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NetMatchStar: an enhanced Cytoscape network querying app.
Rinnone, Fabio; Micale, Giovanni; Bonnici, Vincenzo; Bader, Gary D; Shasha, Dennis; Ferro, Alfredo; Pulvirenti, Alfredo; Giugno, Rosalba.
Afiliación
  • Rinnone F; Department of Math and Computer Science, University of Catania, Catania, 95125, Italy.
  • Micale G; Department of Math and Computer Science, University of Catania, Catania, 95125, Italy.
  • Bonnici V; Department of Computer Science, University of Verona, Verona, 37134, Italy.
  • Bader GD; The Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
  • Shasha D; Department of Computer Science, Courant Institute of Mathematical Sciences, New York University, New York, NY, 10012, USA.
  • Ferro A; Department of Clinical and Experimental Medicine, University of Catania, Catania, 95125, Italy.
  • Pulvirenti A; Department of Clinical and Experimental Medicine, University of Catania, Catania, 95125, Italy.
  • Giugno R; Department of Clinical and Experimental Medicine, University of Catania, Catania, 95125, Italy.
F1000Res ; 4: 479, 2015.
Article en En | MEDLINE | ID: mdl-26594341
ABSTRACT
We present NetMatchStar, a Cytoscape app to find all the occurrences of a query graph in a network and check for its significance as a motif with respect to seven different random models. The query can be uploaded or built from scratch using Cytoscape facilities. The app significantly enhances the previous NetMatch in style, performance and functionality. Notably NetMatchStar allows queries with wildcards.
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Texto completo: 1 Banco de datos: MEDLINE Idioma: En Revista: F1000Res Año: 2015 Tipo del documento: Article País de afiliación: Italia
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Banco de datos: MEDLINE Idioma: En Revista: F1000Res Año: 2015 Tipo del documento: Article País de afiliación: Italia