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1.
Int J Syst Evol Microbiol ; 70(8): 4544-4554, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32618559

RESUMEN

The taxonomic status of six strains of Acinetobacter obtained from meat samples, collected from supermarkets in Porto, Portugal, was investigated using polyphasic analysis. Partial rpoB sequence similarities lower than 95 % to other Acinetobacter species with validly published names led to the hypothesis that these strains represented novel species. This was confirmed based on comparative multilocus sequence analysis, which included the gyrB, recA and 16S rRNA genes, revealing that these strains represented two coherent lineages that were distinct from each other and from all known species. The names Acinetobacter portensis sp. nov. (comprising four strains) and Acinetobacter guerrae sp. nov. (comprising two strains) are proposed for these novel species. The species status of these two groups was confirmed by low (below 95 %) whole-genome sequence average nucleotide identity values and low (below 70 %) digital DNA-DNA hybridization similarities between the whole-genome sequences of the proposed type strains of each novel species and the representatives of the known Acinetobacter species. Phylogenomic treeing from core genome analysis supported these results. The coherence of each new species lineage was supported by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry differentiation of the species at the protein level, by cellular fatty acid profiles, and by unique and differential combinations of metabolic and physiological properties shared by each novel species. The type strain of A. portensis sp. nov. is AC 877T (=CCUG 68672T=CCM 8789T) and the type strain of A. guerrae sp. nov. is AC 1271T (=CCUG 68674T=CCM 8791T).


Asunto(s)
Acinetobacter/clasificación , Microbiología de Alimentos , Carne/microbiología , Filogenia , Acinetobacter/aislamiento & purificación , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , Genes Bacterianos , Tipificación de Secuencias Multilocus , Hibridación de Ácido Nucleico , Portugal , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
2.
J Microbiol Biotechnol ; 30(4): 526-532, 2020 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-32238766

RESUMEN

A bacterial strain, designated B301T and isolated from raw chicken meat obtained from a local market in Korea, was characterized and identified using a polyphasic taxonomic approach. Cells were gram-negative, non-motile, obligate-aerobic coccobacilli that were catalase-positive and oxidase-negative. The optimum growth conditions were 30°C, pH 7.0, and 0% NaCl in tryptic soy broth. Colonies were round, convex, smooth, and cream-colored on tryptic soy agar. Strain B301T has a genome size of 3,102,684 bp, with 2,840 protein-coding genes and 102 RNA genes. The 16S rRNA gene analysis revealed that strain B301T belongs to the genus Acinetobacter and shares highest sequence similarity (97.12%) with A. celticus ANC 4603T and A. sichuanensis WCHAc060041T. The average nucleotide identity and digital DNA-DNA hybridization values for closely related species were below the cutoff values for species delineation (95-96% and 70%, respectively). The DNA G+C content of strain B301T was 37.0%. The major respiratory quinone was Q-9, and the cellular fatty acids were primarily summed feature 3 (C16:1 ω6c/C16:1 ω7c), C16:0, and C18:1 ω9c. The major polar lipids were phosphatidylethanolamine, diphosphatidyl-glycerol, phosphatidylglycerol, and phosphatidyl-serine. The antimicrobial resistance profile of strain B301T revealed the absence of antibiotic-resistance genes. Susceptibility to a wide range of antimicrobials, including imipenem, minocycline, ampicillin, and tetracycline, was also observed. The results of the phenotypic, chemotaxonomic, and phylogenetic analyses indicate that strain B301T represents a novel species of the genus Acinetobacter, for which the name Acinetobacter pullorum sp. nov. is proposed. The type strain is B301T (=KACC 21653T = JCM 33942T).


Asunto(s)
Acinetobacter/clasificación , Filogenia , Aves de Corral/microbiología , Acinetobacter/citología , Acinetobacter/efectos de los fármacos , Acinetobacter/fisiología , Animales , Antibacterianos/farmacología , Composición de Base , Pollos , ADN Bacteriano/genética , Ácidos Grasos/química , Genes Bacterianos , Genoma Bacteriano , Pruebas de Sensibilidad Microbiana , Hibridación de Ácido Nucleico , Fosfolípidos/química , Quinonas/química , ARN Ribosómico 16S/genética , República de Corea , Análisis de Secuencia de ADN
3.
Arch Microbiol ; 202(2): 329-342, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31664492

