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1.
Braz. j. microbiol ; Braz. j. microbiol;41(3): 707-717, Oct. 2010. ilus, tab
Artigo em Inglês | LILACS | ID: lil-549412

RESUMO

We studied the peptide-degrading anaerobic communities of methanogenic reactors from two mesophilic full-scale modified upflow anaerobic sludge blanket (UASB) reactors treating brewery wastewater in Colombia. Most probable number (MPN) counts varied between 7.1 x 10(8) and 6.6 x 10(9) bacteria/g volatile suspended solids VSS (Methanogenic Reactor 1) and 7.2 x 10(6) and 6.4 x 10(7) bacteria/g (VSS) (Methanogenic Reactor 2). Metabolites detected in the highest positive MPN dilutions in both reactors were mostly acetate, propionate, isovalerate and, in some cases, negligible concentrations of butyrate. Using the highest positive dilutions of MPN counts, 50 dominant strains were isolated from both reactors, and 12 strains were selected for sequencing their 16S rRNA gene based on their phenotypic characteristics. The small-subunit rRNA gene sequences indicated that these strains were affiliated to the families Propionibacteriaceae, Clostridiaceae and Syntrophomonadaceae in the low G + C gram-positive group and Desulfovibrio spp. in the class d-Proteobacteria. The main metabolites detected in the highest positive dilutions of MPN and the presence of Syntrophomonadaceae indicate the effect of the syntrophic associations on the bioconversion of these substrates in methanogenic reactors. Additionally, the potential utilization of external electron acceptors for the complete degradation of amino acids by Clostridium strains confirms the relevance of these acceptors in the transformation of peptides and amino acids in these systems.


Assuntos
Águas Residuárias , Sequência de Bases , Bactérias Anaeróbias Gram-Negativas/genética , Bactérias Anaeróbias Gram-Negativas/isolamento & purificação , Peptídeos/análise , Peptídeos/genética , Estabilidade de RNA , RNA Bacteriano , Reatores Biológicos Sequenciais , Metabolismo , Métodos , Métodos , Virulência
2.
Int J Syst Evol Microbiol ; 57(Pt 8): 1914-1918, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17684281

RESUMO

Strain ILE-2(T) was isolated from an upflow anaerobic sludge bed reactor treating brewery wastewater. The motile, non-sporulating, slightly curved cells (2-4 x 0.1 microm) stained Gram-negative and grew optimally at 42 degrees C and pH 7.1 with 0.5 % NaCl. The strain required yeast extract for growth and fermented Casamino acids, peptone, isoleucine, arginine, lysine, alanine, valine, glutamate, histidine, glutamine, methionine, malate, fumarate, glycerol and pyruvate to acetate, propionate and minor amounts of branched-chain fatty acids. Carbohydrates, formate, acetate, propionate, butyrate, isovalerate, methanol, ethanol, 1-propanol, butanol, lactate, succinate, starch, casein, gelatin, xylan and a number of other amino acids were not utilized. The DNA G+C content of strain ILE-2(T) was 52.7 mol%. 16S rRNA gene sequence analysis revealed that ILE-2(T) was distantly related to members of the genera Aminobacterium (83 % similarity) and Aminomonas (85 % similarity) in the family Syntrophomonadaceae, order Clostridiales, phylum Firmicutes. On the basis of the results of our polyphasic analysis, strain ILE-2(T) represents a novel species and genus within the family Syntrophomonadaceae, for which the name Aminiphilus circumscriptus gen. nov., sp. nov. is proposed. The type strain of Aminiphilus circumscriptus is ILE-2(T) (=DSM 16581(T) =JCM 14039(T)).


