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PURPOSE: Cardiac substructure dose metrics are more strongly linked to late cardiac morbidities than to whole-heart metrics. Magnetic resonance (MR)-guided radiation therapy (MRgRT) enables substructure visualization during daily localization, allowing potential for enhanced cardiac sparing. We extend a publicly available state-of-the-art deep learning framework, "No New" U-Net, to incorporate self-distillation (nnU-Net.wSD) for substructure segmentation for MRgRT. METHODS AND MATERIALS: Eighteen (institute A) patients who underwent thoracic or abdominal radiation therapy on a 0.35 T MR-guided linear accelerator were retrospectively evaluated. On each image, 1 of 2 radiation oncologists delineated reference contours of 12 cardiac substructures (chambers, great vessels, and coronary arteries) used to train (n = 10), validate (n = 3), and test (n = 5) nnU-Net.wSD by leveraging a teacher-student network and comparing it to standard 3-dimensional U-Net. The impact of using simulation data or including 3 to 4 daily images for augmentation during training was evaluated for nnU-Net.wSD. Geometric metrics (Dice similarity coefficient, mean distance to agreement, and 95% Hausdorff distance), visual inspection, and clinical dose-volume histograms were evaluated. To determine generalizability, institute A's model was tested on an unlabeled data set from institute B (n = 22) and evaluated via consensus scoring and volume comparisons. RESULTS: nnU-Net.wSD yielded a Dice similarity coefficient (reported mean ± SD) of 0.65 ± 0.25 across the 12 substructures (chambers, 0.85 ± 0.05; great vessels, 0.67 ± 0.19; and coronary arteries, 0.33 ± 0.16; mean distance to agreement, <3 mm; mean 95% Hausdorff distance, <9 mm) while outperforming the 3-dimensional U-Net (0.583 ± 0.28; P <.01). Leveraging fractionated data for augmentation improved over a single MR simulation time point (0.579 ± 0.29; P <.01). Predicted contours yielded dose-volume histograms that closely matched those of the clinical treatment plans where mean and maximum (ie, dose to 0.03 cc) doses deviated by 0.32 ± 0.5 Gy and 1.42 ± 2.6 Gy, respectively. There were no statistically significant differences between institute A and B volumes (P >.05) for 11 of 12 substructures, with larger volumes requiring minor changes and coronary arteries exhibiting more variability. CONCLUSIONS: This work is a critical step toward rapid and reliable cardiac substructure segmentation to improve cardiac sparing in low-field MRgRT.
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Prolonged seizures in children with focal epilepsy (FE) may impair language functions and often reoccur after surgical intervention. This study is aimed at developing a novel deep relational reasoning network to investigate whether conventional diffusion-weighted imaging connectome analysis can be improved when predicting expressive and receptive scores of preoperative language impairments and classifying postoperative seizure outcomes (seizure freedom or recurrence) in individual FE children. To deeply reason the dependencies of axonal connections that are sparsely distributed in the whole brain, this study proposes the "dilated CNN + RN", a dilated convolutional neural network (CNN) combined with a relation network (RN). The performance of the dilated CNN + RN was evaluated using whole brain connectome data from 51 FE children. It was found that when compared with other state-of-the-art algorithms, the dilated CNN + RN led to an average improvement of 90.2% and 97.3% in predicting expressive and receptive language scores, and 2.2% and 4% improvement in classifying seizure freedom and seizure recurrence, respectively. These improvements were independent of the prefixed connectome densities. Also, the dilated CNN + RN could provide an explainable artificial intelligence (AI) model by computing gradient-based regression/classification activation maps. This mapping analysis revealed left superior-medial frontal cortex, bilateral hippocampi, and cerebellum as crucial hubs, facilitating important connections that were most predictive of language function and seizure refractoriness after surgery.