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1.
ACS Omega ; 9(7): 8464-8470, 2024 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-38405496

RESUMO

Long noncoding RNA (lncRNA) has been shown to participate in adipogenic differentiation of bone marrow-derived mesenchymal stem cells (BMSCs). In this study, we aimed to investigate the role of lncRNA-LOC646762 in adipogenic differentiation of BMSCs. Transcriptome sequencing revealed a positive correlation between LOC646762 transcription and expression of adipogenic marker genes in adipogenic differentiation. Moreover, LOC646762 overexpression did not negatively impact the cell proliferation of BMSCs. Besides, LOC646762 plays a crucial role in adipogenic differentiation, as evidenced by its positive correlation with adipogenic marker gene expression. Its possible interaction with its proposed target C/EBPß suggests its involvement in essential pathways governing adipogenesis. Collectively, our study outcomes provide valuable insights into the molecular mechanisms underlying the adipogenic differentiation of BMSCs and lay a strong foundation for further research in regenerative medicine.

2.
Phys Chem Chem Phys ; 25(8): 6295-6305, 2023 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-36762600

RESUMO

In recent years, iron-based ionic liquids (e.g. BmimFeCl4, Fe-IL) have been widely used in the catalytic oxidation removal of hydrogen sulfide owing to their excellent redox reversibility and stability. Nevertheless, the high viscosity and poor Fe3+ activity of BmimFeCl4 limit its large-scale industrial application. The addition of aprotic organic solvents to BmimFeCl4 is an effective strategy to enhance its mass transfer efficiency and catalytic oxidation desulfurization performance. In this work, the effects of two kinds of aprotic organic solvents, weak polar polyether alcohols (NHD, PEG200) and strong polar amides (DMAC, DMF, and NMP), on the density, viscosity, conductivity and ferric activity of Fe-IL were investigated. The Eyring equation fitted well for the relationship between the viscosity and the temperature of the composites. When the mass ratio of BmimFeCl4 to solvent was 7 : 3 at 298.2 K, the viscosity of BmimFeCl4/DMAC and BmimFeCl4/NHD was 8.67 mPa s and 27.19 mPa s, respectively. The excess molar volume (VE) and viscosity deviation (Δη) of the two composite systems were calculated and fitted using the Redlich-Kister equation. The study of VE implies that DMAC has stronger solvation to the BmimFeCl4 ion pairs, and NHD could cause a more obvious volume shrinkage. For the composites investigated, Δη of BmimFeCl4/DMAC is negative while that of BmimFeCl4/NHD is positive, showing that DMAC could significantly weaken the combination ability of [Bmim]+ and [FeCl4]-, and NHD may form a stronger interaction with [Bmim]+. The FT-IR spectra and DFT calculations demonstrated that both polyether alcohol and amide could interact with C2-H on [Bmim]+. The CV curves and the MK charges show that the addition of aprotic polar solvents could effectively improve the activity of Fe3+ under the action of a hydrogen bond, and the effect of amide solvents on the activation of Fe3+ is stronger than that of polyether alcohol solvents. In conclusion, it is found that the composites with stronger ferric activity have much better catalytic oxidation ability for the conversion performance of hydrogen sulfide, and the the interactions induced by the molecular weight and the polarity of the solvent have a significant effect on the configuration of the Fe-IL ion pairs.

