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1.
Microb Genom ; 10(7)2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-39037207

RESUMEN

The insect order Blattodea (cockroaches and termites) has drawn substantial research attention for their dietary habits and lifestyle of living with or around humans. In the present study, we focused on the discovery of RNA viruses hidden in Blattodea insects using the publicly available RNA sequencing datasets. Overall, 136 distinctive RNA viruses were identified from 36 Blattodea species, of which more than 70 % were most closely related to the invertebrate-associated viral groups within Picornavirales, Sobelivirales, Bunyaviricetes, Jingchuvirales, Durnavirales, Lispiviridae, Orthomyxoviridae, Permutotetraviridae, Flaviviridae and Muvirales. Several viruses were associated with pathogens of vertebrates (Paramyxoviridae), plants (Tymovirales), protozoa (Totiviridae), fungi (Narnaviridae) and bacteria (Norzivirales). Collectively, 93 complete or near-complete viral genomes were retrieved from the datasets, and several viruses appeared to have remarkable temporal and spatial distributions. Interestingly, the newly identified Periplaneta americana dicistrovirus displayed a remarkable distinct bicistronic genome arrangement from the well-recognized dicistroviruses with the translocated structural and non-structural polyprotein encoding open reading frames over the genome. These results significantly enhance our knowledge of RNA virosphere in Blattodea insects, and the novel genome architectures in dicistroviruses and other RNA viruses may break our stereotypes in the understanding of the genomic evolution and the emergence of potential novel viral species.


Asunto(s)
Cucarachas , Genoma Viral , Isópteros , Filogenia , Virus ARN , Animales , Virus ARN/genética , Virus ARN/aislamiento & purificación , Virus ARN/clasificación , Isópteros/virología , Cucarachas/virología , Virus de Insectos/genética , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación
2.
Acta Trop ; 257: 107316, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38971572

RESUMEN

An epidemiological survey of honey bee viruses was conducted on 87 clinically healthy beehives located in southeastern Morocco. The sampled colonies were analyzed by reverse transcriptase (RT)-PCR / Real Time RT-qPCR with the aim of detecting and / or quantifying the following viruses: acute bee paralysis virus (ABPV), chronic bee paralysis virus (CBPV), deformed wing virus (DWV), sacbrood virus (SBV), black queen cell virus (BQCV), Kashmir bee virus (KBV) and Israeli acute paralysis virus (IAPV). With the exception of the last two of these viruses, all the other five were detected with different prevalence rates. DWV showed the highest prevalence rate (89.65 %), followed by BQCV (17.24 %), ABPV (8.04 %), CBPV (4.59 %), and SBV (2.29 %). This study represents the first molecular detection of BQCV in the country. Among all investigated colonies, only eight were virus free (9.2 %). By contrast, single infection was detected in 64.37 % of colonies, 21.8 % showed mixed infection with two viruses, while 4.6 % showed three. Nucleotide sequences of a portion of the DWV polyprotein gene obtained for six honey bee samples showed the greatest nucleotide identity with sequences of DWV from Sweden and Ireland. The negative effect of migratory beekeeping as opposed to stationary beekeeping was highlighted given that stationary beehives showed infection with up to three viruses only, while migratory beehives showed up to five viruses. The results of this study are of crucial importance as they shed light on the current status of honey bee health in southeastern Morocco.


Asunto(s)
Virus de Insectos , Abejas/virología , Animales , Marruecos/epidemiología , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Virus de Insectos/clasificación , Virus ARN/genética , Virus ARN/aislamiento & purificación , Virus ARN/clasificación , Reacción en Cadena en Tiempo Real de la Polimerasa , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Prevalencia , Dicistroviridae/genética , Dicistroviridae/aislamiento & purificación , Virosis/epidemiología , Virosis/virología , Virosis/veterinaria , Filogenia
3.
Viruses ; 13(12)2021 12 10.
Artículo en Inglés | MEDLINE | ID: mdl-34960741