RESUMEN

The aim of the present study was to reveal how different microbial communities evolve in diesel fuel/crude oil-contaminated environments under aerobic and microaerobic conditions. To investigate this question, aerobic and microaerobic bacterial enrichments amended with a diesel fuel/crude oil mixture were established and analysed. The representative aerobic enrichment community was dominated by Gammaproteobacteria (64.5%) with high an abundance of Betaproteobacteriales (36.5%), followed by Alphaproteobacteria (8.7%), Actinobacteria (5.6%), and Candidatus Saccharibacteria (4.5%). The most abundant alkane monooxygenase (alkB) genotypes in this enrichment could be linked to members of the genus Rhodococcus and to a novel Gammaproteobacterium, for which we generated a high-quality draft genome using genome-resolved metagenomics of the enrichment culture. Contrarily, in the microaerobic enrichment, Gammaproteobacteria (99%) overwhelmingly dominated the microbial community with a high abundance of the genera Acinetobacter (66.3%), Pseudomonas (11%) and Acidovorax (11%). Under microaerobic conditions, the vast majority of alkB gene sequences could be linked to Pseudomonas veronii. Consequently, results shed light on the fact that the excellent aliphatic hydrocarbon degrading Rhodococcus species favour clear aerobic conditions, while oxygen-limited conditions can facilitate the high abundance of Acinetobacter species in aliphatic hydrocarbon-contaminated subsurface environments.


Asunto(s)
Biodegradación Ambiental , Gasolina/microbiología , Hidrocarburos/metabolismo , Acinetobacter/clasificación , Acinetobacter/aislamiento & purificación , Acinetobacter/metabolismo , Actinobacteria/clasificación , Actinobacteria/aislamiento & purificación , Actinobacteria/metabolismo , Citocromo P-450 CYP4A/genética , Genotipo , Proteobacteria/clasificación , Proteobacteria/aislamiento & purificación , Proteobacteria/metabolismo , Pseudomonas/clasificación , Pseudomonas/aislamiento & purificación , Pseudomonas/metabolismo , Rhodococcus/clasificación , Rhodococcus/aislamiento & purificación , Rhodococcus/metabolismo
4.
Arch Microbiol ; 201(8): 1061-1073, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31123792

RESUMEN

Plants are colonized by diverse microorganisms that can substantially impact their health and growth. Understanding bacterial diversity and the relationships between bacteria and phytopathogens may be key to finding effective biocontrol agents. We evaluated the bacterial community associated with anthracnose symptomatic and asymptomatic leaves of guarana, a typical tropical crop. Bacterial communities were assessed through culture-independent techniques based on extensive 16S rRNA sequencing, and cultured bacterial strains were evaluated for their ability to inhibit the growth of Colletotrichum sp. as well as for enzyme and siderophore production. The culture-independent method revealed that Proteobacteria was the most abundant phylum, but many sequences were unclassified. The emergence of anthracnose disease did not significantly affect the bacterial community, but the abundance of the genera Acinetobacter, Pseudomonas and Klebsiella were significantly higher in the symptomatic leaves. In vitro growth of Colletotrichum sp. was inhibited by 11.38% of the cultured bacterial strains, and bacteria with the highest inhibition rates were isolated from symptomatic leaves, while asymptomatic leaves hosted significantly more bacteria that produced amylase and polygalacturonase. The bacterial isolate Bacillus sp. EpD2-5 demonstrated the highest inhibition rate against Colletotrichum sp., whereas the isolates EpD2-12 and FD5-12 from the same genus also had high inhibition rates. These isolates were also able to produce several hydrolytic enzymes and siderophores, indicating that they may be good candidates for the biocontrol of anthracnose. Our work demonstrated the importance of using a polyphasic approach to study microbial communities from plant diseases, and future work should focus on elucidating the roles of culture-independent bacterial communities in guarana anthracnose disease.


Asunto(s)
Antibiosis/fisiología , Agentes de Control Biológico/aislamiento & purificación , Colletotrichum/crecimiento & desarrollo , Paullinia/microbiología , Proteobacteria/aislamiento & purificación , Acinetobacter/clasificación , Acinetobacter/genética , Acinetobacter/aislamiento & purificación , Amilasas/metabolismo , Antracosis/microbiología , Bacillus/clasificación , Bacillus/genética , Bacillus/aislamiento & purificación , Klebsiella/clasificación , Klebsiella/genética , Klebsiella/aislamiento & purificación , Microbiota , Enfermedades de las Plantas/microbiología , Hojas de la Planta/microbiología , Poligalacturonasa/metabolismo , Proteobacteria/clasificación , Proteobacteria/genética , Pseudomonas/clasificación , Pseudomonas/genética , Pseudomonas/aislamiento & purificación , ARN Ribosómico 16S/genética , Bosque Lluvioso , Sideróforos/metabolismo
5.
Artículo en Inglés | MEDLINE | ID: mdl-30634699