3.
J Orthop Surg Res ; 17(1): 555, 2022 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-36539815

RESUMO

PURPOSE: Intervertebral disc degeneration (IDD) is one of the main causes of low back pain, which not only affects patients' life quality, but also places a great burden on the public health system. Recently, ginsenoside Rg1 has been found to act in IDD; however, the mechanism is still unclear. The purpose of this study is to explore the function of ginsenoside Rg1 and its molecular mechanism in IDD. METHODS: The rat model of IDD and nucleus pulposus (NP) experimental groups treated with ginsenoside Rg1 was constructed for investing the role of ginsenoside Rg1 in IDD rats. In the in vitro and in vivo study, the histological morphological changes, motor threshold (MT), inflammatory factors, oxidative stress, apoptosis and expression of the YAP1/TAZ signaling pathway-related proteins of the intervertebral discs (IVD) were measured by histological staining, mechanical and thermal stimulation, ELISA, qRT-PCR, flow cytometry, and western blot, respectively. RESULTS: Ginsenoside Rg1 significantly increased the threshold for mechanical and thermal stimulation and alleviated histological changes in IDD rats. Ginsenoside Rg1 had a significant inhibitory effect on the secretion level of inflammatory factors, redox activity, extracellular matrix (ECM) degradation in IVD tissue and NP cells, and apoptosis in NP cells. Further investigation revealed that ginsenoside Rg1 significantly inhibited the expression of YAP1/TAZ signaling pathway-related proteins. Additionally, the above inhibitory effect of ginsenoside Rg1 on IDD progression was concentration-dependent, that is, the highest concentration of ginsenoside Rg1 was most effective. CONCLUSION: Ginsenoside Rg1 inhibits IDD progression by suppressing the activation of YAP1/TAZ signaling pathway. This means that ginsenoside Rg1 has the potential to treat IDD.


Assuntos
Degeneração do Disco Intervertebral , Disco Intervertebral , Núcleo Pulposo , Ratos , Animais , Degeneração do Disco Intervertebral/patologia , Apoptose , Inflamação/metabolismo , Matriz Extracelular/metabolismo
4.
Int J Rheum Dis ; 25(12): 1416-1423, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36106579

RESUMO

AIM: To investigate the role of Lin28A in ovariectomy-induced osteoporosis and to elucidate the underlying molecular mechanism. METHODS: Bilateral ovariectomy was conducted to generate an ovariectomy (OVX) rat model. Western blotting was performed to assess the relative expression levels of Lin28A, osteocalcin (OCN), runt-related transcription factor 2 (RUNX2), adenosine monophosphate-activated protein kinase (AMPK) and phosphorylated AMPK (p-AMPK) proteins. Enzyme-linked immunosorbent assays were performed to detect the serum levels of calcium, E2, alkaline phosphatase (ALP) and interleukin (IL)-1ß. Three-point bending test was used to assess biomechanical parameters of left femoral diaphysis. Hematoxylin and eosin (HE) staining was conducted to detect the trabecular structure of bone tissue. Dihydroethidium assay kit was used to measure the intracellular reactive oxygen species (ROS) level in osteoclasts. Alizarin red staining revealed the calcium deposit in bone marrow stromal cells (BMSC). RESULTS: The expression levels of Lin28A, OCN, RUNX2, AMPK and p-AMPK proteins were significantly decreased in OVX rats. The serum levels of calcium, E2, ALP and IL-1ß were significantly declined in OVX rats. Biomechanical parameters of left femoral diaphysis were significantly decreased in OVX rats. OVX-induced trabecular abnormalities. ROS level was dramatically increased in the bone tissue of OVX rats, and calcium deposit was dramatically decreased in BMSC cells of OVX rats. These effects induced by OVX could be prevented by overexpression of Lin28A. CONCLUSION: Lin28A alleviates ovariectomy-induced osteoporosis through activation of AMPK pathway in rats.


Assuntos
Subunidade alfa 1 de Fator de Ligação ao Core , Osteoporose , Humanos , Feminino , Ratos , Animais , Subunidade alfa 1 de Fator de Ligação ao Core/metabolismo , Proteínas Quinases Ativadas por AMP/metabolismo , Proteínas Quinases Ativadas por AMP/farmacologia , Espécies Reativas de Oxigênio/metabolismo , Cálcio/metabolismo , Ratos Sprague-Dawley , Osteoporose/etiologia , Osteoporose/prevenção & controle , Ovariectomia , Fosfatase Alcalina/metabolismo , Densidade Óssea , Proteínas de Ligação a RNA/genética
5.
BMC Med Genomics ; 14(1): 53, 2021 02 23.
Artigo em Inglês | MEDLINE | ID: mdl-33622322