RESUMEN

Tsetse flies cause major health and economic problems as they transmit trypanosomes causing sleeping sickness in humans (Human African Trypanosomosis, HAT) and nagana in animals (African Animal Trypanosomosis, AAT). A solution to control the spread of these flies and their associated diseases is the implementation of the Sterile Insect Technique (SIT). For successful application of SIT, it is important to establish and maintain healthy insect colonies and produce flies with competitive fitness. However, mass production of tsetse is threatened by covert virus infections, such as the Glossina pallidipes salivary gland hypertrophy virus (GpSGHV). This virus infection can switch from a covert asymptomatic to an overt symptomatic state and cause the collapse of an entire fly colony. Although the effects of GpSGHV infections can be mitigated, the presence of other covert viruses threaten tsetse mass production. Here we demonstrated the presence of two single-stranded RNA viruses isolated from Glossina morsitans morsitans originating from a colony at the Seibersdorf rearing facility. The genome organization and the phylogenetic analysis based on the RNA-dependent RNA polymerase (RdRp) revealed that the two viruses belong to the genera Iflavirus and Negevirus, respectively. The names proposed for the two viruses are Glossina morsitans morsitans iflavirus (GmmIV) and Glossina morsitans morsitans negevirus (GmmNegeV). The GmmIV genome is 9685 nucleotides long with a poly(A) tail and encodes a single polyprotein processed into structural and non-structural viral proteins. The GmmNegeV genome consists of 8140 nucleotides and contains two major overlapping open reading frames (ORF1 and ORF2). ORF1 encodes the largest protein which includes a methyltransferase domain, a ribosomal RNA methyltransferase domain, a helicase domain and a RdRp domain. In this study, a selective RT-qPCR assay to detect the presence of the negative RNA strand for both GmmIV and GmmNegeV viruses proved that both viruses replicate in G. m. morsitans. We analyzed the tissue tropism of these viruses in G. m. morsitans by RNA-FISH to decipher their mode of transmission. Our results demonstrate that both viruses can be found not only in the host's brain and fat bodies but also in their reproductive organs, and in milk and salivary glands. These findings suggest a potential horizontal viral transmission during feeding and/or a vertically viral transmission from parent to offspring. Although the impact of GmmIV and GmmNegeV in tsetse rearing facilities is still unknown, none of the currently infected tsetse species show any signs of disease from these viruses.


Asunto(s)
Virus de Insectos/fisiología , Virus ARN Monocatenarios Positivos/fisiología , Moscas Tse-Tse/virología , Tropismo Viral , Animales , Encéfalo/virología , Sistema Digestivo/virología , Cuerpo Adiposo/virología , Femenino , Genitales/virología , Genoma Viral , Virus de Insectos/clasificación , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Masculino , Filogenia , Virus ARN Monocatenarios Positivos/clasificación , Virus ARN Monocatenarios Positivos/genética , Virus ARN Monocatenarios Positivos/aislamiento & purificación , Glándulas Salivales/virología , Replicación Viral
4.
Viruses ; 13(8)2021 07 23.
Artículo en Inglés | MEDLINE | ID: mdl-34452301

RESUMEN

Wasps of the genus Vespula are social insects that have become major pests and predators in their introduced range. Viruses present in these wasps have been studied in the context of spillover from honey bees, yet we lack an understanding of the endogenous virome of wasps as potential reservoirs of novel emerging infectious diseases. We describe the characterization of 68 novel and nine previously identified virus sequences found in transcriptomes of Vespula vulgaris in colonies sampled from their native range (Belgium) and an invasive range (New Zealand). Many viruses present in the samples were from the Picorna-like virus family (38%). We identified one Luteo-like virus, Vespula vulgaris Luteo-like virus 1, present in the three life stages examined in all colonies from both locations, suggesting this virus is a highly prevalent and persistent infection in wasp colonies. Additionally, we identified a novel Iflavirus with similarity to a recently identified Moku virus, a known wasp and honey bee pathogen. Experimental infection of honey bees with this novel Vespula vulgaris Moku-like virus resulted in an active infection. The high viral diversity present in these invasive wasps is a likely indication that their polyphagous diet is a rich source of viral infections.


Asunto(s)
Abejas/virología , Virus de Insectos/aislamiento & purificación , Virus de Insectos/fisiología , Virus ARN/aislamiento & purificación , Virus ARN/fisiología , Viroma , Avispas/virología , Animales , Virus de Insectos/clasificación , Virus de Insectos/genética , Virus ARN/clasificación , Virus ARN/genética , Carga Viral , Replicación Viral
5.
Arch Virol ; 166(8): 2333-2335, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-34075444

RESUMEN

The complete genome sequence of a novel iflavirus isolated from the gregarious and koinobiont endoparasitoid Tetrastichus brontispae, tentatively named "Tetrastichus brontispae RNA virus 3" (TbRV-3), was determined by total RNA and Sanger sequencing. The complete genome is 9998 nucleotides in length, 8934 nt of which encodes a putative polyprotein of 2978 amino acids. TbRV-3 was found to have a similar genome organization and to contain conserved domains and motifs found in other iflaviruses, with some variations. Phylogenetic analysis based on deduced amino acid sequences of the RdRp domain showed that TbRV-3 clustered with Dinocampus coccinellae paralysis virus (DcPV). However, the percent amino acid sequence identity of the putative capsid proteins of TbRV-3 and DcPV determined using BLASTp was below the species demarcation threshold (90%), suggesting that TbRV-3 is a new iflavirus. This is the first virus of the family Iflaviridae to be isolated from a wasp of the family Eulophidae.