RESUMEN

A crude oil-degrading bacterium named strain H9-3 was isolated from crude oil contaminated soil in the Northeastern area of China. Based on its morphological characteristics and 16S rDNA sequence analysis, strain H9-3 is affiliated to Acinetobacter pittii in the group of Gammaproteobacteria. The strain was efficient in removing 36.8% of the initial 10 g·L - 1 of crude oil within 21 days. GC-MS was performed and a preference was shown for n-C10, n-C11, i-C14, i-C17, i-C34, n-C12, n-C13, n-C14, n-C27, n-C32 and i-C13, over n-C16, n-C18⁻C22, n-C24⁻n-C31, and n-C36. This can be regarded as the specific fingerprint for crude oil degradation by strain H9-3 of Acinetobacter pittii. In addition to crude oil, it was shown that soybean oil and phenols can be utilized as carbon sources by strain H9-3. It was also shown that aniline and α -naphthol cannot be utilized for growth, but they can be tolerated by strain H9-3. Methylbenzene was neither utilized nor tolerated by strain H9-3. Although n-hexadecane was not preferentially consumed by strain H9-3, during culture with crude oil, it could be utilized for growth when it is the sole carbon source. The degradation of some branched alkanes (i-C14, i-C17 and i-C34) and the preferential degradation of crude oil over phenols could be used as a reference for distinguishing A. pittii from A. calcoaceticus. The difference in gene expression was very significant and was induced by diverse carbon sources, as shown in the qRT-PCR results. The oxidation and adhesion events occurred at high frequency during alkane degration by Acinetobacter pittii strain H9-3 cells.


Asunto(s)
Acinetobacter/genética , Acinetobacter/metabolismo , Alcanos/metabolismo , Regulación Bacteriana de la Expresión Génica , Petróleo/metabolismo , Acinetobacter/clasificación , Acinetobacter/aislamiento & purificación , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Biodegradación Ambiental , China , ADN Ribosómico/genética , Oxidorreductasas/genética , Oxidorreductasas/metabolismo , Petróleo/análisis
6.
J Basic Microbiol ; 59(3): 277-287, 2019 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-30614549

RESUMEN

Bioemulsifiers (BE) and biosurfactants (BS) are considered as multifunctional biomolecules of 21st century because of their functional abilities and eco-friendly properties. They are produced by various microorganisms under versatile and extreme environmental conditions. They have tremendous applications in various industries such as petroleum, food, medicine, pharmaceutical, chemical, paper & pulp, textile, and cosmetics. Currently, they are also considered as "green molecules" because of their wide applications in bioremediation of soil. Their importance has been increasing day by day in the global market as they are the natural resources with high-aggregate value. Although, there are numerous reports on BE and BS production by different bacteria, Acinetobacter spp. acquired special attention among all. This is because it is the earliest member known for the production of bioemulsifier. Emulsan and Alasan are the best examples of the commercially used BE produced by Acinetobacter spp. These BE are mainly used in microbial enhanced oil recovery and biodegradation of toxic compounds. This review is focused on BE and BS produced by Acinetobacter spp., their characterization and applications in different fields. This is the first review on genus Acinetobacter which defines independently about different types of BE and BS produced by it. It will also address the need of exploration of these molecules from various sources and their applications for the benefit of mankind and sustainable environment.


Asunto(s)
Acinetobacter/metabolismo , Emulsionantes/metabolismo , Tensoactivos/metabolismo , Acinetobacter/clasificación , Antiinfecciosos , Antineoplásicos , Biodegradación Ambiental , Agentes de Control Biológico , Detergentes , Emulsionantes/química , Emulsionantes/clasificación , Depuradores de Radicales Libres , Hidrocarburos/metabolismo , Petróleo/metabolismo , Tensoactivos/química , Tensoactivos/clasificación
7.
J Sci Food Agric ; 99(1): 219-225, 2019 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-29855042

RESUMEN

BACKGROUND: Excessive nitrite in food is potentially harmful to human health because of carcinogenic effects caused by its nitroso-derivatives. Douchi, which widely distributed throughout the country, is a traditional solid fermented soybean food with low nitrite content. RESULTS: In this study, bacteria which can degrade nitrite were isolated from Douchi and identified from their 16S rDNA sequences. Acinetobacter guillouiae, Acinetobacter bereziniae, Bacillus subtilis, Bacillus tequilensis, Bacillus amyloliquefaciens, Bacillus licheniformis, Bacillus aryabhattai and Bacillus methylotrophicus were selected. It was shown that all strains were able to degrade nitrite to some extent, including Bacillus subtilis NDS1, which was able to degrade 99.41% of nitrite. The enzyme activities of these strains were determined at 24 and 48 h and were shown to correspond with their nitrite degradation rates. The strains were used to inoculate Jiangshui, a kind of traditional fermented vegetable from northwest China that often has a high nitrite content. Of the strains tested, Bacillus subtilis NDS1, Bacillus tequilensis NDS3, Acinetobacter bereziniae NDS4, Bacillus subtilis NDS6, and Bacillus subtilis NDS12 were able to degrade nitrite in Jiangshui more rapidly, with Acinetobacter bereziniae NDS4 degrading almost all nitrite in 48 h compared with 180 h of control. CONCLUSION: These results indicate that the selected strains have potential to be used as nitrite-degrading agents in food. © 2018 Society of Chemical Industry.


