Unraveling microbial processes involved in carbon and nitrogen cycling and greenhouse gas emissions in rewetted peatlands by molecular biology.

Restoration of drained peatlands through rewetting has recently emerged as a prevailing strategy to mitigate excessive greenhouse gas emissions and re-establish the vital carbon sequestration capacity of peatlands. Rewetting can help to restore vegetation communities and biodiversity, while still allowing for extensive agricultural management such as paludiculture. Belowground processes governing carbon fluxes and greenhouse gas dynamics are mediated by a complex network of microbial communities and processes. Our understanding of this complexity and its multi-factorial controls in rewetted peatlands is limited. Here, we summarize the research regarding the role of soil microbial communities and functions in driving carbon and nutrient cycling in rewetted peatlands including the use of molecular biology techniques in understanding biogeochemical processes linked to greenhouse gas fluxes. We emphasize that rapidly advancing molecular biology approaches, such as high-throughput sequencing, are powerful tools helping to elucidate the dynamics of key biogeochemical processes when combined with isotope tracing and greenhouse gas measuring techniques. Insights gained from the gathered studies can help inform efficient monitoring practices for rewetted peatlands and the development of climate-smart restoration and management strategies. Supplementary Information: The online version contains supplementary material available at 10.1007/s10533-024-01122-6.

Diversifying crop rotation increases food production, reduces net greenhouse gas emissions and improves soil health.

Global food production faces challenges in balancing the need for increased yields with environmental sustainability. This study presents a six-year field experiment in the North China Plain, demonstrating the benefits of diversifying traditional cereal monoculture (wheat-maize) with cash crops (sweet potato) and legumes (peanut and soybean). The diversified rotations increase equivalent yield by up to 38%, reduce N2O emissions by 39%, and improve the system's greenhouse gas balance by 88%. Furthermore, including legumes in crop rotations stimulates soil microbial activities, increases soil organic carbon stocks by 8%, and enhances soil health (indexed with the selected soil physiochemical and biological properties) by 45%. The large-scale adoption of diversified cropping systems in the North China Plain could increase cereal production by 32% when wheat-maize follows alternative crops in rotation and farmer income by 20% while benefiting the environment. This study provides an example of sustainable food production practices, emphasizing the significance of crop diversification for long-term agricultural resilience and soil health.

Interactive effects of dung deposited onto urine patches on greenhouse gas fluxes from tropical pastures in Kenya.

Dung and urine patches on grasslands are hotspots of greenhouse gas (GHG) emissions in temperate regions, while its importance remains controversial for tropical regions as emissions seem to be lower. Here we investigated N2O, CH4 and CO2 emissions from urine and dung patches on tropical pastures in Kenya, thereby disentangling interactive and pure water, dung or urine effects. GHG fluxes were monitored with automated chambers for 42-59 days covering three seasons (short rainy season, long rainy season, dry season) for six treatments (Control; +1 L water; +1 kg dung; 1 L urine; 1 L water +1 kg dung; 1 L urine +1 kg dung). Cumulative CO2 emissions did not differ among treatments in any of the seasons. Water or urine addition alone did not affect CH4 fluxes, but these were elevated in all dung-related treatments. Scaled up on the total area covered, dung patches halve the CH4 sink strength of tropical pastures during the dry season, while during the rainy season they may turn tropical pastures into a small CH4 source. For N2O, both dung and urine alone and in combination stimulated emissions. While the N2O emission factor (EFN2O) from dung being constant across seasons, the EFN2O for urine was greater during the short rainy season than during the dry season. Combined application of urine + dung was additive on EFN2O. While the mean dung EFN2O in our study (0.06%) was similar to the IPCC Guidelines for National GHG Inventories EFN2O for dry climate (0.07%), the urine EFN2O we measured (0.03-0.25%) was lower than the IPCC value (0.32%). In addition, the IPCC Guidelines assume a urine-N: dung-N ratio of 0.66:0.34, which is higher than found for SSA (<0.50:0.50). Consequently, IPCC Guidelines still overestimate N2O emissions from excreta patches in SSA.