Assuntos
Clostridium/classificação , Clostridium/metabolismo , Esgotos/microbiologia , Aminoácidos/metabolismo , Anaerobiose , Reatores Biológicos , Clostridium/genética , Clostridium/isolamento & purificação , DNA Bacteriano , DNA Ribossômico/genética , Fermentação , Resíduos Industriais , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S/genética
3.
Int J Syst Evol Microbiol ; 52(Pt 5): 1715-1722, 2002 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-12361278

RESUMO

Strictly anaerobic, thermophilic bacteria (strains SL24T, SL25T, SL27, SL29 and SL32) were isolated from a deep, continental oil reservoir in Western Siberia (Russia). These motile, rod-shaped organisms were surrounded by a sheath-like structure, a feature characteristic of the Thermotogales. On the basis of partial 16S rDNA sequences (500 nucleotides), strains SL25T, SL27, SL29 and SL32 were identical. Therefore, only strains SL24T and SL25T were studied in detail. The optimum temperature for growth of both strains was 55 degrees C. Their optimum pH for growth was 7.5 and their optimum NaCl concentration was between 20 and 30 g l(-1). The novel isolates reduced elemental sulfur and cystine, but not thiosulfate or sulfate, to hydrogen sulfide. The G+C contents of the genomic DNA of strains SL24T and SL25T were respectively 35 and 33 mol%. Phylogenetically, both strains are most closely related to Petrotoga miotherma, there being 98.9-99.4% similarity between their 16S rDNA sequences. Phenotypic properties and DNA-DNA hybridization experiments indicate that the strains belong to two novel species, for which the names Petrotoga olearia (type strain SL24T = DSM 13574T = JCM 11234T) and Petrotoga sibirica (type strain SL25T= DSM 13575T = JCM 11235T) are proposed.


Assuntos
Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/classificação , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/isolamento & purificação , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/genética , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/genética , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/metabolismo , Temperatura Alta , Microscopia Eletrônica , Dados de Sequência Molecular , Petróleo/microbiologia , Fenótipo , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Sibéria
4.
Int J Syst Evol Microbiol ; 51(Pt 4): 1327-1334, 2001 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-11491329

RESUMO

Three strictly anaerobic, thermophilic bacteria (SL31T, SL30 and MLM39636) were isolated from a deep continental oil reservoir in Western Siberia (Russia). Following the mid-exponential phase of growth, the non-motile rod-shaped organisms were surrounded by a sheath-like structure. As DNA-DNA hybridizations showed that these strains were highly related genomically, only strain SL31T was studied in detail. The temperature range for growth of strain SL31T was between 45 and 75 degrees C, with optimum growth at 70 degrees C. Its optimum pH and NaCl concentration for growth were pH 7.5 and 20-30 g l(-1), respectively. The novel isolate reduced elemental sulfur and cystine, but not thiosulfate or sulfate, to hydrogen sulfide. The G+C content of the genomic DNA was 30.0 mol %. As determined by 16S rDNA sequence analysis, this organism belonged to the genus Thermosipho. DNA-DNA hybridization levels between strain SL31T and type strains of the previously described species of Thermosipho were less than 10%. On the basis of physiological and molecular properties, it is proposed that this organism should be placed in a new species, Thermosipho geolei sp. nov. The novel organism represents the first species of the genus Thermosipho that has been isolated from a petroleum reservoir. The type strain is SL31T ( = DSM 13256T = JCM 10986T).


Assuntos
Bactérias/classificação , Bactérias/isolamento & purificação , Bactérias/genética , Bactérias/metabolismo , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/genética , Resistência Microbiana a Medicamentos , Glucose/metabolismo , Microscopia Eletrônica , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Petróleo/microbiologia , Filogenia , Sibéria , Enxofre/metabolismo
5.
Int J Syst Evol Microbiol ; 50 Pt 3: 1259-1264, 2000 May.
Artigo em Inglês | MEDLINE | ID: mdl-10843071