RESUMO

BACKGROUND: Cleft lip with or without cleft palate (CL/P) is the most common craniofacial anomaly with a high incidence of live births. The specific pathogenesis of CL/P is still unclear, although plenty of studies have been conducted. Variations of tumor protein 63 (TP63) was reported to be related to the phenotype of CL/P. The case discussed in this report involves a pedigree with mutation at TP63 gene, and the variation was not reported before. CASE PRESENTATION: A Chinese pedigree with CL/P was collected in this study. The proband is a 3-year-old boy with the phenotype of CL/P, while his global development and intelligence are normal. After two CL/P repair operations, he looks almost normal. The proband's uncle and grandmother both have the phenotype of CL/P. Cytogenetic analysis and chromosomal microarray analysis (CMA) were performed, followed by whole exome sequencing (WES) and sanger validation. Analysis of WES revealed a variant of C>T at nucleotide position 1324 (1324C>T) of TP63 gene, possibly producing a truncated protein with a premature stop codon at amino acid position 442 (p.Q442*). This mutation was localized at the oligomerization domain (OD) of TP63 and might impair the capacity of p63 oligomerization. CONCLUSION: The mutation in TP63 was recognized to be the possible cause of the phenotype of CL/P in this pedigree. This report provides some evidence for the clinical diagnosis of CL/P. And our study also provides clinical evidence for the molecular mechanism of TP63 gene causing nonsyndromic cleft lip with or without cleft palate (NSCL/P).


Assuntos
Fenda Labial , Pré-Escolar , Predisposição Genética para Doença , Humanos , Linhagem , Fenótipo
6.
Oncol Lett ; 20(2): 1400-1408, 2020 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-32724382

RESUMO

Osteosarcoma is the most prevalent primary bone malignancy in children and adolescents. Neoadjuvant chemotherapy combined with surgical resection, the current standard treatment of osteosarcoma, is associated with a 5-year survival rate of only ~70%. Therefore, it is necessary to identify new, more effective treatment strategies for patients with this lethal disease. Enoxacin is a highly effective broad-spectrum fluoroquinolone antibiotic with low toxicity. The drug inhibits the growth and metastasis of numerous tumour types, but its efficacy has not been studied in osteosarcoma. This study assessed the antitumour effects of enoxacin in osteosarcoma 143B cells and in a murine tumour xenograft model. Enoxacin inhibited the proliferation, invasion and migration of 143B cells, as well as inducing their apoptosis. These effects were thought to be mediated by downregulation of Bcl-xL, Bxl-2, matrix metalloproteinase (MMP)2 and MMP9 expression. Enoxacin also significantly impaired the growth of bone tumours in nude mice without affecting their liver or kidney function, or blood cell count. Collectively, these results indicate that enoxacin is a promising new drug for osteosarcoma that warrants further evaluation in clinical studies.

7.
BMC Musculoskelet Disord ; 20(1): 550, 2019 Nov 18.
Artigo em Inglês | MEDLINE | ID: mdl-31739803

RESUMO

BACKGROUND: This meta-analysis aimed to compare the clinical outcomes and complications of minimally invasive plate osteosynthesis (MIPO) and open reduction-internal fixation (ORIF) in patients with proximal humeral fractures. METHODS: We searched PubMed, EMBASE, Ovid, and the Cochrane Library to identify all relevant studies from inception to April 2019. Cochrane Collaboration's Review Manage 5.3 was used for meta-analysis. RESULTS: Sixteen studies involving 1050 patients (464 patients in the MIPO group and 586 patients in the ORIF group) were finally included. According to the meta-analysis, MIPO was superior to ORIF in operation time, blood loss, postoperative pain, fracture union time, and constant score. However, MIPO was associated with more exposure to radiation and axillary nerve injury. No significant differences were found in length of hospital stays and complication except for axillary nerve injury. CONCLUSION: The present evidence indicates that compared to ORIF, MIPO had advantages in functional outcomes, operation time, blood loss, postoperative pain, and fracture union time for the treatment of PHFs. However, the MIPO technique had a higher rate of axillary nerve injury and longer radiation time compared to ORIF.