Applicability of a gas analyzer with dual quantum cascade lasers for simultaneous measurements of N2O, CH4 and CO2 fluxes from cropland using the eddy covariance technique.

We evaluated the applicability of a closed-path gas analyzer with two mid-infrared quantum cascade lasers (QCLs) for simultaneous measurement of nitrous oxide (N2O), methane (CH4) and carbon dioxide (CO2) fluxes from a cropland using the eddy covariance (EC) technique. The measurements were carried out in a typical vegetable field in the subtropical China during the wintertime, when the gas fluxes are at their lowest level in the year. A new approach was proposed to optimize the determination of lag times between the wind and gas concentration data, which was proven efficient to increase the reliability of the measured fluxes when the gas exchanges are weak. The dual-QCL analyzer showed a median precision (1σ) of 0.14 nmol mol-1 for N2O, 3.3 nmol mol-1 for CH4 and 0.36 µmol mol-1 for CO2 at sampling frequency of 10 Hz under the field conditions. Such precisions are better than, or comparable with, those of other commonly used closed-path or open-path gas analyzers, which are capable of measuring ony one or two ot the three gases. The detection limit of the EC system for measuring half-hourly fluxes were 0.05 nmol m-2 s-1 for N2O, 1.12 nmol m-2 s-1 for CH4 and 0.14 µmol m-2 s-1 for CO2. The results showed that 100% of the N2O, 85% of the CH4 and 96% of the CO2 fluxes were larger than the above detection limits. This study suggests that the EC technique using a closed-path gas analyzer with two quantum cascade lasers is qualified for reliable and simultaneous measurements of N2O, CH4 and CO2 fluxes from a subtropical cropland throughout the year. Moreover, EC method based on this type of gas analyzer provides an additional option for long-term and simultaneous flux measurements of the three greenhouse gases in a wide range of agricultural and natural ecosystems.

Greenhouse gas fluxes over managed grasslands in Central Europe.

Central European grasslands are characterized by a wide range of different management practices in close geographical proximity. Site-specific management strategies strongly affect the biosphere-atmosphere exchange of the three greenhouse gases (GHG) carbon dioxide (CO2 ), nitrous oxide (N2 O), and methane (CH4 ). The evaluation of environmental impacts at site level is challenging, because most in situ measurements focus on the quantification of CO2 exchange, while long-term N2 O and CH4 flux measurements at ecosystem scale remain scarce. Here, we synthesized ecosystem CO2 , N2 O, and CH4 fluxes from 14 managed grassland sites, quantified by eddy covariance or chamber techniques. We found that grasslands were on average a CO2 sink (-1,783 to -91 g CO2  m-2  year-1 ), but a N2 O source (18-638 g CO2 -eq. m-2  year-1 ), and either a CH4 sink or source (-9 to 488 g CO2 -eq. m-2  year-1 ). The net GHG balance (NGB) of nine sites where measurements of all three GHGs were available was found between -2,761 and -58 g CO2 -eq. m-2  year-1 , with N2 O and CH4 emissions offsetting concurrent CO2 uptake by on average 21 ± 6% across sites. The only positive NGB was found for one site during a restoration year with ploughing. The predictive power of soil parameters for N2 O and CH4 fluxes was generally low and varied considerably within years. However, after site-specific data normalization, we identified environmental conditions that indicated enhanced GHG source/sink activity ("sweet spots") and gave a good prediction of normalized overall fluxes across sites. The application of animal slurry to grasslands increased N2 O and CH4 emissions. The N2 O-N emission factor across sites was 1.8 ± 0.5%, but varied considerably at site level among the years (0.1%-8.6%). Although grassland management led to increased N2 O and CH4 emissions, the CO2 sink strength was generally the most dominant component of the annual GHG budget.

Urea deep placement reduces yield-scaled greenhouse gas (CH4 and N2O) and NO emissions from a ground cover rice production system.