Asunto(s)
Virus de Insectos/clasificación , Avispas/virología , Secuenciación Completa del Genoma/métodos , Secuencia de Aminoácidos , Animales , Tamaño del Genoma , Genoma Viral , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ARN
6.
Viruses ; 12(8)2020 08 14.
Artículo en Inglés | MEDLINE | ID: mdl-32824037

RESUMEN

To date, the microbiome, as well as the virome of the Croatian populations of bats, was unknown. Here, we present the results of the first viral metagenomic analysis of guano, feces and saliva (oral swabs) of seven bat species (Myotis myotis, Miniopterus schreibersii, Rhinolophus ferrumequinum, Eptesicus serotinus, Myotis blythii, Myotis nattereri and Myotis emarginatus) conducted in Mediterranean and continental Croatia. Viral nucleic acids were extracted from sample pools, and analyzed using Illumina sequencing. The presence of 63 different viral families representing all seven Baltimore groups were confirmed, most commonly insect viruses likely reflecting the diet of insectivorous bats. Virome compositions of our samples were largely impacted by the sample type: invertebrate-infecting viruses were most frequently found in feces, bacterial viruses in guano, whereas vertebrate-infecting viruses were most common in swabs. Most vertebrate-infecting virus sequences were assigned to retroviruses, parvoviruses, iridoviruses, and poxviruses. We further report the complete genome sequence of a novel adeno-associated virus, densovirus and a near complete length genome sequence of a novel iflavirus. Additionally, one of the most interesting findings in this study was the difference in viromes between two contrasting habitats, the continental and Mediterranean Croatia.


Asunto(s)
Quirópteros/virología , Reservorios de Enfermedades/veterinaria , Ecosistema , Metagenoma , Viroma/genética , Virosis/veterinaria , Animales , Croacia , Reservorios de Enfermedades/virología , Heces/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Virus de Insectos/clasificación , Metagenómica , Filogenia , Saliva/virología , Análisis de Secuencia de ADN , Virus/clasificación , Virus/aislamiento & purificación , Zoonosis/virología
7.
Arch Virol ; 163(7): 2001-2003, 2018 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-29574590

RESUMEN

A novel iflavirus, tentatively named "Sogatella furcifera honeydew virus 1" (SFHV1), discovered through transcriptome sequencing analysis of white-backed planthoppers (Sogatella furcifera) collected in southern China, is described here. The full genome of SFHV1 is 10,837 nucleotides (nt) long, including the polyA tail, and shares 65.5% and 64.5% genomic identity with Laodelphax striatellus picorna-like virus 2 and Laodelphax striatella honeydew virus 1, respectively. On the basis of the phylogenetic analysis of the complete genomic sequence and the deduced RdRp amino acid sequence of SFHV1 with other iflaviruses, we suggest that it is a member of a new species in the genus Iflavirus, family Iflaviridae.


Asunto(s)
Genoma Viral , Hemípteros/virología , Virus de Insectos/genética , Virus ARN/genética , Virus ARN/aislamiento & purificación , Secuencia de Aminoácidos , Animales , Cisteína Endopeptidasas/genética , Epilepsia Postraumática , Perfilación de la Expresión Génica , Genómica , Virus de Insectos/clasificación , Filogenia , Virus ARN/clasificación , Análisis de Secuencia de ARN , Proteínas Virales/genética
8.
J Gen Virol ; 98(11): 2876-2881, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-29048274

RESUMEN

During an entomological surveillance for arthropod-borne viruses in the Philippines, we isolated a previously unrecognized virus from female Armigeres spp. mosquitoes. Whole-genome sequencing, genetic characterization and phylogenetic analysis revealed that the isolated virus, designated Armigeres iflavirus (ArIFV), is a novel member of the iflaviruses (genus Iflavirus, family Iflaviridae) and phylogenetically related to Moku virus, Hubei odonate virus 4, slow bee paralysis virus and Graminella nigrifrons virus 1. To our knowledge, this is the first successful isolation of iflavirus from a dipteran insect. Spherical ArIFV particles of approximately 30 nm in diameter contained at least three major structural proteins. ArIFV multiplied to high titres (~109 p.f.u. ml-1) and formed clear plaques in a mosquito cell line, C6/36. Our findings provide new insights into the infection mechanism, genetic diversity and evolution of the Iflaviridae family.