RESUMO

A new peptide-degrading, strictly anaerobic bacterium, designated strain TMC4T, was isolated from an olive mill wastewater treatment digester. Cells of strain TMC4T were motile, rod-shaped (5-10 x 0.6-1.2 microm), stained Gram-positive and formed terminal to subterminal spores that distended the cells. Optimal growth occurred at 37 degrees C and pH 7 in an anaerobic basal medium containing 0.5% Casamino acids. Arginine, lysine, cysteine, methionine, histidine, serine, isoleucine, yeast extract, peptone, Biotrypcase, gelatin and crotonate also supported growth, but not carbohydrates, organic acids or alcohols. The end-products of degradation were: acetate and butyrate from lysine and crotonate; acetate, butyrate, H2 and CO2 from Biotrypcase, gelatin and peptone; acetate, alanine, H2 and CO2 from cysteine; acetate, H2 and CO2 from serine, cysteine and yeast extract; acetate and formate from histidine; propionate from methionine; methyl 2-butyrate, H2 and CO2 from isoleucine; acetate and ethanol from arginine; and acetate, propionate, butyrate, methyl 2-butyrate, H2 and CO2 from Casamino acids. The DNA G+C content of strain TMC4T was 31 mol%. Phylogeny based on 16S rRNA sequence analysis showed that strain TMC4T was a member of the low-G+C-content Gram-positive genus Clostridium, with the closest relative being Clostridium pascui (sequence similarity of 96 %). Due to considerable differences in genomic and phenotypic properties between strain TMC4T and those of its nearest relative, strain TMC4T is proposed as a new species of the genus Clostridium, Clostridium peptidivorans sp. nov. Strain TMC4T has been deposited in the DSMZ as strain DSM 12505T.


Assuntos
Clostridium/classificação , Resíduos Industriais , Peptídeos/metabolismo , Óleos de Plantas , Eliminação de Resíduos Líquidos , Aminoácidos/metabolismo , Composição de Bases , Clostridium/genética , Clostridium/isolamento & purificação , Clostridium/metabolismo , DNA Bacteriano/genética , DNA Ribossômico/genética , Fermentação , Dados de Sequência Molecular , Azeite de Oliva , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
6.
Int J Syst Evol Microbiol ; 50 Pt 1: 259-264, 2000 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-10826812

RESUMO

A novel, curved (0.3 x 4.0-5.0 microm), Gram-negative, non-sporulating, mesophilic bacterium, designated strain ILE-3T (T = type strain), was isolated from an anaerobic lagoon in a dairy wastewater treatment plant. Optimal growth occurred at 37 degrees C and pH 7.4 on a medium containing serine as an energy source and yeast extract. The strain was motile by means of one or two lateral flagella. It required yeast extract for growth on serine, glycine, threonine and pyruvate. Poor growth was obtained on cysteine, Casamino acids, biotrypcase, peptone and 2-oxoglutarate. In the presence of Methanobacterium formicicum, strain ILE-3T oxidized alanine, glutamate, leucine, isoleucine, valine and aspartate to a minor extent. The G+C content of the DNA was 44 mol%. Phylogenetic analysis of the 16S rRNA gene of strain ILE-3T indicated that it was related to Aminobacterium colombiense (95% similarity value). On the basis of the phenotypic and phylogenetic characteristics, strain ILE-3T is designated as a new species of the genus Aminobacterium, namely Aminobacterium mobile sp. nov. (= DSM 12262T).


Assuntos
Aminoácidos/metabolismo , Bactérias Anaeróbias Gram-Negativas/classificação , Bactérias Anaeróbias Gram-Negativas/metabolismo , Anaerobiose , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Indústria de Laticínios , Genes de RNAr , Bactérias Anaeróbias Gram-Negativas/fisiologia , Dados de Sequência Molecular , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Eliminação de Resíduos Líquidos , Microbiologia da Água
7.
Int J Syst Bacteriol ; 49 Pt 3: 1141-7, 1999 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10425772

RESUMO

A strictly anaerobic, halotolerant, spindle-shaped rod, designated strain SEBR 4211T, was isolated from an African saline oil-producing well. Cells stain Gram-positive, which was confirmed by electron microscopy observations. Strain SEBR 4211T was motile by means of one to four peritrichous flagella, had a G+C content of 43 mol% and grew optimally at 37 degrees C, pH 7.3, with 0 to 3% (w/v) NaCl. It utilized a limited number of carbohydrates (cellobiose, glucose, fructose, mannitol and ribose) and produced acetate, butyrate, CO2 and H2 as end products from glucose fermentation. It reduced thiosulfate to sulfide. In the presence of thiosulfate, a decrease in butyrate and an increase in acetate production was observed. Phylogenetically, strain SEBR 4211T was related to members of the low G+C Clostridiales order with Clostridium halophilum as the closest relative (16S rDNA sequence similarity of 90%). On the basis of phenotypic, genotypic and phylogenetic characteristics of the isolate, it is proposed to designate it as a new species of a new genus, Fusibacter gen. nov., as Fusibacter paucivorans sp. nov. The type strain is SEBR 4211T (= DSM 12116T).


