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1.
Eur J Med Chem ; 267: 116178, 2024 Mar 05.
Artículo en Inglés | MEDLINE | ID: mdl-38295686

RESUMEN

Cathepsin D (CD) is overexpressed in several types of cancer and constitutes an important biological target. Pepstatin A, a pentapeptide incorporating two non-proteinogenic statin residues, is among the most potent inhibitor of CD but lacks selectivity and suffers from poor bioavailability. Eight analogues of Pepstatin A, were synthesized, replacing residues in P3 or P1 position by non-canonical (S)- and (R)-α-Trifluoromethyl Alanine (TfmAla), (S)- and (R)-Trifluoromethionine (TFM) or non-natural d-Valine. The biological activities of those analogues were quantified on isolated CD and Pepsin by fluorescence-based assay (FRET) and cytotoxicity of the best fluorinated inhibitors was evaluated on SKOV3 ovarian cancer cell line. (R)-TFM based analog of Pepstatin A (compound 6) returned a sub-nanomolar IC50 against CD and an increased selectivity. Molecular Docking experiments could partially rationalize these results. Stabilized inhibitor 6 in the catalytic pocket of CD showed strong hydrophobic interactions of the long and flexible TFM side chain with lipophilic residues of S1 and S3 sub-pockets of the catalytic pocket. The newly synthesized inhibitors returned no cytotoxicity at IC50 concentrations on SKOV3 cancer cells, however the compounds derived from (S)-TfmAla and (R)-TFM led to modifications of cells morphologies, associated with altered organization of F-actin and extracellular Fibronectin.


Asunto(s)
Catepsina D , Metionina/análogos & derivados , Pepsina A , Pepstatinas/farmacología , Pepstatinas/química , Simulación del Acoplamiento Molecular , Alanina
2.
Eur J Mass Spectrom (Chichester) ; 29(5-6): 303-312, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37259551

RESUMEN

Pepsin, because of its optimal activity at low acidic pH, has gained importance in mass spectrometric proteome research as a readily available and easy-to-handle protease. Pepsin has also been study object of protein higher-order structure analyses, but questions about how to best investigate pepsin in-solution conformers still remain. We first determined dependencies of pepsin ion charge structures on solvent pH which indicated the in-solution existence of (a) natively folded pepsin (N) which by nanoESI-MS analysis gave rise to a narrow charge state distribution with an 11-fold protonated most intense ion signal, (b) unfolded pepsin (U) with a rather broad ion charge state distribution whose highest ion signal carried 25 protons, and (c) a compactly folded pepsin conformer (C) with a narrow charge structure and a 12-fold protonated ion signal in the center of its charge state envelope. Because pepsin is a protease, unfolded pepsin became its own substrate in solution at pH 6.6 since at this pH some portion of pepsin maintained a compact/native fold which displayed enzymatic activity. Subsequent mass spectrometric ITEM-TWO analyses of pepstatin A - pepsin complex dissociation reactions in the gas phase confirmed a very strong binding of pepstatin A by natively folded pepsin (N). ITEM-TWO further revealed the existence of two compactly folded in-solution pepsin conformers (Ca and Cb) which also were able to bind pepstatin A. Binding strengths of the respective compactly folded pepsin conformer-containing complexes could be determined and apparent gas phase complex dissociation constants and reaction enthalpies differentiated these from each other and from the pepstatin A - pepsin complex which had been formed from natively folded pepsin. Thus, ITEM-TWO turned out to be well suited to pinpoint in-solution pepsin conformers by interrogating quantitative traits of pepstatin A - pepsin complexes in the gas phase.


Asunto(s)
Pepsina A , Espectrometría de Masa por Ionización de Electrospray , Pepsina A/química , Pepsina A/metabolismo , Pepstatinas/química , Espectrometría de Masa por Ionización de Electrospray/métodos
3.
ACS Chem Biol ; 18(4): 686-692, 2023 04 21.
Artículo en Inglés | MEDLINE | ID: mdl-36920024

RESUMEN

Aspartic proteases are a small class of proteases implicated in a wide variety of human diseases. Covalent chemical probes for photoaffinity labeling (PAL) of these proteases are underdeveloped. We here report a full on-resin synthesis of clickable PAL probes based on the natural product inhibitor pepstatin incorporating a minimal diazirine reactive group. The position of this group in the inhibitor determines the labeling efficiency. The most effective probes sensitively detect cathepsin D, a biomarker for breast cancer, in cell lysates. Moreover, through chemical proteomics experiments and deep learning algorithms, we identified sequestosome-1, an important player in autophagy, as a direct interaction partner and substrate of cathepsin D.