Asunto(s)
Culicidae/virología , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación , Virus ARN/clasificación , Virus ARN/aislamiento & purificación , Animales , Línea Celular , Filipinas , Ensayo de Placa Viral , Proteínas Estructurales Virales/análisis , Virión/química , Virión/ultraestructura
9.
J Gen Virol ; 98(9): 2368-2378, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28857036

RESUMEN

Solenopsis invicta virus 2 is a single-stranded positive-sense picorna-like RNA virus with an unusual genome structure. The monopartite genome of approximately 11 kb contains four open reading frames in its 5' third, three of which encode proteins with homology to picornavirus-like jelly-roll fold capsid proteins. These are followed by an intergenic region, and then a single long open reading frame that covers the 3' two-thirds of the genome. The polypeptide translation of this 3' open reading frame contains motifs characteristic of picornavirus-like helicase, protease and RNA-dependent RNA polymerase domains. An inspection of public transcriptome shotgun assembly sequences revealed five related apparently nearly complete virus genomes isolated from ant species and one from a dipteran insect. By high-throughput sequencing and in silico assembly of RNA isolated from Solenopsis invicta and four other ant species, followed by targeted Sanger sequencing, we obtained nearly complete genomes for four further viruses in the group. Four further sequences were obtained from a recent large-scale invertebrate virus study. The 15 sequences are highly divergent (pairwise amino acid identities of as low as 17 % in the non-structural polyprotein), but possess the same overall polycistronic genome structure, which is distinct from all other characterized picorna-like viruses. Consequently, we propose the formation of a new virus family, Polycipiviridae, to classify this clade of arthropod-infecting polycistronic picorna-like viruses. We further propose that this family be divided into three genera: Chipolycivirus (2 species), Hupolycivirus (2 species) and Sopolycivirus (11 species), with members of the latter infecting ants in at least 3 different subfamilies.


Asunto(s)
Hormigas/virología , Picornaviridae/aislamiento & purificación , Animales , Genoma Viral , Virus de Insectos/clasificación , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Filogenia , Picornaviridae/clasificación , Picornaviridae/genética , ARN Viral/genética , ARN Viral/metabolismo
10.
Sci Rep ; 6: 34983, 2016 10 07.
Artículo en Inglés | MEDLINE | ID: mdl-27713534

RESUMEN

There is an increasing global trend of emerging infectious diseases (EIDs) affecting a wide range of species, including honey bees. The global epidemic of the single stranded RNA Deformed wing virus (DWV), driven by the spread of Varroa destructor has been well documented. However, DWV is just one of many insect RNA viruses which infect a wide range of hosts. Here we report the full genome sequence of a novel Iflavirus named Moku virus (MV), discovered in the social wasp Vespula pensylvanica collected in Hawaii. The novel genome is 10,056 nucleotides long and encodes a polyprotein of 3050 amino acids. Phylogenetic analysis showed that MV is most closely related to Slow bee paralysis virus (SBPV), which is highly virulent in honey bees but rarely detected. Worryingly, MV sequences were also detected in honey bees and Varroa from the same location, suggesting that MV can also infect other hymenopteran and Acari hosts.


Asunto(s)
Abejas/virología , Virus de Insectos/genética , Virus ARN/genética , Varroidae/virología , Avispas/virología , Animales , Genoma Viral , Hawaii , Especificidad del Huésped , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación , Filogenia , Virus ARN/clasificación , Virus ARN/aislamiento & purificación , ARN Viral/genética , Proteínas Virales/genética
11.
J Gen Virol ; 97(4): 1010-1031, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26801744

