Your browser doesn't support javascript.
loading
CircView: a visualization and exploration tool for circular RNAs.
Feng, Jing; Xiang, Yu; Xia, Siyu; Liu, Huan; Wang, Jun; Ozguc, Fatma Muge; Lei, Lijun; Kong, Ruoshan; Diao, Lixia; He, Chunjiang; Han, Leng.
Afiliación
  • Feng J; International School of Software, Wuhan University.
  • Xiang Y; Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School.
  • Xia S; School of Basic Medical Sciences, Wuhan University.
  • Liu H; Wuhan Institute of Virology, Chinese Academy of Sciences.
  • Wang J; School of Basic Medical Sciences, Wuhan University.
  • Ozguc FM; Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School.
  • Lei L; School of Basic Medical Sciences, Wuhan University.
  • Kong R; International School of Software, Wuhan University.
  • Diao L; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center.
  • He C; School of Basic Medical Sciences and Hubei Province Key Laboratory of Allergy and Immunology, Wuhan University.
  • Han L; Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston McGovern Medical School.
Brief Bioinform ; 19(6): 1310-1316, 2018 11 27.
Article en En | MEDLINE | ID: mdl-29106456
Circular RNAs (circRNAs) are novel rising stars of noncoding RNAs, which are highly abundant and evolutionarily conserved across species. Number of publications related to circRNAs increased sharply in recent years, representing emerging focuses in the field. Therefore, tools, pipelines and databases have been developed to identify and store circRNAs. However, there is no existing tool to visualize and explore circRNAs. Therefore, we introduce CircView, a user-friendly visualization tool for circRNAs detected from existing tools. CircView enables users to visualize circRNAs and to quantify number of samples with detected circRNAs. CircView allows users to explore circRNAs detected by unique or multiple tools. Furthermore, CircView allows users to view the regulatory elements, such as microRNA response elements and RNA-binding protein binding sites. CircView is a unique tool to visualize and explore circRNAs, which helps users to better understand potential functions of circRNAs and design the functional experiments.
Asunto(s)

Texto completo: 1 Banco de datos: MEDLINE Asunto principal: ARN Idioma: En Revista: Brief Bioinform Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2018 Tipo del documento: Article

Texto completo: 1 Banco de datos: MEDLINE Asunto principal: ARN Idioma: En Revista: Brief Bioinform Asunto de la revista: BIOLOGIA / INFORMATICA MEDICA Año: 2018 Tipo del documento: Article