Asunto(s)
Ácido Aspártico Endopeptidasas , Catepsina D , Pepstatinas , Etiquetas de Fotoafinidad , Humanos , Ácido Aspártico Endopeptidasas/química , Catepsina D/química , Diazometano , Pepstatinas/química , Pepstatinas/farmacología , Etiquetas de Fotoafinidad/química , Proteína Sequestosoma-1/química
4.
J Med Chem ; 63(4): 1576-1596, 2020 02 27.
Artículo en Inglés | MEDLINE | ID: mdl-32003991

RESUMEN

Human cathepsin D (CatD), a pepsin-family aspartic protease, plays an important role in tumor progression and metastasis. Here, we report the development of biomimetic inhibitors of CatD as novel tools for regulation of this therapeutic target. We designed a macrocyclic scaffold to mimic the spatial conformation of the minimal pseudo-dipeptide binding motif of pepstatin A, a microbial oligopeptide inhibitor, in the CatD active site. A library of more than 30 macrocyclic peptidomimetic inhibitors was employed for scaffold optimization, mapping of subsite interactions, and profiling of inhibitor selectivity. Furthermore, we solved high-resolution crystal structures of three macrocyclic inhibitors with low nanomolar or subnanomolar potency in complex with CatD and determined their binding mode using quantum chemical calculations. The study provides a new structural template and functional profile that can be exploited for design of potential chemotherapeutics that specifically inhibit CatD and related aspartic proteases.


Asunto(s)
Catepsina D/antagonistas & inhibidores , Catepsina D/metabolismo , Péptidos Cíclicos/química , Péptidos Cíclicos/metabolismo , Inhibidores de Proteasas/química , Inhibidores de Proteasas/metabolismo , Sitios de Unión , Materiales Biomiméticos/síntesis química , Materiales Biomiméticos/química , Materiales Biomiméticos/metabolismo , Materiales Biomiméticos/toxicidad , Células CACO-2 , Catepsina D/química , Pruebas de Enzimas , Humanos , Cinética , Estructura Molecular , Pepstatinas/química , Péptidos Cíclicos/síntesis química , Péptidos Cíclicos/toxicidad , Inhibidores de Proteasas/síntesis química , Inhibidores de Proteasas/toxicidad , Unión Proteica , Relación Estructura-Actividad
5.
Int J Biol Macromol ; 139: 199-212, 2019 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-31374272

RESUMEN

In the pursuit of industrial aspartic proteases, aspergillopepsin A-like endopeptidase from the fungi Aspergillus niger, was identified and cultured by solid state fermentation. Conventional chromatographic techniques were employed to purify the extracellular aspartic protease to apparent homogeneity. The enzyme was found to have single polypeptide chain with a molecular mass of 50 ±â€¯0.5 kDa. The optimum pH and temperature for the purified aspartic protease was found to be 3.5 and 60 °C respectively. The enzyme was stable for 60 min at 50 °C. The purified enzyme had specific activity of 40,000 ±â€¯1800 U/mg. The enzyme had 85% homology with the reported aspergillopepsin A-like aspartic endopeptidase from Aspergillus niger CBS 513.88, based on tryptic digestion and peptide analysis. Pepstatin A reversibly inhibited the enzyme with a Ki value of 0.045 µM. Based on homology modeling and predicted secondary structure, it was inferred that the aspartic protease is rich in ß-structures, which was also confirmed by CD measurements. Interaction of pepstatin A with the enzyme did not affect the conformation of the enzyme as evidenced by CD and fluorescence measurements. Degree of hydrolysis of commercial substrates indicated the order of cleaving ability of the enzyme to be hemoglobin > defatted soya flour > gluten > gelatin > skim milk powder. The enzyme also improved the functional characteristics of defatted soya flour. This aspartic protease was found to be an excellent candidate for genetic manipulation for biotechnological application in food and feed industries, due to its high catalytic turn over number and thermostability.


Asunto(s)
Proteasas de Ácido Aspártico/química , Aspergillus niger/enzimología , Pepstatinas/química , Inhibidores de Proteasas/química , Proteasas de Ácido Aspártico/antagonistas & inhibidores , Proteasas de Ácido Aspártico/aislamiento & purificación , Proteasas de Ácido Aspártico/metabolismo , Aspergillus niger/clasificación , Aspergillus niger/genética , Catálisis , Cromatografía Liquida , Estabilidad de Enzimas , Concentración de Iones de Hidrógeno , Hidrólisis , Peso Molecular , Pepstatinas/farmacología , Filogenia , Inhibidores de Proteasas/farmacología , Unión Proteica , Relación Estructura-Actividad , Espectrometría de Masas en Tándem , Temperatura
6.
Molecules ; 24(2)2019 Jan 17.
Artículo en Inglés | MEDLINE | ID: mdl-30658511