Asunto(s)
Acinetobacter/aislamiento & purificación , Acinetobacter/metabolismo , Bacillus/aislamiento & purificación , Bacillus/metabolismo , Alimentos Fermentados/microbiología , Nitritos/metabolismo , Alimentos de Soja/microbiología , Acinetobacter/clasificación , Acinetobacter/genética , Bacillus/clasificación , Bacillus/genética , ADN Bacteriano/genética , Alimentos Fermentados/análisis , Filogenia , ARN Ribosómico 16S/genética , Alimentos de Soja/análisis , Verduras/química , Verduras/microbiología
9.
Vet Dermatol ; 29(3): 240-e87, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-29430818

RESUMEN

BACKGROUND: Acinetobacter species can exhibit widespread resistance to antimicrobial agents. They are already recognized as important nosocomial pathogens of humans, but are becoming increasingly recognized in opportunistic infections of animals. HYPOTHESIS/OBJECTIVES: This study aimed to determine whether Acinetobacter spp. are carried on skin of healthy dogs and, if present, to identify the species. ANIMALS: Forty dogs were sampled at veterinary practices and rescue centres. They were free from skin disease and receiving no systemic or topical treatments. METHODS: Skin swab samples were collected from four sites on each dog and cultured. Acinetobacter spp. isolates were detected by biochemical tests and gas chromatography. The species was determined by sequencing the RNA polymerase ß-subunit (rpoB) gene. Isolates were screened for OXA carbapenemase genes and class 1 integrons capable of carrying resistance genes, and subjected to antimicrobial susceptibility tests. RESULTS: For 25% dogs sampled (10 of 40), Acinetobacter spp. were isolated at one or more skin sites. Thirteen Acinetobacter spp. isolates were recovered from 160 samples. The most frequently cultured was A. lwoffii (seven of 13), followed by A. baumannii (two of 13), A. junii (one of 13), A. calcoaceticus (one of 13), A. pittii (one of 13) and a novel Acinetobacter species (one of 13). Class 1 integrons and blaOXA-23-like were not detected. Isolates were susceptible to most antibiotics. CONCLUSIONS AND CLINICAL IMPORTANCE: The study confirms that Acinetobacter spp. can survive on canine skin, where they may be potential reservoirs for infection. This highlights the importance of good hygiene in veterinary practice, adhering to aseptic principles in surgery, and treatment based on culture and susceptibility testing where possible.


Asunto(s)
Acinetobacter/clasificación , Acinetobacter/aislamiento & purificación , Perros/microbiología , Piel/microbiología , Infecciones por Acinetobacter/diagnóstico , Infecciones por Acinetobacter/microbiología , Infecciones por Acinetobacter/veterinaria , Animales , Antibacterianos/farmacología , Técnicas de Tipificación Bacteriana/veterinaria , Integrones , Pruebas de Sensibilidad Microbiana/veterinaria
10.
Microbiome ; 6(1): 5, 2018 01 05.
Artículo en Inglés | MEDLINE | ID: mdl-29304850

RESUMEN

BACKGROUND: Microorganisms have long been associated with oxic and anoxic degradation of hydrocarbons in oil reservoirs and oil production facilities. While we can readily determine the abundance of microorganisms in the reservoir and study their activity in the laboratory, it has been challenging to resolve what microbes are actively participating in crude oil degradation in situ and to gain insight into what metabolic pathways they deploy. RESULTS: Here, we describe the metabolic potential and in situ activity of microbial communities obtained from the Jiangsu Oil Reservoir (China) by an integrated metagenomics and metatranscriptomics approach. Almost complete genome sequences obtained by differential binning highlight the distinct capability of different community members to degrade hydrocarbons under oxic or anoxic condition. Transcriptomic data delineate active members of the community and give insights that Acinetobacter species completely oxidize alkanes into carbon dioxide with the involvement of oxygen, and Archaeoglobus species mainly ferment alkanes to generate acetate which could be consumed by Methanosaeta species. Furthermore, nutritional requirements based on amino acid and vitamin auxotrophies suggest a complex network of interactions and dependencies among active community members that go beyond classical syntrophic exchanges; this network defines community composition and microbial ecology in oil reservoirs undergoing secondary recovery. CONCLUSION: Our data expand current knowledge of the metabolic potential and role in hydrocarbon metabolism of individual members of thermophilic microbial communities from an oil reservoir. The study also reveals potential metabolic exchanges based on vitamin and amino acid auxotrophies indicating the presence of complex network of interactions between microbial taxa within the community.


