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Syst Appl Microbiol ; 43(5): 126124, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32847790

RESUMO

Polyphasic taxonomic analysis was performed on a novel bacterium, designated UR159T, isolated in 2016 from human blood of a septic patient hospitalized in France. Preliminary 16S rRNA gene sequence-based phylogenetic analysis indicated that strain UR159T belonged to the family Flavobacteriaceae, forming a distinct phyletic line distantly related (<94% sequence similarity) to known species of the family. Further phenotypic, chemotaxonomic and genomic analyses were performed. Cells were non-motile, oxidase-negative, catalase-positive Gram-negative rods. It was strictly aerobic yielding yellow-pigmented colonies, and was metabolically rather inert. Major fatty acids were iso-branched fatty acids, predominantly iso-C15:0 (55.5%) and iso-C17:1ω9c (8.8%). Whole genome sequencing revealed a 2.3-Mbp genome encoding a total of 2262 putative genes with a genomic DNA G+C content at 37.6mol%. The average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values between strain UR159T and the most closely related members of the Flavobacteriaceae family were <75% and <39%, respectively, much below the established cut-offs for ANI (<95-96%) and isDDH (<70%) for species and genus delineation. Average Amino Acid Identity (AAI) percentages were also estimated and were lower than 65% (cut-off proposed for genus delineation for uncultivated prokaryotes) in all cases, except for F. marinum that was just at the limit (65.1%). Based on these findings, we propose it as a new genus and species, Avrilella dinanensis gen. nov., sp. nov. (type strain UR159T=CIP 111616T=DSM 105483T).


Assuntos
Sangue/microbiologia , Flavobacteriaceae/classificação , Flavobacteriaceae/isolamento & purificação , Sepse/microbiologia , Aerobiose , Idoso de 80 Anos ou mais , Aminoácidos/análise , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , Ácidos Graxos/análise , Feminino , Flavobacteriaceae/genética , Flavobacteriaceae/fisiologia , Genes Bacterianos , Genes de RNAr , Genoma Bacteriano , Genômica , Humanos , Fenótipo , Filogenia , Pigmentação , RNA Ribossômico 16S/genética , Sequenciamento Completo do Genoma
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