RESUMEN

(1) Background: Nanomedicine has recently emerged as a new area of research, particularly to fight cancer. In this field, we were interested in the vectorization of pepstatin A, a peptide which does not cross cell membranes, but which is a potent inhibitor of cathepsin D, an aspartic protease particularly overexpressed in breast cancer. (2) Methods: We studied two kinds of nanoparticles. For pepstatin A delivery, mesoporous silica nanoparticles with large pores (LPMSNs) and hollow organosilica nanoparticles (HOSNPs) obtained through the sol⁻gel procedure were used. The nanoparticles were loaded with pepstatin A, and then the nanoparticles were incubated with cancer cells. (3) Results: LPMSNs were monodisperse with 100 nm diameter. HOSNPs were more polydisperse with diameters below 100 nm. Good loading capacities were obtained for both types of nanoparticles. The nanoparticles were endocytosed in cancer cells, and HOSNPs led to the best results for cancer cell killing. (4) Conclusions: Mesoporous silica-based nanoparticles with large pores or cavities are promising for nanomedicine applications with peptides.


Asunto(s)
Neoplasias de la Mama/metabolismo , Sistemas de Liberación de Medicamentos , Nanopartículas/química , Pepstatinas/administración & dosificación , Dióxido de Silicio/química , Línea Celular Tumoral , Femenino , Humanos , Nanopartículas/ultraestructura , Pepstatinas/química , Porosidad
7.
Future Med Chem ; 10(1): 5-26, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29235371

RESUMEN

AIM: Cathepsin D, one of the attractive targets in the treatment of breast cancer, has been implicated in HIV neuropathogenesis with potential proteolytic effects on chemokines. Methodology/result: Diverse modeling tools were used to reveal the key structural features affecting the inhibitory activities of 78 pepstatin A analogs. Analyses were performed to investigate the stability, rationality and fluctuation of the analogs. Results showed a clear correlation between the experimental and predicted activities of the analogs as well as the variation in their activities relative to structural modifications. CONCLUSION: The insight gained from this study offers theoretical references for understanding the mechanism of action of cathepsin D and will aid in the design of more potent and clinically-relevant drugs. Graphical abstract [Formula: see text].


Asunto(s)
Catepsina D/antagonistas & inhibidores , Pepstatinas/farmacología , Inhibidores de Proteasas/farmacología , Relación Estructura-Actividad Cuantitativa , Catepsina D/metabolismo , Relación Dosis-Respuesta a Droga , Humanos , Modelos Moleculares , Estructura Molecular , Pepstatinas/síntesis química , Pepstatinas/química , Inhibidores de Proteasas/síntesis química , Inhibidores de Proteasas/química , Relación Estructura-Actividad
8.
Biochem Biophys Res Commun ; 482(4): 678-685, 2017 Jan 22.
Artículo en Inglés | MEDLINE | ID: mdl-27865837

RESUMEN

Autophagy is believed to play an important role in maintaining homeostasis in pancreatic ß-cells during insulin resistance. This study investigated the role of autophagy in ß-cell damage induced by cholesterol and its possible activation mechanism. Rat and mouse pancreatic ß-cell lines INS-1 and ßTC-6 were incubated with cholesterol alone or in combination with autophagy inhibitors E-64d/Pepstatin A or bafilomycin A1. DAPI staining, western blotting, transmission electron microscopy and immunofluorescence were conducted to assess the effects of autophagy inhibitors on cholesterol-induced apoptosis and autophagy activity. An increase in FITC-LC3 fluorescence dots, autophagic vacuoles and LC3-II protein indicated that autophagy was activated in cells treated with cholesterol. This was further confirmed by blocking the natural turnover processes in lysosomes and autolysosomes with autophagy inhibitors, suggesting enhanced autophagic activity rather than blockage of autophagy. Furthermore, inhibition of autophagy significantly augmented the activation of caspase 3 and the percentage of cholesterol-induced apoptotic nuclei. These results demonstrate that autophagy plays a protective role against cholesterol-induced apoptosis in pancreatic ß-cells.


Asunto(s)
Apoptosis , Autofagia , Colesterol/química , Células Secretoras de Insulina/metabolismo , Animales , Caspasa 3/metabolismo , Supervivencia Celular/efectos de los fármacos , Colorantes Fluorescentes/química , Homeostasis , Resistencia a la Insulina , Células Secretoras de Insulina/citología , Insulinoma/metabolismo , Macrólidos/química , Ratones , Microscopía Electrónica de Transmisión , Proteínas Asociadas a Microtúbulos/metabolismo , Pepstatinas/química , Ratas , Serina-Treonina Quinasas TOR/metabolismo
9.
Acta Crystallogr F Struct Biol Commun ; 72(Pt 1): 24-8, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26750480

RESUMEN

Nepenthesins are aspartic proteases secreted by carnivorous pitcher plants of the genus Nepenthes. They significantly differ in sequence from other plant aspartic proteases. This difference, which provides more cysteine residues in the structure of nepenthesins, may contribute to their unique stability profile. Recombinantly produced nepenthesin 1 (rNep1) from N. gracilis in complex with pepstatin A was crystallized under two different crystallization conditions using a newly formulated low-pH crystallization screen. The diffraction data were processed to 2.9 and 2.8 Šresolution, respectively. The crystals belonged to space group P212121, with unit-cell parameters a = 86.63, b = 95.90, c = 105.40 Å, α = ß = γ = 90° and a = 86.28, b = 97.22, c = 103.78 Å, α = ß = γ = 90°, respectively. Matthews coefficient and solvent-content calculations suggest the presence of two molecules of rNep1 in the asymmetric unit. Here, the details of the crystallization experiment and analysis of the X-ray data are reported.