RESUMEN

Glossina pallidipes salivary gland hypertrophy virus (GpSGHV; family Hytrosaviridae) can establish asymptomatic and symptomatic infection in its tsetse fly host. Here, we present a comprehensive annotation of the genome of an Ethiopian GpSGHV isolate (GpSGHV-Eth) compared with the reference Ugandan GpSGHV isolate (GpSGHV-Uga; GenBank accession number EF568108). GpSGHV-Eth has higher salivary gland hypertrophy syndrome prevalence than GpSGHV-Uga. We show that the GpSGHV-Eth genome has 190 291 nt, a low G+C content (27.9 %) and encodes 174 putative ORFs. Using proteogenomic and transcriptome mapping, 141 and 86 ORFs were mapped by transcripts and peptides, respectively. Furthermore, of the 174 ORFs, 132 had putative transcriptional signals [TATA-like box and poly(A) signals]. Sixty ORFs had both TATA-like box promoter and poly(A) signals, and mapped by both transcripts and peptides, implying that these ORFs encode functional proteins. Of the 60 ORFs, 10 ORFs are homologues to baculovirus and nudivirus core genes, including three per os infectivity factors and four RNA polymerase subunits (LEF4, 5, 8 and 9). Whereas GpSGHV-Eth and GpSGHV-Uga are 98.1 % similar at the nucleotide level, 37 ORFs in the GpSGHV-Eth genome had nucleotide insertions (n = 17) and deletions (n = 20) compared with their homologues in GpSGHV-Uga. Furthermore, compared with the GpSGHV-Uga genome, 11 and 24 GpSGHV ORFs were deleted and novel, respectively. Further, 13 GpSGHV-Eth ORFs were non-canonical; they had either CTG or TTG start codons instead of ATG. Taken together, these data suggest that GpSGHV-Eth and GpSGHV-Uga represent two different lineages of the same virus. Genetic differences combined with host and environmental factors possibly explain the differential GpSGHV pathogenesis observed in different G. pallidipes colonies.


Asunto(s)
Virus ADN/genética , ADN Viral/genética , Genoma Viral , Virus de Insectos/genética , Transcriptoma , Moscas Tse-Tse/virología , Animales , Composición de Base , Secuencia de Bases , Mapeo Cromosómico , Virus ADN/clasificación , Virus ADN/patogenicidad , Tamaño del Genoma , Virus de Insectos/clasificación , Virus de Insectos/patogenicidad , Anotación de Secuencia Molecular , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Proteómica/métodos , Glándulas Salivales/virología , Proteínas del Núcleo Viral , Factores de Virulencia
12.
J Virol ; 86(20): 10999-1012, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22855479

RESUMEN

Bats are natural hosts for a large variety of zoonotic viruses. This study aimed to describe the range of bat viromes, including viruses from mammals, insects, fungi, plants, and phages, in 11 insectivorous bat species (216 bats in total) common in six provinces of China. To analyze viromes, we used sequence-independent PCR amplification and next-generation sequencing technology (Solexa Genome Analyzer II; Illumina). The viromes were identified by sequence similarity comparisons to known viruses. The mammalian viruses included those of the Adenoviridae, Herpesviridae, Papillomaviridae, Retroviridae, Circoviridae, Rhabdoviridae, Astroviridae, Flaviridae, Coronaviridae, Picornaviridae, and Parvovirinae; insect viruses included those of the Baculoviridae, Iflaviridae, Dicistroviridae, Tetraviridae, and Densovirinae; fungal viruses included those of the Chrysoviridae, Hypoviridae, Partitiviridae, and Totiviridae; and phages included those of the Caudovirales, Inoviridae, and Microviridae and unclassified phages. In addition to the viruses and phages associated with the insects, plants, and bacterial flora related to the diet and habitation of bats, we identified the complete or partial genome sequences of 13 novel mammalian viruses. These included herpesviruses, papillomaviruses, a circovirus, a bocavirus, picornaviruses, a pestivirus, and a foamy virus. Pairwise alignments and phylogenetic analyses indicated that these novel viruses showed little genetic similarity with previously reported viruses. This study also revealed a high prevalence and diversity of bat astroviruses and coronaviruses in some provinces. These findings have expanded our understanding of the viromes of bats in China and hinted at the presence of a large variety of unknown mammalian viruses in many common bat species of mainland China.


Asunto(s)
Quirópteros/virología , Genoma Viral , Virus/clasificación , Virus/genética , Animales , Bacteriófagos/clasificación , China , Hongos/virología , Variación Genética , Virus de Insectos/clasificación , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Insectos/virología , Mamíferos/virología , Datos de Secuencia Molecular , Análisis de Secuencia por Matrices de Oligonucleótidos , Filogenia , Virus de Plantas/clasificación , Virus de Plantas/genética , Virus de Plantas/aislamiento & purificación , Plantas/virología , Virus/aislamiento & purificación
13.
J Virol ; 86(8): 4620-30, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22345464