Ground cover rice production system (GCRPS), i.e., paddy soils being covered by thin plastic films with soil moisture being maintained nearly saturated status, is a promising technology as increased yields are achieved with less irrigation water. However, increased soil aeration and temperature under GCRPS may cause pollution swapping in greenhouse gas (GHG) from CH4 to N2O emissions. A 2-year experiment was performed, taking traditional rice cultivation as a reference, to assess the impacts of N-fertilizer placement methods on CH4, N2O and NO emissions and rice yields under GCRPS. Averaging across all rice seasons and N-fertilizer treatments, the GHG emissions for GCRPS were 1973 kg CO2-eq ha-1 (or 256 kg CO2-eq Mg-1), which is significantly lower than that of traditional cultivation (4186 kg CO2-eq ha-1or 646 kg CO2-eq Mg-1). Furthermore, if urea was placed at a 10-15 cm soil depth instead of broadcasting, the yield-scaled GHG emissions from GCRPS were further reduced from 377 to 222 kg CO2-eq Mg-1, as N2O emissions greatly decreased while yields increased. Urea deep placement also reduced yield-scaled NO emissions by 54%. Therefore, GCRPS with urea deep placement is a climate- and environment-smart management, which allows for maximal rice yields at minimal GHG and NO emissions.

Improving rice production sustainability by reducing water demand and greenhouse gas emissions with biodegradable films.

In China, rice production is facing unprecedented challenges, including the increasing demand, looming water crisis and on-going climate change. Thus, producing more rice at lower environmental cost is required for future development, i.e., the use of less water and the production of fewer greenhouse gas (GHG) per unit of rice. Ground cover rice production systems (GCRPSs) could potentially address these concerns, although no studies have systematically and simultaneously evaluated the benefits of GCRPS regarding yields and considering water use and GHG emissions. This study reports the results of a 2-year study comparing conventional paddy and various GCRPS practices. Relative to conventional paddy, GCRPSs had greater rice yields and nitrogen use efficiencies (8.5% and 70%, respectively), required less irrigation (-64%) and resulted in less total CH4 and N2O emissions (-54%). On average, annual emission factors of N2O were 1.67% and 2.00% for conventional paddy and GCRPS, respectively. A cost-benefit analysis considering yields, GHG emissions, water demand and labor and mulching costs indicated GCRPSs are an environmentally and economically profitable technology. Furthermore, substituting the polyethylene film with a biodegradable film resulted in comparable benefits of yield and climate. Overall, GCRPSs, particularly with biodegradable films, provide a promising solution for farmers to secure or even increase yields while reducing the environmental footprint.

Greenhouse gas emissions and global warming potential of traditional and diversified tropical rice rotation systems.

Global rice agriculture will be increasingly challenged by water scarcity, while at the same time changes in demand (e.g. changes in diets or increasing demand for biofuels) will feed back on agricultural practices. These factors are changing traditional cropping patterns from double-rice cropping to the introduction of upland crops in the dry season. For a comprehensive assessment of greenhouse gas (GHG) balances, we measured methane (CH4 )/nitrous oxide (N2 O) emissions and agronomic parameters over 2.5 years in double-rice cropping (R-R) and paddy rice rotations diversified with either maize (R-M) or aerobic rice (R-A) in upland cultivation. Introduction of upland crops in the dry season reduced irrigation water use and CH4 emissions by 66-81% and 95-99%, respectively. Moreover, for practices including upland crops, CH4 emissions in the subsequent wet season with paddy rice were reduced by 54-60%. Although annual N2 O emissions increased two- to threefold in the diversified systems, the strong reduction in CH4 led to a significantly lower (P < 0.05) annual GWP (CH4  + N2 O) as compared to the traditional double-rice cropping system. Measurements of soil organic carbon (SOC) contents before and 3 years after the introduction of upland crop rotations indicated a SOC loss for the R-M system, while for the other systems SOC stocks were unaffected. This trend for R-M systems needs to be followed as it has significant consequences not only for the GWP balance but also with regard to soil fertility. Economic assessment showed a similar gross profit span for R-M and R-R, while gross profits for R-A were reduced as a consequence of lower productivity. Nevertheless, regarding a future increase in water scarcity, it can be expected that mixed lowland-upland systems will expand in SE Asia as water requirements were cut by more than half in both rotation systems with upland crops.