Asunto(s)
Ácido Aspártico Endopeptidasas/química , Proteínas de Plantas/química , Cristalización , Cristalografía por Rayos X , Concentración de Iones de Hidrógeno , Magnoliopsida/enzimología , Pepstatinas/química
10.
ChemMedChem ; 11(3): 302-8, 2016 Feb 04.
Artículo en Inglés | MEDLINE | ID: mdl-26639308

RESUMEN

Cathepsin D (CathD) is overexpressed and secreted by several solid tumors and stimulates their growth, the mechanism of which is still not understood. In this context, the pepstatin bioconjugate JMV4463 [Ac-arg-O2 Oc-(Val)3-Sta-Ala-Sta-(AMPA)4-NH2; O2 Oc=8-amino-3,6-dioxaoctanoyl, Sta=statine, AMPA=ortho-aminomethylphenylacetyl], containing a new kind of cell-penetrating vector, was previously shown to exhibit potent antiproliferative effects in vitro and to delay the onset of tumors in vivo. In this study, we performed a structure-activity relationship analysis to evaluate the significance of the inhibitor and vector moieties of JMV4463. By modifying both statine residues of pepstatin we found that the antiproliferative activity is correlated with CathD inhibition, supporting a major role of the catalytic activity of intracellular CathD in cancer cell proliferation. Replacing the vector composed of four AMPA units with other vectors was found to abolish cytotoxicity, although all of the conjugates enabled pepstatin transport into cells. In addition, the AMPA4 vector must be localized at the C terminus of the bioconjugate. The unexpected importance of the vector structure and position for cytotoxic action suggests that AMPA4 enables pepstatin to inhibit the proteolysis of critical CathD substrates involved in cell proliferation via a unique mechanism of action.


Asunto(s)
Aminoácidos Aromáticos/farmacología , Antineoplásicos/farmacología , Catepsina D/antagonistas & inhibidores , Pepstatinas/farmacología , Inhibidores de Proteasas/farmacología , Aminoácidos Aromáticos/química , Antineoplásicos/química , Proliferación Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Ensayos de Selección de Medicamentos Antitumorales , Humanos , Conformación Molecular , Pepstatinas/química , Inhibidores de Proteasas/química , Relación Estructura-Actividad , Células Tumorales Cultivadas
11.
PLoS One ; 10(4): e0123841, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25875018

RESUMEN

Scorpions are among the oldest terrestrial arthropods and they have passed through small morphological changes during their evolutionary history on land. They are efficient predators capable of capturing and consuming large preys and due to envenomation these animals can become a human health challenge. Understanding the physiology of scorpions can not only lead to evolutionary insights but also is a crucial step in the development of control strategies. However, the digestive process in scorpions has been scarcely studied. In this work, we describe the combinatory use of next generation sequencing, proteomic analysis and biochemical assays in order to investigate the digestive process in the yellow scorpion Tityus serrulatus, mainly focusing in the initial protein digestion. The transcriptome generated database allowed the quantitative identification by mass spectrometry of different enzymes and proteins involved in digestion. All the results suggested that cysteine cathepsins play an important role in protein digestion. Two digestive cysteine cathepsins were isolated and characterized presenting acidic characteristics (pH optima and stability), zymogen conversion to the mature form after acidic activation and a cross-class inhibition by pepstatin. A more elucidative picture of the molecular mechanism of digestion in a scorpion was proposed based on our results from Tityus serrulatus. The midgut and midgut glands (MMG) are composed by secretory and digestive cells. In fasting animals, the secretory granules are ready for the next predation event, containing enzymes needed for alkaline extra-oral digestion which will compose the digestive fluid, such as trypsins, astacins and chitinase. The digestive vacuoles are filled with an acidic proteolytic cocktail to the intracellular digestion composed by cathepsins L, B, F, D and legumain. Other proteins as lipases, carbohydrases, ctenitoxins and a chitolectin with a perithrophin domain were also detected. Evolutionarily, a large gene duplication of cathepsin L occurred in Arachnida with the sequences from ticks being completely divergent from other arachnids probably due to the particular selective pressures over this group.


