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Will we ever be able to accurately predict solubility?
Llompart, P; Minoletti, C; Baybekov, S; Horvath, D; Marcou, G; Varnek, A.
Afiliación
  • Llompart P; Laboratory of Chemoinformatics, UMR7140, University of Strasbourg, Strasbourg, France.
  • Minoletti C; IDD/CADD, Sanofi, Vitry-Sur-Seine, France.
  • Baybekov S; IDD/CADD, Sanofi, Vitry-Sur-Seine, France.
  • Horvath D; Laboratory of Chemoinformatics, UMR7140, University of Strasbourg, Strasbourg, France.
  • Marcou G; Laboratory of Chemoinformatics, UMR7140, University of Strasbourg, Strasbourg, France.
  • Varnek A; Laboratory of Chemoinformatics, UMR7140, University of Strasbourg, Strasbourg, France. g.marcou@unistra.fr.
Sci Data ; 11(1): 303, 2024 Mar 18.
Article en En | MEDLINE | ID: mdl-38499581
ABSTRACT
Accurate prediction of thermodynamic solubility by machine learning remains a challenge. Recent models often display good performances, but their reliability may be deceiving when used prospectively. This study investigates the origins of these discrepancies, following three directions a historical perspective, an analysis of the aqueous solubility dataverse and data quality. We investigated over 20 years of published solubility datasets and models, highlighting overlooked datasets and the overlaps between popular sets. We benchmarked recently published models on a novel curated solubility dataset and report poor performances. We also propose a workflow to cure aqueous solubility data aiming at producing useful models for bench chemist. Our results demonstrate that some state-of-the-art models are not ready for public usage because they lack a well-defined applicability domain and overlook historical data sources. We report the impact of factors influencing the utility of the models interlaboratory standard deviation, ionic state of the solute and data sources. The herein obtained models, and quality-assessed datasets are publicly available.

Texto completo: 1 Banco de datos: MEDLINE Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: Francia

Texto completo: 1 Banco de datos: MEDLINE Idioma: En Revista: Sci Data Año: 2024 Tipo del documento: Article País de afiliación: Francia