RESUMEN

Increasing data indicate that bats harbor diverse viruses, some of which cause severe human diseases. In this study, sequence-independent amplification and high-throughput sequencing (Solexa) were applied to the metagenomic analysis of viruses in bat fecal samples collected from 6 locations in China. A total of 8,746,417 reads with a length of 306,124,595 bp were obtained. Among these reads, 13,541 (0.15%) had similarity to phage sequences and 9,170 (0.1%) had similarity to eukaryotic virus sequences. A total of 129 assembled contigs (>100 nucleotides) were constructed and compared with GenBank: 32 contigs were related to phages, and 97 were related to eukaryotic viruses. The most frequent reads and contigs related to eukaryotic viruses were homologous to densoviruses, dicistroviruses, coronaviruses, parvoviruses, and tobamoviruses, a range that includes viruses from invertebrates, vertebrates, and plants. Most of the contigs had low identities to known viral genomic or protein sequences, suggesting that a large number of novel and genetically diverse insect viruses as well as putative mammalian viruses are transmitted by bats in China. This study provides the first preliminary understanding of the virome of some bat populations in China, which may guide the discovery and isolation of novel viruses in the future.


Asunto(s)
Quirópteros/virología , Virus de Insectos/genética , Metagenómica/métodos , Animales , China , Biología Computacional/métodos , Coronavirus/clasificación , Coronavirus/genética , Densovirinae/clasificación , Densovirinae/genética , Dicistroviridae/clasificación , Dicistroviridae/genética , Heces/virología , Secuenciación de Nucleótidos de Alto Rendimiento , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación , Datos de Secuencia Molecular , Parvoviridae/clasificación , Parvoviridae/genética , Filogenia
14.
Virology ; 391(1): 119-29, 2009 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-19580982

RESUMEN

We isolated a new flavivirus from Aedes albopictus mosquito and a related species in Japan. The virus, designated Aedes flavivirus (AEFV), only replicated in a mosquito cell line and produced a mild cytopathic effect. The AEFV genome was positive-sense, single-stranded RNA, 11,064 nucleotides in length and contained a single open reading frame encoding a polyprotein of 3341 amino acids with 5' and 3' untranslated regions (UTRs) of 96 and 945 nucleotides, respectively. Genetic and phylogenetic analyses classified AEFV with the insect flavivirus, but distinct from Cell fusing agent (CFA), Kamiti river virus and Culex flavivirus. Interestingly, a partial sequence of AEFV showed significant similarity to that of Cell silent agent (CSA), the insect flavivirus-related nucleotide sequence integrated in the genome of A. albopictus. These results suggest that AEFV is a new member of the insect flaviviruses, which are intimately associated with Aedes mosquitoes and may share a common origin with CSA.


Asunto(s)
Aedes/virología , Flavivirus/genética , Flavivirus/aislamiento & purificación , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Animales , Secuencia de Bases , Línea Celular , Chlorocebus aethiops , Cricetinae , Flavivirus/clasificación , Genoma Viral , Virus de Insectos/clasificación , Datos de Secuencia Molecular , Filogenia , ARN Viral/genética , Células Vero
15.
Virus Res ; 138(1-2): 144-9, 2008 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-18831994

RESUMEN

Using electron microscopy, we demonstrated the presence of a novel small RNA-containing virus in the venom apparatus of an endoparasitic wasp, Pteromalus puparum, designated as PpSRV. Morphologically, PpSRV has classical features of picorna-like viruses. It caused the development deterioration and tissue destruction of P. puparum venom apparatus. The laboratory colony of P. puparum was infectious with PpSRV at a low level. Partial genomic sequence analysis indicated that PpSRV 3'-proximal genome was characteristically similar to most dicistroviruses containing an internal ribosome entry site (IRES) for facilitating cap-independent translation and a 3' ORF encoding a structural protein with three major capsid polyproteins (28, 31 and 28 kDa) and a minor one (9.6 kDa). Phylogenetic evolution analysis of PpSRV structural protein with the counterparts of other dicistroviruses exhibited that PpSRV belonged to the Cripavirus genus and fell into same clade with Black queen cell virus (BQCV), an infectious virus to honey bee, suggesting that PpSRV might be pathogenic to P. puparum.