Asunto(s)
Proteínas de Artrópodos/genética , Catepsinas/genética , Digestión/genética , Proteoma/genética , Escorpiones/genética , Transcriptoma , Animales , Proteínas de Artrópodos/metabolismo , Evolución Biológica , Catepsinas/antagonistas & inhibidores , Catepsinas/metabolismo , Quitinasas/genética , Quitinasas/metabolismo , Cisteína Endopeptidasas/genética , Cisteína Endopeptidasas/metabolismo , Estabilidad de Enzimas , Femenino , Duplicación de Gen , Secuenciación de Nucleótidos de Alto Rendimiento , Concentración de Iones de Hidrógeno , Isoenzimas/antagonistas & inhibidores , Isoenzimas/genética , Isoenzimas/metabolismo , Metaloendopeptidasas/genética , Metaloendopeptidasas/metabolismo , Anotación de Secuencia Molecular , Pepstatinas/química , Inhibidores de Proteasas/química , Proteoma/metabolismo , Venenos de Escorpión/genética , Venenos de Escorpión/metabolismo , Escorpiones/clasificación , Escorpiones/metabolismo , Tripsina/genética , Tripsina/metabolismo
12.
J Control Release ; 171(2): 251-7, 2013 Oct 28.
Artículo en Inglés | MEDLINE | ID: mdl-23899821

RESUMEN

Implication of the intracellular proteolytic activity of Cathepsin D (CathD), a lysosomal aspartyl-protease overexpressed in numerous solid tumors, has been evidenced on tumor growth. Its intracellular inhibition by potent inhibitors such as pepstatin constitutes a relevant but challenging molecular target. Indeed the potential of pepstatin as a therapeutic molecule is hampered by its too low intracellular penetration. We addressed this limitation by designing and developing a bioconjugate combining a pepstatin derivative with a new vector of cell penetration (CPNP) specifically targeting the endolysosomal compartment. We showed that this pepstatin conjugate (JMV4463) exhibited high anti-proliferative effect on tumor cell cultures via intracellular CathD inhibition and altered cell cycle associated with apoptotic events in vitro. When tested in mice xenografted with breast cancer cells, JMV4463 delayed tumor emergence and growth.


Asunto(s)
Antineoplásicos/uso terapéutico , Catepsina D/antagonistas & inhibidores , Dipéptidos/uso terapéutico , Neoplasias/tratamiento farmacológico , Pepstatinas/uso terapéutico , Animales , Antineoplásicos/química , Antineoplásicos/farmacología , Apoptosis/efectos de los fármacos , Transporte Biológico/efectos de los fármacos , Caspasa 9/metabolismo , Ciclo Celular/efectos de los fármacos , Línea Celular Tumoral , Dipéptidos/química , Dipéptidos/farmacología , Femenino , Humanos , Ratones , Ratones Desnudos , Neoplasias/metabolismo , Neoplasias/patología , Pepstatinas/química , Pepstatinas/farmacología , Carga Tumoral/efectos de los fármacos , Ensayos Antitumor por Modelo de Xenoinjerto
13.
ACS Chem Biol ; 6(11): 1198-204, 2011 Nov 18.
Artículo en Inglés | MEDLINE | ID: mdl-21910425

RESUMEN

Proteases constitute a major class of drug targets. Endosomal compartments harbor several protease families whose attenuation may be beneficial to a number of biological processes, including inflammation, cancer metastasis, antigen presentation, and parasite clearance. As a step toward the goal of generalized but targeted protease inhibition in the endocytic pathway, we describe here the synthesis, characterization, and cellular application of a novel multifunctional protease inhibitor. We show that pepstatin A, a potent but virtually insoluble inhibitor of cathepsins D and E, can be conjugated to a single site on cystatin C, a potent inhibitor of the papain-like cysteine proteases (PLCP) and of asparagine endopeptidease (AEP), to create a highly soluble compound capable of suppressing the activity of all 3 principal protease families found in endosomes and lysosomes. We demonstrate that this cystatin-pepstatin inhibitor (CPI) can be taken up by cells to modulate protease activity and affect biological responses.


Asunto(s)
Lisosomas/efectos de los fármacos , Pepstatinas/farmacología , Inhibidores de Proteasas/farmacología , Cistatinas/química , Proteasas de Cisteína/metabolismo , Endopeptidasas/metabolismo , Lisosomas/enzimología , Lisosomas/fisiología , Pepstatinas/síntesis química , Pepstatinas/química , Inhibidores de Proteasas/síntesis química , Inhibidores de Proteasas/química , Relación Estructura-Actividad
14.
Micron ; 39(2): 168-76, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-17804247