Assuntos
Bactérias Anaeróbias/classificação , Bactérias Gram-Positivas/classificação , Tiossulfatos/metabolismo , Microbiologia da Água , Bactérias Anaeróbias/citologia , Bactérias Anaeróbias/isolamento & purificação , Bactérias Anaeróbias/fisiologia , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Genótipo , Bactérias Gram-Positivas/citologia , Bactérias Gram-Positivas/isolamento & purificação , Bactérias Gram-Positivas/fisiologia , Dados de Sequência Molecular , Oxirredução , Petróleo , Fenótipo , Filogenia , RNA Ribossômico 16S/genética
8.
Int J Syst Bacteriol ; 48 Pt 3: 821-8, 1998 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-9734036

RESUMO

Two irregular coccoid methanogens designated SEBR 4845T and FR1T were isolated from an oilfield in Alsace, France. Strain SEBR 4845T (T = type strain) is a hydrogenotrophic halotolerant methanogen, which grows optimally at 5% NaCI (w/v) and tolerates up to 12% NaCI. It does not use methylated compounds and therefore cannot be ascribed to any of the known genera of the halophilic methylotrophic methanogens. It differs from hydrogenotrophic members of the orders Methanococcales and Methanomicrobia les in the NaCI growth range (0-12% NaCI), which is the widest reported to data for any hydrogenotrophic methanogen. 16S rRNA gene sequence analysis indicated that strain SEBR 4845T is a novel isolate for which a new genus is proposed, Methanocalculus halotolerans gen. nov., sp. nov. (= OCM470T) that might be indigenous to the oilfield ecosystem. Strain FR1T (=OCM 471) is a moderately halophilic methanogen which growths optimally at 10% NaCI and tolerates up to 20% NaCI. It grows on trimethylamine and methanol as carbon and energy sources. The G+C content of its DNA is 43 mol%. It is therefore phenotypically and genotypically related to members of the genus Methanohalophilus. This report provides evidence that methylotrophic and hydrogenotrophic, but not aceticlastic methanogens are present in a saline subsurface oilfield environment, as already observed in surface saline to hypersaline environments.


Assuntos
Euryarchaeota/classificação , Sequência de Bases , DNA Ribossômico/química , Euryarchaeota/genética , Euryarchaeota/crescimento & desenvolvimento , Óleos Combustíveis , Dados de Sequência Molecular , RNA Ribossômico 16S/genética
9.
Syst Appl Microbiol ; 21(4): 498-504, 1998 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-9924817

RESUMO

A mesophilic strain of sulfate-reducing bacterium, designated ALA-3T (T = type strain), was isolated from an anaerobic lagoon of a dairy wastewater treatment plant. The curved, Gram-negative, non-sporeforming cells (0.2 x 3.0-4.0 microns) existed singly or in chains, and were motile by single polar flagella. Optimum growth occurred at 35 degrees C and pH 7.5 on a medium containing lactate and sulfate. Thiosulfate or sulfite but not elemental sulfur, nitrate, or fumarate could also replace sulfate as an electron acceptor. Formate, alanine, aspartate, leucine, isoleucine, valine, and methionine, H2/CO2 and ethanol also served as electron donors with sulfate as an electron acceptor. Pyruvate, casamino acids, peptone, serine, glycine, cysteine and threonine were fermented. Sulfite and thiosulfate were disproportionated to sulfate and sulfide. The G + C content of the DNA was 66 mol % G + C. Phylogenetic analysis revealed that Desulfovibrio africanus was the nearest relative (similarity of 89%). Strain ALA-3T is physiologically and phylogenetically different from other Desulfovibrio species, and is designated Desulfovibrio aminophilus sp. nov. (DSM 12254).