Asunto(s)
Genoma Viral , Virus de Insectos/genética , Virus ARN/genética , Avispas/virología , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Virus de Insectos/química , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Filogenia , Virus ARN/química , Virus ARN/clasificación , Virus ARN/aislamiento & purificación , Alineación de Secuencia , Venenos de Avispas
16.
Virology ; 377(1): 184-96, 2008 Jul 20.
Artículo en Inglés | MEDLINE | ID: mdl-18495197

RESUMEN

The genome of the virus that causes salivary gland hypertrophy in Musca domestica (MdSGHV) was sequenced. This non-classified, enveloped, double stranded, circular DNA virus had a 124,279bp genome. The G + C content was 43.5% with 108 putative methionine-initiated open reading frames (ORFs). Thirty ORFs had homology to database proteins: eleven to proteins coded by both baculoviruses and nudiviruses (p74, pif-1, pif-2, pif-3, odv-e66, rr1, rr2, iap, dUTPase, MMP, and Ac81-like), seven to nudiviruses (mcp, dhfr, ts, tk and three unknown proteins), one to baculovirus (Ac150-like), one to herpesvirus (dna pol), and ten to cellular proteins. Mass spectrum analysis of the viral particles' protein components identified 29 structural ORFs, with only p74 and odv-e66 previously characterized as baculovirus structural proteins. Although most of the homology observed was to nudiviruses, phylogenetic analysis showed that MdSGHV was not closely related to them or to the baculoviruses.


Asunto(s)
Virus ADN/genética , Virus ADN/aislamiento & purificación , Moscas Domésticas/virología , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Animales , Baculoviridae/clasificación , Baculoviridae/genética , Composición de Base , Secuencia de Bases , Replicación del ADN , Virus ADN/clasificación , Virus ADN/patogenicidad , ADN Viral/química , ADN Viral/genética , Femenino , Genoma Viral , Hipertrofia , Virus de Insectos/clasificación , Virus de Insectos/patogenicidad , Microscopía Electrónica de Transmisión , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Filogenia , Glándulas Salivales/patología , Proteínas Estructurales Virales/genética , Proteínas Estructurales Virales/fisiología
17.
Genetika ; 43(10): 1388-95, 2007 Oct.
Artículo en Ruso | MEDLINE | ID: mdl-18069343

RESUMEN

Drosophila melanogaster retrotransposons of the gypsy group are considered to be potential errantiviruses. Their infectivity is caused by the functional activity of the third open reading frame (ORF3) encoding the Env protein, which was probably captured from baculoviruses. Mobile genetic elements (MGEs) of the gypsy group can be conventionally divided into three subgroups: with three ORFs, with a defective ORF3, and without the ORF3. To establish the patterns of evolution of gypsy retrotransposons in D. melanogaster, the members of the three subgroups were examined. Structural analysis of retrotransposons opus and rover, which carry a defective ORF3, as well as retrotransposons Burdock, McClintock, qbert, and HMS-Beagle, which lack the ORF3, suggests that the evolution of these MGEs followed the pattern of loosing the ORF3. At the same time, an MGE of the same subgroup, Transpac, may be an ancestral form, which had acquired the env gene and gave rise to the first errantiviruses. The capture of the ORF3 by retrotransposons provided their conversion to a fundamentally new state. However, the ORF3 in the genome is not subjected to strong selective pressure, because it is not essential for intragenomic transpositions. Because of this, the process of its gradual loss seems quite natural.


Asunto(s)
Drosophila melanogaster/virología , Virus de Insectos/clasificación , Virus de Insectos/genética , Retroelementos/genética , Retroviridae/clasificación , Retroviridae/genética , Secuencia de Aminoácidos , Animales , Secuencia Conservada , Evolución Molecular , Datos de Secuencia Molecular , Sistemas de Lectura Abierta/genética , Filogenia
18.
J Gen Virol ; 88(Pt 12): 3428-3438, 2007 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-18024913

RESUMEN

We report the isolation, purification, genome-sequencing and characterization of a picorna-like virus from dead bees in Israel. Sequence analysis indicated that IAPV (Israeli acute paralysis virus) is a distinct dicistrovirus. It is most homologous to Kashmir bee virus and acute bee paralysis virus. The virus carries a 9487 nt RNA genome in positive orientation, with two open reading frames separated by an intergenic region, and its coat comprises four major proteins, the sizes of which suggest alternate processing of the polyprotein. IAPV virions also carry shorter, defective-interfering (DI)-like RNAs. Some of these RNAs are recombinants of different segments of IAPV RNA, some are recombinants of IAPV RNA and RNA from another dicistrovirus, and yet others are recombinants of IAPV and non-viral RNAs. In several of the DI-like RNAs, a sense-oriented fragment has recombined with its complement, forming hairpins and stem-loop structures. In previous reports, we have shown that potyviral and IAPV sequences are integrated into the genome of their respective hosts. The dynamics of information exchange between virus and host and the possible resistance-engendering mechanisms are discussed.