RESUMEN

The negative staining technique, when used with holey carbon support films, presents superior imaging conditions than is the case when samples are adsorbed to continuous carbon films. A demonstration of this negative staining approach is presented, using ammonium molybdate in combination with trehalose, applied to several fibrillar and tubular samples. Fibrils formed from the amyloid-beta peptide and the protease inhibitor pepstain A spread very well unsupported across holes and the different polymorphic fibril forms can be readily assessed. However, tubular forms of amyloid-beta have a tendency to be flattened, due to surface tension forces prior to and during specimen drying. Sub-fibril assembly forms and D-banded rat tail type 1 collagen fibres are presented. The air-dried collagen images produced are shown to contain almost as much detail as those obtainable by cryo-negative staining. Fragile DNA and DNA-protein nanotubes are also shown to yield superior quality images to those produced on continuous carbon films. The iron-storage protein, frataxin, creates elongated oligomeric assemblies, containing bound ferrihydrite microcrystals. The iron particles within these flexuous oligomers can be defined in the presence of ammonium molybdate, but they are more readily demonstrated if the frataxin is spread across holes in the presence of trehalose alone. The samples used here serve to show the likely benefit obtainable from negative staining across holes for a range of other fibrillar and tubular samples in biology, medicine and nanobiotechnology.


Asunto(s)
Amiloide , ADN , Coloración Negativa/métodos , Proteínas , Amiloide/química , Amiloide/ultraestructura , Péptidos beta-Amiloides/química , Péptidos beta-Amiloides/ultraestructura , Animales , Carbono , Colágeno/química , Colágeno/ultraestructura , ADN/química , ADN/ultraestructura , Humanos , Proteínas de Unión a Hierro/química , Proteínas de Unión a Hierro/ultraestructura , Microscopía Electrónica de Transmisión , Molibdeno , Nanotecnología , Pepstatinas/química , Péptidos/síntesis química , Péptidos/química , Proteínas/química , Proteínas/ultraestructura , Ratas , Trehalosa , Frataxina
15.
Biochem Biophys Res Commun ; 364(2): 243-9, 2007 Dec 14.
Artículo en Inglés | MEDLINE | ID: mdl-17937927

RESUMEN

Selective inhibition of enzymes involved in antigen processing such as cathepsin E and cathepsin D is a valuable tool for investigating the roles of these enzymes in the processing pathway. However, the aspartic protease inhibitors, including the highly potent pepstatin A (PepA), are inefficiently transported across the cell membrane and thus have limited access to antigen processing compartments. Previously described mannose-pepstatin conjugates were efficiently taken up by the cells via receptor mediated uptake. However, cells without mannose receptors are unable to take up these conjugates efficiently. The aim of the present study was to synthesize new cell-permeable aspartic protease inhibitors by conjugating pepstatin A with well-known cell penetrating peptides (CPPs). To achieve this, the most commonly used CPPs namely pAntp(43-58) (penetratin), Tat(49-60), and 9-mer of l-arginine (R9), were synthesized and coupled to pepstatin. The enzyme inhibitory properties of these bioconjugates and their cellular uptake into MCF7 (human breast cancer cell line), Boleths (EBV-transformed B-cell line) and dendritic cells (DC) were the focus of our study. We found that the bioconjugate PepA-penetratin (PepA-P) was the most efficient cell-permeable aspartic protease inhibitor tested, and was more efficient than unconjugated PepA. Additionally, we found that PepA-P efficiently inhibited the tetanus toxoid C-fragment processing in peripheral blood mononuclear cells (PBMC), primary DC and in primary B cells. Therefore, PepA-P can be used in studying the role of intracellular aspartic proteases in the MHC class II antigen processing pathway. Moreover, inhibition of tetanus toxoid C-fragment processing by PepA-P clearly implicates the role of aspartic proteinases in antigen processing.


Asunto(s)
Arginina/farmacología , Ácido Aspártico Endopeptidasas/antagonistas & inhibidores , Proteínas Portadoras/farmacología , Productos del Gen tat/química , Pepstatinas/farmacología , Fragmentos de Péptidos/farmacología , Toxoide Tetánico/inmunología , Presentación de Antígeno/efectos de los fármacos , Arginina/química , Ácido Aspártico Endopeptidasas/metabolismo , Linfocitos B/efectos de los fármacos , Linfocitos B/inmunología , Proteínas Portadoras/química , Permeabilidad de la Membrana Celular , Péptidos de Penetración Celular , Células Cultivadas , Células Dendríticas/efectos de los fármacos , Células Dendríticas/inmunología , Humanos , Pepstatinas/química , Fragmentos de Péptidos/química , Relación Estructura-Actividad
16.
J Biochem ; 136(3): 329-34, 2004 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-15598889

