decreased. Production of siderophores, which are iron-chelators, was much higher in Xag(EadM). As in Xag, Escherichia coli expressing EadM showed significantly reduced (1000-fold) viable cell numbers at the same optical density. Thus, EadM is associated with virulence, envelope biogenesis, stress tolerance, exopolysaccharide production, and siderophore production. Our results provide valuable and fundamental information regarding DNA methyltransferase functions and their related cellular mechanisms in plant pathogenic bacteria.


Asunto(s)
Metiltransferasas/metabolismo , Xanthomonas axonopodis/enzimología , Xanthomonas axonopodis/metabolismo , Metilación de ADN/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Fabaceae/microbiología , Metiltransferasas/genética , Organismos Modificados Genéticamente , Fenotipo , Enfermedades de las Plantas/microbiología , Proteómica , Sideróforos/genética , Sideróforos/metabolismo , Glycine max/microbiología , Virulencia/genética , Xanthomonas axonopodis/genética
16.
FEMS Microbiol Lett ; 281(1): 87-97, 2008 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-18318843

RESUMEN

Lateral gene transfer (LGT) is considered as one of the drivers in bacterial genome evolution, usually associated with increased fitness and/or changes in behavior, especially if one considers pathogenic vs. non-pathogenic bacterial groups. The genomes of two phytopathogens, Xanthomonas campestris pv. campestris and Xanthomonas axonopodis pv. citri, were previously inspected for genome islands originating from LGT events, and, in this work, potentially early and late LGT events were identified according to their altered nucleotide composition. The biological role of the islands was also assessed, and pathogenicity, virulence and secondary metabolism pathways were functions highly represented, especially in islands that were found to be recently transferred. However, old islands are composed of a high proportion of genes related to cell primary metabolic functions. These old islands, normally undetected by traditional atypical composition analysis, but confirmed as product of LGT by atypical phylogenetic reconstruction, reveal the role of LGT events by replacing core metabolic genes normally inherited by vertical processes.


Asunto(s)
Transferencia de Gen Horizontal , Islas Genómicas , Xanthomonas axonopodis/genética , Xanthomonas campestris/genética , ADN Bacteriano/genética , Evolución Molecular , Redes y Vías Metabólicas/genética , Filogenia , Homología de Secuencia de Aminoácido , Factores de Virulencia/genética , Xanthomonas axonopodis/metabolismo , Xanthomonas axonopodis/patogenicidad , Xanthomonas campestris/metabolismo , Xanthomonas campestris/patogenicidad
17.
Phytopathology ; 98(12): 1252-60, 2008 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-18999999

RESUMEN

Ten strains of Xanthomonas axonopodis pv. glycines, the causal agent of bacterial pustule of soybean, which were isolated from various soybean growing regions of Thailand, produced an extracellular diffusible factor (DSF) related to a well-characterized quorum sensing molecule produced by other Xanthomonas spp. Genomic DNA of the 10 strains of X. axonopodis pv. glycines contained rpfF, a gene encoding for the biosynthesis of the DSF in X. campestris pv. campestris. The rpfF gene from one strain of X. axonopodis pv. glycines was fully sequenced, and the 289 aa product is closely related to RpfF of other Xanthomonas spp. (95 to 98% identical). Three independently generated rpfF mutants of X. axonopodis pv. glycines strain No12-2 were defective in the production of a DSF, as expected if rpfF encodes for DSF biosynthesis in X. axonopodis pv. glycines. The rpfF mutants of X. axonopodis pv. glycines exhibited reduced virulence on soybean and produced less than wild-type levels of extracellular polysaccharide and the extracellular enzymes carboxylmethylcellulase, protease, endo-beta-1,4-mannanase, and pectate lyase. Transcripts for three genes that encode for the extracellular enzymes protease, endoglucanase, and pectate lyase were at lower abundance in an rpfF mutant than in the parental strain of X. axonopodis pv. glycines. These results indicate that X. axonopodis pv. glycines produces a diffusible signal related to the DSF of X. campestris pv. campestris, which contributes to virulence and exoenzyme production by this phytopathogenic bacterium.


Asunto(s)
Proteínas Bacterianas/genética , Regulación Bacteriana de la Expresión Génica , Glycine max/microbiología , Xanthomonas axonopodis/genética , Proteínas Bacterianas/metabolismo , Celulasa/genética , Manosidasas/genética , Mutación , Péptido Hidrolasas/genética , Enfermedades de las Plantas/microbiología , Polisacárido Liasas/genética , Polisacáridos Bacterianos/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Tailandia , Virulencia/genética , Xanthomonas axonopodis/metabolismo , Xanthomonas axonopodis/patogenicidad
18.
Genet Mol Res ; 7(1): 117-26, 2008 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-18273827

RESUMEN

The oligopeptide-binding protein, OppA, binds and ushers oligopeptide substrates to the membrane-associated oligopeptide permease (Opp), a multi-component ABC-type transporter involved in the uptake of oligopeptides expressed by several bacterial species. In the present study, we report the cloning, purification, refolding and conformational analysis of a recombinant OppA protein derived from Xanthomonas axonopodis pv. citri (X. citri), the etiological agent of citrus canker. The oppA gene was expressed in Escherichia coli BL21 (DE3) strain under optimized inducing conditions and the recombinant protein remained largely insoluble. Solubilization was achieved following refolding of the denatured protein. Circular dichroism analysis indicated that the recombinant OppA protein preserved conformational features of orthologs expressed by other bacterial species. The refolded recombinant OppA represents a useful tool for structural and functional analyses of the X. citri protein.