Asunto(s)
Archaea/clasificación , Bacterias/clasificación , Perfilación de la Expresión Génica/métodos , Metagenómica/métodos , Yacimiento de Petróleo y Gas/microbiología , Acinetobacter/clasificación , Acinetobacter/genética , Acinetobacter/aislamiento & purificación , Archaea/genética , Archaea/aislamiento & purificación , Archaeoglobus/clasificación , Archaeoglobus/genética , Archaeoglobus/aislamiento & purificación , Bacterias/genética , Bacterias/aislamiento & purificación , Proteínas Bacterianas/genética , China , Redes y Vías Metabólicas , Methanosarcinales/clasificación , Methanosarcinales/genética , Methanosarcinales/aislamiento & purificación , Filogenia , Análisis de Secuencia de ADN , Análisis de Secuencia de ARN
11.
Colomb. med ; 48(4): 183-190, Oct.-Dec. 2017. tab, graf
Artículo en Inglés | LILACS | ID: biblio-890877

RESUMEN

Abstract Introduction: The extensive use of antibiotics has led to the emergence of multi-resistant strains in some species of the genus Acinetobacter. Objective: To investigate the molecular characteristics of multidrug-resistant of Acinetobacter ssp. strains isolated from 52 patients collected between March 2009 and July 2010 in medical intensive care units in Cali - Colombia. Methods: The susceptibility to various classes of antibiotics was determined by disc diffusion method, and the determination of the genomic species was carried out using amplified ribosomal DNA restriction analysis (ARDRA) and by sequencing of the 16s rDNA gene. Also, the genes of beta-lactamases as well as, integrases IntI1 and IntI2 were analyzed by PCR method. Results: The phenotypic identification showed that the isolates belong mainly to A. calcoaceticus- A. baumannii complex. All of them were multi-resistant to almost the whole antibiotics except to tigecycline and sulperazon, and they were grouped into five (I to V) different antibiotypes, being the antibiotype I the most common (50.0%). The percent of beta-lactamases detected was: blaTEM (17.3%), blaCTX-M (9.6%), blaVIM (21.2%), blaIMP (7.7%), blaOXA-58 (21.2%), and blaOXA-51 (21.2%). The phylogenetic tree analysis showed that the isolates were clustering to A. baumannii (74.1%), A. nosocomialis (11.1%) and A. calcoaceticus (7.4 %). Besides, the integron class 1 and class 2 were detected in 23.1% and 17.3% respectively. Conclusion: The isolates were identified to species A. baumanii mainly, and they were multiresistant. The resistance to beta-lactams may be by for presence of beta-lactamases in the majority of the isolates.


Resumen Introducción: El uso extensivo de antibióticos ha llevado a la emergencia de cepas multirresistentes en algunas especies del género Acinetobacter. Objetivo: Investigar las características moleculares de resistencia a múltiples fármacos de cepas aisladas de Acinetobacter spp. colectadas entre marzo de 2009 y julio de 2010 en 52 pacientes de unidades de cuidados intensivos en Cali - Colombia. Métodos: La susceptibilidad a diversas clases de antibióticos se determinó mediante el método de difusión de disco, y la determinación de la especie genómica se llevó a cabo usando un análisis de restricción de ADN ribosómico amplificado (ARDRA) y mediante la secuenciación del gen 16s de ADNr. Además, se analizaron por el método de PCR los genes de las beta-lactamasas, como también, las integrasas IntI1 e IntI2. Resultados: La identificación fenotípica mostró que los aislamientos pertenecen principalmente al complejo A. calcoaceticus - A. baumannii. Todos ellos eran multirresistentes a casi todos los antibióticos excepto tigeciclina y sulperazón, y se agruparon en cinco (I a V) antibitipos diferentes, siendo el antibiotipo I el más común (50%). El porcentaje de betalactamasas detectadas fue: blaTEM (17,3%), blaCTX-M (9,6%), blaVIM (21,2%), blaIMP (7,7%), blaOXA-58 (21,2%), blaOXA- 51 (21.2%). El análisis del árbol filogenético mostró que los aislados se agrupaban en A. baumannii (74.1%), A. nosocomialis (11.1%) y A. calcoaceticus (7.4%). Además, el integrón clase 1 y clase 2 se detectaron en 23.1% y 17.3% respectivamente. Conclusión: los aislamientos se identificaron principalmente como la especie A. baumanii, y fueron multirresistentes. La resistencia a los betalactámicos puede deberse a la presencia de betalactamasas en la mayoría de los aislamientos.