Asunto(s)
Abejas/virología , Virus Defectuosos , Genoma Viral , Virus de Insectos , Infecciones por Picornaviridae/veterinaria , Picornaviridae , ARN Viral/genética , Recombinación Genética , Secuencia de Aminoácidos , Animales , Virus Defectuosos/clasificación , Virus Defectuosos/genética , Virus Defectuosos/aislamiento & purificación , Variación Genética , Virus de Insectos/clasificación , Virus de Insectos/genética , Virus de Insectos/aislamiento & purificación , Israel , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Filogenia , Picornaviridae/clasificación , Picornaviridae/genética , Picornaviridae/aislamiento & purificación , Infecciones por Picornaviridae/virología , ARN Viral/química , Alineación de Secuencia , Proteínas Virales/genética , Virión/genética
19.
J Virol ; 79(21): 13385-98, 2005 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16227260

RESUMEN

The complete genomic sequence of kelp fly virus (KFV), originally isolated from the kelp fly, Chaetocoelopa sydneyensis, has been determined. Analyses of its genomic and structural organization and phylogeny show that it belongs to a hitherto undescribed group within the picorna-like virus superfamily. The single-stranded genomic RNA of KFV is 11,035 nucleotides in length and contains a single large open reading frame encoding a polypeptide of 3,436 amino acids with 5' and 3' untranslated regions of 384 and 343 nucleotides, respectively. The predicted amino acid sequence of the polypeptide shows that it has three regions. The N-terminal region contains sequences homologous to the baculoviral inhibitor of apoptosis repeat domain, an inhibitor of apoptosis commonly found in animals and in viruses with double-stranded DNA genomes. The second region contains at least two capsid proteins. The third region has three sequence motifs characteristic of replicase proteins of many plant and animal viruses, including a helicase, a 3C chymotrypsin-like protease, and an RNA-dependent RNA polymerase. Phylogenetic analysis of the replicase motifs shows that KFV forms a distinct and distant taxon within the picorna-like virus superfamily. Cryoelectron microscopy and image reconstruction of KFV to a resolution of 15 A reveals an icosahedral structure, with each of its 12 fivefold vertices forming a turret from the otherwise smooth surface of the 20-A-thick capsid. The architecture of the KFV capsid is unique among the members of the picornavirus superfamily for which structures have previously been determined.


Asunto(s)
Dípteros/virología , Genoma Viral , Virus de Insectos/clasificación , Picornaviridae/clasificación , Secuencia de Aminoácidos , Animales , Cápside/química , Cápside/ultraestructura , Proteínas de la Cápside/genética , Virus de Insectos/genética , Virus de Insectos/ultraestructura , Datos de Secuencia Molecular , Sistemas de Lectura Abierta/genética , Filogenia , Picornaviridae/genética , Picornaviridae/ultraestructura , ARN Polimerasa Dependiente del ARN/genética , Alineación de Secuencia , Análisis de Secuencia
20.
J Invertebr Pathol ; 86(3): 96-103, 2004 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-15261773

RESUMEN

In this report we present data on biology, gross pathology, ultrastructure, and host range studies of a naturally occurring nucleopolyhedrovirus from the mosquito Uranotaenia sapphirina (UrsaNPV). Development of this virus was restricted to nuclei of epithelial cells in posterior midgut and distal gastric caecum. Occlusion bodies contained numerous singly enveloped rod-shaped virions. Early occlusion bodies were irregularly shaped and seemed to subsequently coalesce to form larger polyhedra. Mature occlusion bodies had a unique dumbbell shape, and lacked a polyhedron envelope and crystalline structure. Developmental and structural features of UrsaNPV were generally similar to other mosquito NPVs, with major differences in occlusion body shape and size. Transmission tests showed that only members of Uranotaenia (Ur. sapphirina and Ur. lowii) were susceptible to this virus. Transmission was facilitated by magnesium. Field collected Ur. sapphirina larvae had a relatively high rate of dual infections with UrsaNPV and UrsaCPV (cypovirus).


Asunto(s)
Núcleo Celular/virología , Culicidae/virología , Células Epiteliales/virología , Virus de Insectos/ultraestructura , Nucleopoliedrovirus/ultraestructura , Animales , Núcleo Celular/ultraestructura , Sistema Digestivo/citología , Sistema Digestivo/virología , Células Epiteliales/ultraestructura , Virus de Insectos/clasificación , Virus de Insectos/aislamiento & purificación , Larva/virología , Nucleopoliedrovirus/clasificación , Nucleopoliedrovirus/aislamiento & purificación
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