RESUMEN

Nitric oxide (NO) is known to possess antiparasitic activity towards Plasmodium species. Parasite proteases are currently considered to be promising targets for antimalarial chemotherapy. In the present study, we have studied the inhibitory effect of NO on the activity of plasmepsin in Plasmodium vivax, the pepsin-like aspartic protease which is believed to be involved in the cleavage during hemoglobin degradation in Plasmodium falciparum. NO donors (+/-) (E)-4-ethyl-2-[(E)-hydroxyimino]-5-nitro-3-hexenamide (NOR-3), S-nitrosoglutathione (GSNO), and sodium nitroprusside (SNP) were found to inhibit this plasmepsin activity in a dose-dependent manner in purified P. vivax aspartic protease enzyme extracts. This inhibitory effect may be attributable to the nitrosylation of the cysteine residue at the catalytic site. However, an inhibitor of aspartic protease activity, namely pepstatin, was also found to inhibit (IC50 3 microM ) the enzyme activity, which we have used as a positive control. Our results therefore provide novel insights into the pathophysiological mechanisms, and will be useful for designing strategies for selectively upregulating NO production in P. vivax infections for antimalarial chemotherapy and also biochemical adaptations of the malaria parasite for survival in the host erythrocytes with a better understanding of the protease substrate interactions.


Asunto(s)
Ácido Aspártico Endopeptidasas/metabolismo , Malaria Vivax/terapia , Molsidomina/análogos & derivados , Óxido Nítrico/metabolismo , Especies de Nitrógeno Reactivo , Animales , Ácido Aspártico/química , Ácido Aspártico/metabolismo , Ácido Aspártico Endopeptidasas/química , Catalasa/metabolismo , Dominio Catalítico , Cromatografía Líquida de Alta Presión , Cisteína/química , Ditiotreitol/farmacología , Relación Dosis-Respuesta a Droga , Electroforesis en Gel de Poliacrilamida , Eritrocitos/citología , Eritrocitos/metabolismo , Gelatina/metabolismo , Glutamato Deshidrogenasa (NADP+)/química , Glutatión , Concentración de Iones de Hidrógeno , Concentración 50 Inhibidora , Malaria Vivax/metabolismo , Molsidomina/metabolismo , Óxido Nítrico/química , Donantes de Óxido Nítrico , Nitroprusiato/química , Nitroprusiato/farmacología , Pepsina A/química , Pepstatinas/química , Pepstatinas/farmacología , Plasmodium/metabolismo , Plasmodium vivax/metabolismo , Inhibidores de Proteasas/farmacología , S-Nitrosoglutatión/química , Factores de Tiempo , Regulación hacia Arriba
17.
J Cell Sci ; 117(Pt 21): 5155-64, 2004 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-15456852

RESUMEN

The 16 kDa prolactin fragment arises from partial proteolysis of the native 23 kDa prolactin pituitary hormone. The mammary gland has been involved in this processing, although it has not been clarified whether it occurs in stroma or epithelial cells or extracellularly. Also, the processing enzyme has not been defined yet. Here we show that the incubation medium of stroma-deprived mammary acini from lactating rat contains an enzymatic activity able to cleave, in a temperature- and time-dependent fashion, the 23 kDa prolactin to generate a 16 kDa prolactin detectable under reducing conditions. This cleavage was not impaired in the presence of hirudin, a thrombin inhibitor, but strongly weakened in the presence of pepstatin A, a cathepsin D inhibitor. Cathepsin D immuno-depletion abolished the capability of acini-conditioned medium to cleave the 23 kDa prolactin. Brefeldin A treatment of acini, a condition that largely abolished the apical secretion of milk proteins, did not impair the secretion of the enzymatically active single chain of cathepsin D. These results show that mature cathepsin D from endosomes or lysosomes is released, likely at the baso-lateral site of mammary epithelial cells, and that a cathepsin D-dependent activity is required to effect, under physiological conditions, the cleavage of 23 kDa prolactin in the extracellular medium. This is the first report demonstrating that cathepsin D can perform a limited proteolysis of a substrate at physiological pH outside the cell.


Asunto(s)
Catepsina D/fisiología , Células Epiteliales/metabolismo , Lactancia , Glándulas Mamarias Animales/metabolismo , Prolactina/metabolismo , Animales , Brefeldino A/farmacología , Catepsina D/química , Catepsina D/metabolismo , Medios de Cultivo Condicionados/metabolismo , Medios de Cultivo Condicionados/farmacología , Endosomas/metabolismo , Femenino , Hirudinas/química , Concentración de Iones de Hidrógeno , Lisosomas/metabolismo , Microscopía Electrónica de Rastreo , Microscopía Fluorescente , Pepstatinas/química , Prolactina/química , Estructura Terciaria de Proteína , Ratas , Temperatura , Factores de Tiempo
18.
Biochem Biophys Res Commun ; 323(4): 1229-35, 2004 Oct 29.
Artículo en Inglés | MEDLINE | ID: mdl-15451428

RESUMEN

Under the selection pressure of drugs, mutations appear in HIV-1 protease even at the sites, which are conserved in the untreated individuals. Cysteine 95 is a highly conserved residue and is believed to be involved in regulation of HIV-1 protease. In some of the virus isolates from patients undergoing heavy treatment with anti-HIV protease drugs, C95F mutation has appeared. The present study reports 1.8A X-ray structure of C95M/C1095F double mutant of tethered HIV-1 protease dimer complexed with acetyl pepstatin. It is found that in this mutant, dimer interface has become more rigid and that the packing at the interface of terminal and core domains is altered. These alterations may be relevant to C95F mutation conferring drug resistance to HIV-1 protease.