Asunto(s)
Humanos , Acinetobacter/efectos de los fármacos , beta-Lactamasas/genética , Infecciones por Acinetobacter/tratamiento farmacológico , Antibacterianos/farmacología , Acinetobacter/clasificación , Acinetobacter/genética , Infecciones por Acinetobacter/microbiología , Infecciones por Acinetobacter/epidemiología , ADN Bacteriano/genética , ADN Ribosómico/genética , Reacción en Cadena de la Polimerasa/métodos , Colombia , Farmacorresistencia Bacteriana Múltiple , Pruebas Antimicrobianas de Difusión por Disco , Unidades de Cuidados Intensivos
12.
Mem. Inst. Oswaldo Cruz ; 112(10): 723-727, Oct. 2017. tab, graf
Artículo en Inglés | LILACS | ID: biblio-1040561

RESUMEN

The development of carbapenem-resistant Acinetobacter species is of serious concern in the hospital settings and naturally occurring oxacillinase genes (blaOXA) have been identified in several Acinetobacter species. In this study, we report the genome sequence of A. pittii TCM178 belongs to ST950, a multidrug-resistant isolate that harbored the blaOXA-72 and blaOXA-533 genes simultaneous. The genome size was estimated to be 3,789,564 bp with 3,501 predicted coding regions, and G+C content is 37.60%. Our findings have raised awareness of the possible constitution of a reservoir for peculiar carbapenemase genes in A. pittii that may spread among other Acinetobacter species in China.


Asunto(s)
Humanos , Proteínas Bacterianas/genética , Acinetobacter/efectos de los fármacos , Acinetobacter/enzimología , beta-Lactamasas/genética , Genoma Bacteriano/genética , Farmacorresistencia Bacteriana Múltiple/genética , Acinetobacter/clasificación , Secuencia de Bases , China , Análisis de Secuencia de ADN
13.
Mem Inst Oswaldo Cruz ; 111(9): 592-3, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27653362

RESUMEN

Acinetobacter pittii has emerged as an important hospital pathogen that is associated with outbreaks and drug resistance. In cystic fibrosis (CF) patients, the detection of Acinetobacter spp. is rare; however, we isolated the A. pittii sequence type ST643 in several Brazilian CF patients treated in the same centre. The current study describes the draft genome of A. pittii ST643.


Asunto(s)
Infecciones por Acinetobacter/microbiología , Acinetobacter/genética , Fibrosis Quística/microbiología , Acinetobacter/clasificación , ADN Bacteriano/genética , Genoma Bacteriano , Humanos , Tipificación de Secuencias Multilocus , Reacción en Cadena de la Polimerasa
14.
Mem. Inst. Oswaldo Cruz ; 111(9): 592-593, Sept. 2016.
Artículo en Inglés | LILACS | ID: lil-794730

RESUMEN

Acinetobacter pittii has emerged as an important hospital pathogen that is associated with outbreaks and drug resistance. In cystic fibrosis (CF) patients, the detection of Acinetobacter spp. is rare; however, we isolated the A. pittii sequence type ST643 in several Brazilian CF patients treated in the same centre. The current study describes the draft genome of A. pittii ST643.


Asunto(s)
Humanos , Infecciones por Acinetobacter/microbiología , Acinetobacter/genética , Fibrosis Quística/microbiología , Acinetobacter/clasificación , ADN Bacteriano/genética , Genoma Bacteriano , Tipificación de Secuencias Multilocus , Reacción en Cadena de la Polimerasa
15.
Rev. Soc. Bras. Med. Trop ; 49(3): 300-304, tab, graf
Artículo en Inglés | LILACS | ID: lil-785786