Automated online measurement of N2, N2O, NO, CO2, and CH4 emissions based on a gas-flow-soil-core technique.

The gas-flow-soil-core (GFSC) technique allows to directly measure emission rates of denitrification gases of incubated soil cores. However, the technique was still suffering some drawbacks such as inadequate accuracy due to asynchronous detection of dinitrogen (N2) and other gases and low measurement frequency. Furthermore, its application was limited due to intensive manual operation. To overcome these drawbacks, we updated the GFSC system as described by Wang et al. (2011) by (a) using both a chemiluminescent detector and a gas chromatograph detector to measure nitric oxide (NO), (b) synchronizing the measurements of N2, NO, nitrous oxide (N2O), carbon dioxide (CO2) and methane (CH4), and (c) fully automating the sampling/analysis of all the gases. These technical modifications significantly reduced labor demands by at least a factor of two, increased the measurement frequency from 3 to 6 times per day and resulted in remarkable improvements in measurement accuracy (with detection limits of 0.5, 0.01, 0.05, 2.3 and 0.2µgN or Ch(-1)kg(-1)ds, or 17, 0.3, 1.8, 82, and 6µgN or Cm(-2)h(-1), for N2, N2O, NO, CO2, and CH4, respectively). In some circumstances, the modified system measured significantly more N2 and CO2 and less N2O and NO because of the enhanced measurement frequency. The modified system distinguished the differences in emissions of the denitrification gases and CO2 due to a 20% change in initial carbon supplies. It also remarkably recovered approximately 90% of consumed nitrate during incubation. These performances validate the technical improvement, and indicate that the improved GFSC system may provide a powerful research tool for obtaining deeper insights into the processes of soil carbon and nitrogen transformation during denitrification.

Measurement of N2, N2O, NO, and CO2 emissions from soil with the gas-flow-soil-core technique.

Here we describe a newly designed system with three stand-alone working incubation vessels for simultaneous measurements of N(2), N(2)O, NO, and CO(2) emissions from soil. Due to the use of a new micro thermal conductivity detector and the redesign of vessels and gas sampling a so-far unmatched sensitivity (0.23 µg N(2)-N h(-1) kg(-1) ds or 8.1 µg N(2)-N m(-2) h(-1)) for detecting N(2) gas emissions and repeatability of experiments could be achieved. We further tested different incubation methods to improve the quantification of N(2) emission via denitrification following the initialization of soil anaerobiosis. The best results with regard to the establishment of a full N balance (i.e., the changes in mineral N content being offset by simultaneous emission of N gases) were obtained when the anaerobic soil incubation at 25 °C was preceded by soil gas exchange under aerobic conditions at a lower incubation temperature. The ratios of N and C gas emission changed very dynamically following the initialization of anaerobiosis. For soil NO(3)(-) contents of 50 mg N kg(-1) dry soil (ds) and dissolved organic carbon (DOC) concentrations of approximately 300 mg C kg(-1) ds, the cumulative emissions of N(2), N(2)O, and NO were 24.3 ± 0.1, 12.6 ± 0.4, and 10.1 ± 0.3 mg N kg(-1) ds, respectively. Thus, N gas emissions accounted (on average) for 46.2% (N(2)), 24.0% (N(2)O), and 19.2% (NO) of the observed changes in soil NO(3)(-). The maximum N(2) emission reached 1200 µg N h(-1) kg(-1) ds, whereas the peak emissions of N(2)O and NO were lower by a factor of 2-3. The overall N(2):N(2)O and NO:N(2)O molar ratios were 1.6-10.0 and 1.6-2.3, respectively. The measurement system provides a reliable tool for studying denitrification in soil because it offers insights into the dynamics and magnitude of gaseous N emissions due to denitrification under various incubation conditions.