BioMAJ: a flexible framework for databanks synchronization and processing.
Bioinformatics
; 24(16): 1823-5, 2008 Aug 15.
Article
en En
| MEDLINE
| ID: mdl-18593718
ABSTRACT
UNLABELLED Large- and medium-scale computational molecular biology projects require accurate bioinformatics software and numerous heterogeneous biological databanks, which are distributed around the world. BioMAJ provides a flexible, robust, fully automated environment for managing such massive amounts of data. The JAVA application enables automation of the data update cycle process and supervision of the locally mirrored data repository. We have developed workflows that handle some of the most commonly used bioinformatics databases. A set of scripts is also available for post-synchronization data treatment consisting of indexation or format conversion (for NCBI blast, SRS, EMBOSS, GCG, etc.). BioMAJ can be easily extended by personal homemade processing scripts. Source history can be kept via html reports containing statements of locally managed databanks. AVAILABILITY:
http//biomaj.genouest.org. BioMAJ is free open software. It is freely available under the CECILL version 2 license.
Texto completo:
1
Banco de datos:
MEDLINE
Asunto principal:
Algoritmos
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Sistemas de Administración de Bases de Datos
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Lenguajes de Programación
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Interfaz Usuario-Computador
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Programas Informáticos
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Almacenamiento y Recuperación de la Información
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Bases de Datos Genéticas
Idioma:
En
Revista:
Bioinformatics
Asunto de la revista:
INFORMATICA MEDICA
Año:
2008
Tipo del documento:
Article
País de afiliación:
Francia