Assuntos
Desulfovibrio , Aminoácidos/metabolismo , Anaerobiose , DNA Bacteriano/genética , Desulfovibrio/classificação , Desulfovibrio/genética , Desulfovibrio/isolamento & purificação , Desulfovibrio/fisiologia , Microbiologia Ambiental , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S/genética , Esgotos/microbiologia , Sulfatos/química , Sulfatos/metabolismo , Temperatura
10.
Anaerobe ; 4(5): 241-50, 1998 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-16887649

RESUMO

A new gram-negative, non-sporulating, mesophilic, amino acid fermenting bacterium, designated strain ALA-1(T) (T = type strain), was isolated from an anaerobic lagoon of a dairy wastewater treatment plant. The strain is curved (3-4 microm x 0.2-0.3 microm) and occurs singly or in pairs. Optimum growth occurs at 37 degrees C and pH 7.3. The G+C content of the DNA is 46 mol %. The strain requires yeast extract for growth, grows poorly on casamino acids, peptones, cysteine, and alpha-ketoglutarate, but readily grows on serine, threonine, glycine and pyruvate. When cocultured with the hydrogenotrophic methanogen Methanobacterium formicicum, strain ALA-1(T) oxidized alanine, glutamate, leucine, isoleucine, valine, aspartate, and methionine. Phylogenetic analysis revealed that it forms a distinct and independent line of descent in the vicinity of Dethiosulfovibrio peptidovorans, Dictyoglomus thermophilum, and Anaerobaculum thermoterrenum which are members of the low G+C containing gram-positive bacteria. The phylogenetic results concur with the phenotypic and genomic data which reveal that it is a novel strain. Based on these findings, we designate strain ALA-1(T) as Aminobacterium colombiense (DSM 12261) gen. nov., sp. nov.

11.
FEMS Microbiol Lett ; 155(2): 185-91, 1997 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-9351200

RESUMO

An obligately anaerobic spirochete designated strain SEBR 4228T (T = type strain) was isolated from an oil field of Congo, Central Africa. The strain grew optimally with a sodium chloride concentration of 5% (sodium chloride concentration) growth range 1.0-10%) at 37 degrees C (growth temperature range 20-40 degrees C) and pH of 7.0-7.2 (pH growth range pH 5.5-8.0). Strain SEBR 4228T grew on carbohydrates (glucose, fructose, ribose, D-xylose, galactose, mannitol and mannose), glycerol, fumarate, peptides and yeast extract. Yeast extract was required for growth and could not be replaced by vitamins. It reduced thiosulfate and sulfur, to H2S. Glucose was oxidised to lactate, acetate, CO2 and H2S in the presence of thiosulfate but in its absence lactate, ethanol, CO2 and H2 were produced. Fumarate was fermented to acetate and succinate. The G + C content of strain SEBR 4228T was 50%. Strain SEBR 4228T was spiral shaped measuring 5-30 by 0.3-0.5 micron and was motile with a corkscrew-like motion. Electron microscopy revealed the presence of periplasmic flagella in a 1-2-1 arrangement. Strain SEBR 4228T possessed features typical of the members of the genus Spirochaeta. 16S rRNA sequence analysis revealed that it was closely related to Spirochaeta bajacaliforniensis (similarity 98.6%). The lack of DNA homology with S. bajacaliforniensis (38%), together with other phenotypic differences, indicated that strain SEBR 4228T is a new species, which we have designated Spirochaeta smaragdinae. The type strain is SEBR 4228T (= DSM 11293).


Assuntos
Spirochaeta/classificação , DNA Ribossômico/química , Petróleo , RNA Ribossômico 16S/genética , Spirochaeta/citologia , Spirochaeta/fisiologia
12.
Int J Syst Bacteriol ; 47(4): 1013-9, 1997 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-9336900

RESUMO

A new thermophilic, xylanolytic, strictly anaerobic, rod-shaped bacterium, strain SEBR 7054T, was isolated from an African oil-producing well. Based on the presence of an outer sheath (toga) and 16S rRNA sequence analysis data, this organism was identified as a member of the genus Thermotoga. Strain SEBR 7054T possessed lateral flagella, had a G + C content of 50 mol%, produced traces of ethanol from glucose but no lactate, and grew optimally in the presence of 0 to 0.2% NaCl at 70 degrees C. Its phenotypic and phylogenetic characteristics clearly differed from those reported for the five previously validly described Thermotoga species. Therefore, we propose that strain SEBR 7054T is a member of a new species of the genus Thermotoga, Thermotoga hypogea sp. nov. The type strain of T. hypogea is SEBR 7054 (= DSM 11164).