Asunto(s)
Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Proteínas Portadoras/metabolismo , Proteínas de Transporte de Membrana/aislamiento & purificación , Proteínas de Transporte de Membrana/metabolismo , Pliegue de Proteína , Xanthomonas axonopodis/genética , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Secuencia de Bases , Proteínas Portadoras/genética , Proteínas Portadoras/aislamiento & purificación , Dicroismo Circular , Clonación Molecular , Biología Computacional/métodos , Escherichia coli/genética , Proteínas de Transporte de Membrana/química , Proteínas de Transporte de Membrana/genética , Datos de Secuencia Molecular , Operón , Plásmidos , Conformación Proteica , Desnaturalización Proteica , Renaturación de Proteína , Señales de Clasificación de Proteína , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Solubilidad , Especificidad por Sustrato , Xanthomonas axonopodis/metabolismo
19.
Genet Mol Res ; 6(4): 1169-77, 2007 Dec 11.
Artículo en Inglés | MEDLINE | ID: mdl-18273810

RESUMEN

The oligopeptide-binding protein, OppA, ushers oligopeptide substrates to the membrane-associated oligopeptide permease (Opp), a multi-component ABC-type transporter involved in the uptake of oligopeptides by several bacterial species. In the present study, we report a structural model and an oligopeptide docking analysis of the OppA protein expressed by Xanthomonas axonopodis pv. citri (X. citri), the etiological agent of citrus canker. The X. citri OppA structural model showed a conserved three-dimensional structure, irrespective of the low amino acid identities with previously defined structures of Bacillus subtilis and Salmonella typhimurium orthologs. Oligopeptide docking analysis carried out with the proposed model indicated that the X. citri OppA preferentially binds tri- and tetrapeptides. The present study represents the first structural analysis of an OppA ortholog expressed by a phytopathogen and contributes to the understanding of the physiology and nutritional strategies of X. citri.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Proteínas Portadoras/química , Proteínas Portadoras/metabolismo , Lipoproteínas/química , Lipoproteínas/metabolismo , Oligopéptidos/metabolismo , Xanthomonas axonopodis/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Sitios de Unión , Proteínas Portadoras/genética , Ligandos , Lipoproteínas/genética , Modelos Moleculares , Datos de Secuencia Molecular , Oligopéptidos/química , Enfermedades de las Plantas/microbiología , Unión Proteica , Conformación Proteica , Xanthomonas axonopodis/genética , Xanthomonas axonopodis/patogenicidad
20.
Microbiol Res ; 193: 111-120, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27825479

RESUMEN

Bacterial blight caused by Xanthomonas axonopodis pv. punicae (Xap) is a major disease of pomegranate. Xap secretes effector proteins via type III secretion system (T3SS) to suppress pathogen-associated molecular pattern (PAMP)-triggered plant immunity (PTI). Previously we reported that XopN, a conserved effector of Xap, modulate in planta bacterial growth, and blight disease. In continuation to that here we report the deletion of XopN from Xap caused higher accumulation of reactive oxygen species (ROS) including H2O2 and O2-. We quantitatively assessed the higher accumulation of H2O2 in pomegranate leaves infiltrated with Xap ΔxopN compared to Xap wild-type. We analysed that 1.5 to 3.3 fold increase in transcript expression of ROS and flg22-inducible genes, namely FRK1, GST1, WRKY29, PR1, PR2 and PR5 in Arabidopsis when challenged with Xap ΔxopN; contrary, the up-regulation of all the genes were compromised when challenged with either Xap wild-type or Xap ΔxopN+xopN. Further, we demonstrated the plasma-membrane based localization of XopN protein both in its natural and experimental hosts. All together, the present study suggested that XopN-T3SS effector of Xap gets localized in the plasma membrane and suppresses ROS-mediated early defense responses during blight pathogenesis in pomegranate.


Asunto(s)
Membrana Celular/química , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Lythraceae/microbiología , Enfermedades de las Plantas/microbiología , Especies Reactivas de Oxígeno/metabolismo , Factores de Virulencia/análisis , Xanthomonas axonopodis/metabolismo , Arabidopsis/genética , Arabidopsis/metabolismo , Arabidopsis/microbiología , Proteínas Bacterianas/análisis , Proteínas Bacterianas/genética , Eliminación de Gen , Lythraceae/genética , Lythraceae/metabolismo , Sistemas de Secreción Tipo III/metabolismo , Factores de Virulencia/genética
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