RESUMEN

Abstract: Introduction: The drug resistant Acinetobacter strains are important causes of nosocomial infections that are difficult to control and treat. This study aimed to determine the antimicrobial susceptibility patterns of Acinetobacter strains isolated from different clinical specimens obtained from patients belonging to different age groups. METHODS: In total, 716 non-duplicate Acinetobacter isolates were collected from the infected patients admitted to tertiary-care hospitals at Lahore, Pakistan, over a period of 28 months. The Acinetobacter isolates were identified using API 20E, and antimicrobial susceptibility testing was performed and interpreted according to Clinical and Laboratory Standards Institute (CLSI) guidelines. RESULTS: The isolation rate of Acinetobacter was high from the respiratory specimens, followed by wound samples. Antibiotic susceptibility analyses of the isolates revealed that the resistance to cefotaxime and ceftazidime was the most common, in 710 (99.2%) specimens each, followed by the resistance to gentamicin in 670 (93.6%) isolates, and to imipenem in 651 (90.9%) isolates. However, almost all isolates were susceptible to tigecycline, colistin, and polymyxin B. CONCLUSIONS: The present study showed the alarming trends of resistance of Acinetobacter strains isolated from clinical specimens to the various classes of antimicrobials. The improvement of microbiological techniques for earlier and more accurate identification of bacteria is necessary for the selection of appropriate treatments.


Asunto(s)
Humanos , Acinetobacter/efectos de los fármacos , Infecciones por Acinetobacter/microbiología , Infección Hospitalaria/microbiología , Antibacterianos/farmacología , Acinetobacter/clasificación , Pruebas de Sensibilidad Microbiana , Distribución por Edad
16.
Antimicrob Agents Chemother ; 60(1): 64-74, 2016 01.
Artículo en Inglés | MEDLINE | ID: mdl-26459905

RESUMEN

Antimicrobial resistance is a global issue currently resulting in the deaths of hundreds of thousands of people a year worldwide. Data present in the literature illustrate the emergence of many bacterial species that display resistance to known antibiotics; Acinetobacter spp. are a good example of this. We report here that Acinetobacter radioresistens has a Baeyer-Villiger monooxygenase (Ar-BVMO) with 100% amino acid sequence identity to the ethionamide monooxygenase of multidrug-resistant (MDR) Acinetobacter baumannii. Both enzymes are only distantly phylogenetically related to other canonical bacterial BVMO proteins. Ar-BVMO not only is capable of oxidizing two anticancer drugs metabolized by human FMO3, danusertib and tozasertib, but also can oxidize other synthetic drugs, such as imipenem. The latter is a member of the carbapenems, a clinically important antibiotic family used in the treatment of MDR bacterial infections. Susceptibility tests performed by the Kirby-Bauer disk diffusion method demonstrate that imipenem-sensitive Escherichia coli BL21 cells overexpressing Ar-BVMO become resistant to this antibiotic. An agar disk diffusion assay proved that when imipenem reacts with Ar-BVMO, it loses its antibiotic property. Moreover, an NADPH consumption assay with the purified Ar-BVMO demonstrates that this antibiotic is indeed a substrate, and its product is identified by liquid chromatography-mass spectrometry to be a Baeyer-Villiger (BV) oxidation product of the carbonyl moiety of the ß-lactam ring. This is the first report of an antibiotic-inactivating BVMO enzyme that, while mediating its usual BV oxidation, also operates by an unprecedented mechanism of carbapenem resistance.


Asunto(s)
Acinetobacter/enzimología , Antibacterianos/metabolismo , Farmacorresistencia Bacteriana Múltiple/genética , Escherichia coli/genética , Imipenem/metabolismo , Acinetobacter/clasificación , Acinetobacter/efectos de los fármacos , Acinetobacter/genética , Antibacterianos/farmacología , Antineoplásicos/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Benzamidas/metabolismo , Biotransformación , Clonación Molecular , Pruebas Antimicrobianas de Difusión por Disco , Escherichia coli/clasificación , Escherichia coli/efectos de los fármacos , Escherichia coli/enzimología , Expresión Génica , Imipenem/farmacología , Ingeniería Metabólica , Oxigenasas de Función Mixta/genética , Oxigenasas de Función Mixta/metabolismo , NADP/metabolismo , Oxidación-Reducción , Filogenia , Piperazinas/metabolismo , Pirazoles/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
17.
Izv Akad Nauk Ser Biol ; (3): 272-7, 2015.
Artículo en Ruso | MEDLINE | ID: mdl-26349232

RESUMEN

Species classification of a strain of the bacterium oil-destructor Acinetobacter sp. I B DT-5.1/l is established by means of gas chromatography-mass spectrometry fatty acid methyl esters in the cell wall and matrix-assisted laser desorption/ionization (MALDI) mass spectrometry of proteins of a cell.