Assuntos
DNA Bacteriano/análise , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/classificação , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/genética , RNA Ribossômico 16S/análise , Composição de Bases , Meios de Cultivo Condicionados , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/crescimento & desenvolvimento , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/fisiologia , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/ultraestrutura , Testes de Sensibilidade Microbiana , Microscopia Eletrônica , Dados de Sequência Molecular
13.
Int J Syst Bacteriol ; 47(3): 818-24, 1997 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-9226912

RESUMO

A strictly anaerobic thiosulfate-reducing bacterium was isolated from a corroding offshore oil well in Congo and was designated strain SEBR 4207T. Pure culture of the strain induced a very active pitting corrosion of mild steel, with penetration rates of up to 4 mm per year. This constitutes the first experimental evidence of the involvement of thiosulfate reduction in microbial corrosion of steel. Strain SEBR 4207T cells were vibrios (3 to 5 by 1 microns), stained gram negative, and possessed lateral flagella. Spores were not detected. Optimum growth occurred in the presence of 3% NaCl at pH 7.0 and 42 degrees C. Strain SEBR 4207T utilized peptides and amino acids, but not sugars or fatty acids. It fermented serine, histidine, and Casamino Acids, whereas arginine, glutamate, leucine, isoleucine, alanine, valine, methionine, and asparagine were only used in the presence of thiosulfate. Peptides were fermented to acetate, isobutyrate, isovalerate, 2-methylbutyrate, H2, and CO2. The addition of either thiosulfate or sulfur but not sulfate increased peptide utilization, growth rate, and biomass; during growth, H2S was produced and a concomitant decrease in H2 was observed. The addition of either thiosulfate or sulfur also reversed H2 inhibition. 16S rRNA sequence analysis indicates that strain SEBR 4207T is distantly related to members of the genus Thermoanaerobacter (83% similarity). Because the phenotypic and phylogenetic characteristics cannot be assigned to any described genus, strain SEBR 4207T is designated as a new species of a new genus, Dethiosulfovibrio peptidovorans gen. nov., sp. nov. Strain SEBR 4207T has been deposited in the Deutsche Sammlung von Mikroorganismen und zellkulturen GmbH (= DSM 11002).


Assuntos
Bactérias Anaeróbias Gram-Negativas/classificação , Bactérias Redutoras de Enxofre/classificação , Microbiologia da Água , Técnicas Bacteriológicas , Congo , DNA Bacteriano/análise , Bactérias Anaeróbias Gram-Negativas/genética , Bactérias Anaeróbias Gram-Negativas/metabolismo , Dados de Sequência Molecular , Óleos , Filogenia , RNA Ribossômico 16S/análise , Sais/metabolismo , Bactérias Redutoras de Enxofre/genética , Bactérias Redutoras de Enxofre/metabolismo , Tiossulfatos/metabolismo
14.
FEMS Microbiol Lett ; 147(1): 51-6, 1997 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-9037763

RESUMO

A disc-shaped methanogenic bacterium designated strain SEBR 4847T (T = type strain) was isolated from a sample collected from an African offshore oil field. Strain SEBR 4847T was non-motile, had a G + C content of 50 mol% and produced methane from H2 + CO2, formate, and CO2 + propanol. Strain SEBR 4847T grew optimally at 37 degrees C; no growth was observed at 25 degrees C or 45 degrees C. It grew in the presence of up to 50 g/l NaCl; 10-30 g/l was required for optimal growth. The optimum pH for growth was 7.0. Doubling time was about 10 h under optimal conditions. Based on 16S rRNA sequence analysis, the isolate was identified as a new species of the genus Methanoplanus and designated Methanoplanus petrolearius sp. nov. The type strain is SEBR 4847T (= OCM 486).