Asunto(s)
Cisteína/química , Proteasa del VIH/química , Modelos Químicos , Modelos Moleculares , Pepstatinas/química , Sustitución de Aminoácidos , Sitios de Unión , Simulación por Computador , Cristalización/métodos , Cristalografía por Rayos X/métodos , Dimerización , Activación Enzimática , Sustancias Macromoleculares , Mutagénesis Sitio-Dirigida , Mutación , Unión Proteica , Conformación Proteica , Estructura Terciaria de Proteína , Relación Estructura-Actividad
19.
Protein Pept Lett ; 10(1): 35-42, 2003 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-12625824

RESUMEN

The newly-discovered human aspartic proteinase, napsin A was not susceptible to protein inhibitors from potato, squash or yeast but was weakly inhibited by the 17 kDa polypeptide from Ascaris lumbricoides and potently by isovaleryl and lactoyl-pepstatins. A series of synthetic inhibitors was also investigated which contained in the P(1)-P(1)' positions the dipeptide analogue statine or its phenylalanine or cyclohexylalanine homologues and in which the residues occupying P(4)-P(3)' were varied systematically. On this basis, the active site of napsin A can be readily distinguished from other human aspartic proteinases.


Asunto(s)
Ácido Aspártico Endopeptidasas/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Secuencia de Aminoácidos , Aminoácidos/química , Aminoácidos/farmacología , Animales , Ascaris lumbricoides/química , Sitios de Unión , Células Cultivadas , Inhibidores Enzimáticos/química , Humanos , Cinética , Modelos Moleculares , Pepstatinas/química , Pepstatinas/farmacología , Péptidos/farmacología , Proteínas Recombinantes/antagonistas & inhibidores
20.
J Biol Chem ; 277(32): 28677-82, 2002 Aug 09.
Artículo en Inglés | MEDLINE | ID: mdl-12029090

RESUMEN

Pepsin inhibition by 3-alkoxy-4-arylpiperidine (substituted piperidine; (3R,4R)-3-(4-bromobenzyloxy)-4-[4-(2-naphthalen-1-yl-2-oxo-ethoxy)phenyl]piperidine) has been studied using steady-state kinetic and pre-equilibrium binding methods. Data were compared with pepstatin A, a well known competitive inhibitor of pepsin. Steady-state analysis reveals that the substituted piperidine likewise behaves as a competitive inhibitor. Pre-equilibrium binding studies indicate that the substituted piperidine can displace a fluorescently labeled statine inhibitor from the enzyme active site. Simulation of the stopped-flow fluorescence transients provided estimates of the K(d) values of 1.4 +/- 0.2 microm and 39 +/- 2 nm for the piperidine and the fluorescently labeled statine, respectively. The effects of combinations of these two inhibitors resulted in a series of parallel lines when plotted by the method of Yonetani and Theorell (Yonetani, T., and Theorell, H. (1964) Arch. Biochem. Biophys. 106, 234-251), suggesting that the two inhibitors bind in a mutually exclusive fashion to pepsin. Fitting of the entire data set to the appropriate equation yielded an alpha factor of 8 +/- 1. The magnitude of this factor ( infinity > alpha > 1) can be explained by a conformational distinction between the enzyme species that bind each inhibitor. The effects of pH on the inhibition constants for pepstatin A and the substituted piperidine also suggest that the inhibitors bind to distinct conformational forms of the enzyme. No inhibition by the piperidine was observed at acidic pH, while pepstatin A inhibition is maximal at low pH values. Inhibition by the piperidine was maximal when a group with pK 4.8 +/- 0.2 was deprotonated and another group with pK 5.9 +/- 0.2 was protonated. Most likely these two groups are the catalytic aspartates with perturbed ionization properties as a result of a significant and unique conformational change. Taken together, these data suggest that the enzyme can readily interconvert between two conformers, one capable of binding substrate and pepstatin A and the other capable of binding the substituted piperidine.


Asunto(s)
Ácido Aspártico Endopeptidasas/antagonistas & inhibidores , Pepsina A/antagonistas & inhibidores , Piperidinas/química , Animales , Cromatografía Líquida de Alta Presión , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos/farmacología , Concentración de Iones de Hidrógeno , Cinética , Modelos Químicos , Pepstatinas/química , Péptidos/química , Unión Proteica , Conformación Proteica , Espectrometría de Fluorescencia , Especificidad por Sustrato , Porcinos , Factores de Tiempo
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