Asunto(s)
Acinetobacter/clasificación , Proteínas Bacterianas/metabolismo , Ácidos Grasos/metabolismo , Acinetobacter/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
18.
Clinics ; 70(2): 87-90, 2/2015. tab
Artículo en Inglés | LILACS | ID: lil-741428

RESUMEN

OBJECTIVES: To investigate the prevalence of excess body weight in the pediatric ward of University Hospital and to test both the association between initial nutritional diagnosis and the length of stay and the in-hospital variation in nutritional status. METHODS: Retrospective cohort study based on information entered in clinical records from University Hospital. The data were collected from a convenience sample of 91 cases among children aged one to 10 years admitted to the hospital in 2009. The data that characterize the sample are presented in a descriptive manner. Additionally, we performed a multivariate linear regression analysis adjusted for age and gender. RESULTS: Nutritional classification at baseline showed that 87.8% of the children had a normal weight and that 8.9% had excess weight. The linear regression models showed that the average weight loss z-score of the children with excess weight compared with the group with normal weight was −0.48 (p = 0.018) and that their length of stay was 2.37 days longer on average compared with that of the normal-weight group (p = 0.047). CONCLUSIONS: The length of stay and loss of weight at the hospital may be greater among children with excess weight than among children with normal weight. .


Asunto(s)
Acinetobacter/genética , Técnicas de Tipificación Bacteriana/métodos , ADN Espaciador Ribosómico/genética , Reacción en Cadena de la Polimerasa , /genética , /genética , Acinetobacter/clasificación , Filogenia
19.
J Clin Microbiol ; 53(1): 349-51, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25392359

RESUMEN

A taxonomically unique bacterial strain, Acinetobacter sp. A47, has been recovered from several soft tissue samples from a patient undergoing reconstructive surgery owing to a traumatic amputation. The results of 16S rRNA, rpoB, and gyrB gene comparative sequence analyses showed that A47 does not belong to any of the hitherto-known taxa and may represent an as-yet-unknown Acinetobacter species. The recognition of this novel organism contributes to our knowledge of the taxonomic complexity underlying infections caused by Acinetobacter.


Asunto(s)
Infecciones por Acinetobacter , Acinetobacter/genética , Traumatismos de los Tejidos Blandos , Acinetobacter/clasificación , Acinetobacter/fisiología , Infecciones por Acinetobacter/diagnóstico , Infecciones por Acinetobacter/microbiología , ADN Bacteriano/análisis , ADN Bacteriano/genética , Femenino , Genes Bacterianos/genética , Humanos , Persona de Mediana Edad , Datos de Secuencia Molecular , Fenotipo , Traumatismos de los Tejidos Blandos/diagnóstico , Traumatismos de los Tejidos Blandos/microbiología
20.
BMC Infect Dis ; 13: 311, 2013 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-23841753

RESUMEN

BACKGROUND: It is unknown whether there are differences between bacteremia caused by carbapenem resistant Acinetobacter baumannii (CRAB) and carbapenem resistant Acinetobacter nosocomialis (CRAN). This study aims to investigate the differences, especially in clinical outcomes, between patients with bacteremia caused by CRAB or CRAN. METHODS: This is a 9-year retrospective study comparing the clinical manifestations, antimicrobial susceptibilities, and clinical outcomes of 71 patients with CRAB bacteremia and 64 patients with CRAN bacteremia. RESULTS: Patients with CRAB were more likely to have hematologic malignancies and presented with more shock episodes than those with CRAN. CRAB isolates were more resistant to various classes of antimicrobials except colistin, and therefore the patients with CRAB bacteremia were more likely to receive inappropriate antimicrobial therapies. The 14-day mortality was significantly higher in patients with CRAB (40.8% vs. 14.1%; p = 0.001), and in this study, acquisition of CRAB was identified as an independent risk factor for mortality (odds ratio = 4.003; 95% confidence interval = 1.566-10.231; p = 0.004). CONCLUSIONS: CRAB and CRAN bacteremia are different in clinical characteristics, antimicrobial susceptibilities, and mortality rates. Genomic species identification should be performed in the study of carbapenem resistant Acinetobacters to better delineate the role of different species.


Asunto(s)
Infecciones por Acinetobacter/microbiología , Acinetobacter/clasificación , Bacteriemia/microbiología , Carbapenémicos/farmacología , Acinetobacter/efectos de los fármacos , Acinetobacter/aislamiento & purificación , Infecciones por Acinetobacter/epidemiología , Acinetobacter baumannii/efectos de los fármacos , Acinetobacter baumannii/aislamiento & purificación , Anciano , Anciano de 80 o más Años , Antibacterianos/farmacología , Bacteriemia/epidemiología , Femenino , Humanos , Estimación de Kaplan-Meier , Masculino , Pruebas de Sensibilidad Microbiana , Estudios Retrospectivos , Factores de Riesgo , Estadísticas no Paramétricas , Resistencia betalactámica
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