Assuntos
Euryarchaeota/classificação , Euryarchaeota/isolamento & purificação , Microbiologia do Solo , Técnicas Bacteriológicas , Classificação , Meios de Cultura , Citosina , DNA Bacteriano/análise , Euryarchaeota/citologia , Guanina , Guiné , Dados de Sequência Molecular , Óleos , RNA Bacteriano/análise , RNA Ribossômico 16S/análise , Análise de Sequência de RNA
15.
Arch Microbiol ; 167(1): 38-45, 1997 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-9000340

RESUMO

The presence of one periplasmic [NiFe] hydrogenase, one periplasmic [Fe] hydrogenase, and one cytoplasmic NADP-reducing hydrogenase has been previously established in Desulfovibrio fructosovorans. In the present work, marker-exchange mutagenesis was performed to determine the function of the tetrameric NADP-reducing hydrogenase encoded by the hndA, B, C, and D genes. The mutations performed were not lethal to the cells, although the H2-dependent NADP reduction was completely abolished. The double-mutated DM4 (DeltahynABC, DeltahndD) strain was still able to grow on hydrogen plus sulfate as the sole energy source. The growth may have occurred under these culture conditions because of the presence of the remaining [Fe] hydrogenase. The cells grew differently on various substrates depending on whether fructose, lactate, or pyruvate was used in the presence of sulfate. The (hnd mutant growth rates were 25-70% lower than those of the wild-type strain, although the molar growth yield remained unchanged. By contrast, mutants devoid of both [NiFe] hydrogenase and NADP-reducing hydrogenase had 24-38% lower growth yields and showed a corresponding drop in the growth rates. We concluded that each of the three hydrogenases may contribute to the energy supply in D. fructosovorans and that the loss of one enzyme might be compensated for by another. However, the loss of two hydrogenases affected the phosphorylation accompanying the metabolism of fructose, lactate, and pyruvate.


Assuntos
Desulfovibrio/fisiologia , Hidrogenase/fisiologia , Trifosfato de Adenosina/metabolismo , Southern Blotting , Western Blotting , Desulfovibrio/genética , Desulfovibrio/crescimento & desenvolvimento , Hidrogenase/genética , Mutação , NADP/metabolismo
16.
Res Microbiol ; 147(3): 159-65, 1996.
Artigo em Inglês | MEDLINE | ID: mdl-8761734

RESUMO

During glucose and xylose fermentation, Thermoanaerobacter finnii was observed to produce lactate, acetate, H2 and CO2, with ethanol being the major end product. Thermoanaerobacter strain SEBR 5268, an isolate from an oil field, also produced a similar range of end products from glucose and xylose fermentation, with the exception that both ethanol and lactate were the major products of sugar metabolism. Both these strains were able to reduce thiosulphate to sulphide in the presence of these two substrates, with acetate being the dominant metabolite in that case. In addition, a faster growth rate and increased cell yield were obtained in the presence of thiosulphate, than in its absence. The higher concentrations of acetate produced in the presence of thiosulphate rather than without any electron acceptor indicated that more ATP was generated from substrate-level phosphorylation. These results have implications for our understanding of the breakdown of carbohydrates present in organic matter found in the natural ecological niches of Thermoanaerobacter species (sulphide-, elemental sulphur- or sulphate-rich thermal hot springs and oil fields).


Assuntos
Acetatos/metabolismo , Bactérias Anaeróbias/efeitos dos fármacos , Metabolismo Energético/efeitos dos fármacos , Glucose/metabolismo , Bacilos Gram-Positivos Asporogênicos Irregulares/efeitos dos fármacos , Tiossulfatos/farmacologia , Xilose/metabolismo , Bactérias Anaeróbias/crescimento & desenvolvimento , Bactérias Anaeróbias/metabolismo , Bacilos Gram-Positivos Asporogênicos Irregulares/crescimento & desenvolvimento , Bacilos Gram-Positivos Asporogênicos Irregulares/metabolismo , Técnicas In Vitro , Microbiologia da Água
17.
Int J Syst Bacteriol ; 45(2): 308-14, 1995 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-7537064

