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J Chem Phys ; 141(5): 055102, 2014 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-25106615

RESUMO

The N K-edge X-ray absorption near edge structure (XANES) spectra of the purine-containing nucleotide, guanosine 5'-monophosphate (GMP), in aqueous solution are measured under various pH conditions. The spectra show characteristic peaks, which originate from resonant excitations of N 1s electrons to π* orbitals inside the guanine moiety of GMP. The relative intensities of these peaks depend on the pH values of the solution. The pH dependence is explained by the core-level shift of N atoms at specific sites caused by protonation and deprotonation. The experimental spectra are compared with theoretical spectra calculated by using density functional theory for GMP and the other purine-containing nucleotides, adenosine 5'-monophosphate, and adenosine 5'-triphosphate. The N K-edge XANES spectra for all of these nucleotides are classified by the numbers of N atoms with particular chemical bonding characteristics in the purine moiety.


Assuntos
Modelos Químicos , Modelos Moleculares , Nitrogênio/química , Nucleotídeos/química , Purinas/química , Espectrometria por Raios X/métodos , Água/química , Sítios de Ligação , Simulação por Computador , Concentração de Íons de Hidrogênio , Soluções
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