RESUMO

A thermophilic, glucose-fermenting, strictly anaerobic, rod-shaped bacterium, strain SEBR 6459T (T = type strain), was isolated from an African oil-producing well. This organism was identified as a member of the genus Thermotoga on the basis of the presence of the typical outer sheath-like structure (toga) and 16S rRNA signature sequences and its ability to grow on carbohydrates (glucose, arabinose, fructose, lactose, maltose, and xylose). Major differences in its 16S rRNA gene sequence, its lower optimum temperature for growth (66 degrees C), its sodium chloride range for growth (0 to 2.8%), its lack of lactate as an end product from glucose fermentation, and its peritrichous flagella indicate that strain SEBR 6459T is not similar to the three previously described Thermotoga species. Furthermore, this organism does not belong to any of the other genera related to the order Thermotogales that have been described. On the basis of these findings, we propose that this strain should be described as a new species, Thermotoga elfii. The type strain of T. elfii is SEBR 6459 (= DSM 9442).


Assuntos
Bactérias Anaeróbias Gram-Negativas/classificação , Petróleo/microbiologia , África , Meios de Cultura , Bactérias Anaeróbias Gram-Negativas/fisiologia , Bactérias Anaeróbias Gram-Negativas/ultraestrutura , Dados de Sequência Molecular , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Sulfatos/metabolismo , Enxofre/metabolismo , Tiossulfatos/metabolismo
18.
Biochim Biophys Acta ; 1076(1): 79-85, 1991 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-1986796

RESUMO

The amino acid sequence of a two (4Fe-4S) ferredoxin from the methanogenic bacterium Methanococcus thermolithotrophicus (FdMt) has been determined. This thermostable protein comprises 60 amino acid residues (Mr 6541) and two (4Fe-4S) clusters chelated to the protein through the eight cysteines. FdMt contains a relatively high number of lysines [5], threonines [4] and valines [10]. The three-dimensional molecular model generated from the Peptococcus aerogenes X-ray structure keeps the characteristic overall ferredoxin folding thanks to complementary substitutions of residues of the hydrophobic core. The major structural features of the model are the different environments of both clusters, and the patch of three lysines at one end of the molecule. The possible role of several structural factors in the thermostability of the protein is discussed.


Assuntos
Euryarchaeota/análise , Ferredoxinas/química , Sequência de Aminoácidos , Aminoácidos/análise , Ferredoxinas/análise , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Homologia de Sequência do Ácido Nucleico , Temperatura , Difração de Raios X
19.
J Bacteriol ; 171(5): 2384-90, 1989 May.
Artigo em Inglês | MEDLINE | ID: mdl-2540148

RESUMO

A ferredoxin has been isolated from the thermophilic methanogen Methanococcus thermolithotrophicus. The native protein was a monomer exhibiting a molecular weight of 7,262, calculated from the amino acid composition. Its absorption spectrum had two maxima at 390 and 283 nm, with an absorbance ratio A390/A283 of 0.79. The absorption at 390 nm (E = 29 mM-1 cm-1) and the content of iron of the protein are in agreement with the presence of two 4Fe-4S clusters in M. thermolithotrophicus ferredoxin. Its amino acid composition showed the presence of eight cysteine residues, which is the required number of cysteines for the binding of two 4Fe-4S clusters. The protein was characterized by the lack of histidine, arginine, and leucine and a high content of valine. It was unusually stable to high temperatures but not to oxygen. The ESR spectrum of the protein in the oxidized state showed a minor signal at g = 2.01, corresponding to an oxidized 3Fe-4S cluster. The protein, which was difficult to reduce with dithionite or reduced mediators, exhibited in its reduced state a spectrum typical of two interacting reduced 4Fe-4S clusters. M. thermolithotrophicus ferredoxin functioned as an electron acceptor for the CO dehydrogenase complex with an extract free of ferredoxin. No reaction was detected with F420 or hydrogenase.


Assuntos
Euryarchaeota/análise , Ferredoxinas/isolamento & purificação , Aminoácidos/análise , Espectroscopia de Ressonância de Spin Eletrônica , Euryarchaeota/fisiologia , Ferredoxinas/fisiologia , Temperatura Alta , Ferro/análise , Metronidazol/metabolismo , Peso Molecular , Oxirredução , Oxigênio/toxicidade , Análise Espectral , Enxofre/análise
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