Assuntos
Placas Ósseas , Fixação Interna de Fraturas , Consolidação da Fratura , Úmero/cirurgia , Procedimentos Cirúrgicos Minimamente Invasivos/instrumentação , Redução Aberta , Osseointegração , Fraturas do Ombro/cirurgia , Idoso , Feminino , Fixação Interna de Fraturas/efeitos adversos , Humanos , Úmero/diagnóstico por imagem , Úmero/lesões , Úmero/fisiopatologia , Masculino , Pessoa de Meia-Idade , Procedimentos Cirúrgicos Minimamente Invasivos/efeitos adversos , Redução Aberta/efeitos adversos , Traumatismos dos Nervos Periféricos/etiologia , Fatores de Risco , Fraturas do Ombro/diagnóstico por imagem , Fraturas do Ombro/fisiopatologia , Fatores de Tempo , Resultado do Tratamento
8.
Cancer Res ; 77(21): e62-e66, 2017 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-29092942

RESUMO

Patient-derived tumor xenograft (PDX) mouse models have emerged as an important oncology research platform to study tumor evolution, mechanisms of drug response and resistance, and tailoring chemotherapeutic approaches for individual patients. The lack of robust standards for reporting on PDX models has hampered the ability of researchers to find relevant PDX models and associated data. Here we present the PDX models minimal information standard (PDX-MI) for reporting on the generation, quality assurance, and use of PDX models. PDX-MI defines the minimal information for describing the clinical attributes of a patient's tumor, the processes of implantation and passaging of tumors in a host mouse strain, quality assurance methods, and the use of PDX models in cancer research. Adherence to PDX-MI standards will facilitate accurate search results for oncology models and their associated data across distributed repository databases and promote reproducibility in research studies using these models. Cancer Res; 77(21); e62-66. ©2017 AACR.


Assuntos
Neoplasias , Ensaios Antitumorais Modelo de Xenoenxerto/estatística & dados numéricos , Animais , Bases de Dados como Assunto , Modelos Animais de Doenças , Humanos , Camundongos , Neoplasias/tratamento farmacológico , Neoplasias/genética , Pacientes
9.
Chin Med J (Engl) ; 120(14): 1236-40, 2007 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-17697574

RESUMO

BACKGROUND: Recent studies showed that aminoglycosides destroyed the cochlear cells and induced ototoxicity by producing reactive oxygen species, including free radicals in the mitochondria, damaging the membrane of mitochondria and resulting in apoptotic cell death. Bcl-x(L) is a well characterized anti-apoptotic member of the Bcl-2 family. The aim of this study was to determine the potential cochlear protective effect of Bcl-x(L) as a therapeutic agent in the murine model of aminoglycoside ototoxicity. METHODS: Serotype 2 of adeno-associated virus (AAV2) as a vector encoding the mouse Bcl-x(L) gene was injected into mice cochleae prior to injection of kanamycin. Bcl-x(L) expression in vitro and in vivo was examined with Western blotting and immunohistochemistry separately. Cochlear dissection and auditory steady state responses were checked to evaluate the cochlear structure and function. RESULTS: The animals in the AAV2-Bcl-x(L)/kanamycin group displayed better auditory steady state responses hearing thresholds and cochlear structure than those in the artificial perilymph/kanamycin or AAV2-enhanced humanized green fluorescent protein/kanamycin control group at all tested frequencies. The auditory steady state responses hearing thresholds and cochlear structure in the inoculated side were better than that in the contralateral side. CONCLUSIONS: AAV2-Bcl-x(L) afforded significant preservation of the cochlear hair cells against ototoxic insults and protected the cochlear function. AAV2-mediated Bcl-x(L) might be an approach with respect to potential therapeutic application in the cochlear degeneration.


Assuntos
Aminoglicosídeos/toxicidade , Antibacterianos/toxicidade , Dependovirus/genética , Terapia Genética , Perda Auditiva/induzido quimicamente , Proteína bcl-X/genética , Animais , Cóclea/efeitos dos fármacos , Cóclea/fisiologia , Feminino , Canamicina/toxicidade , Camundongos , Camundongos Endogâmicos C57BL
10.
Artigo em Chinês | MEDLINE | ID: mdl-17283529

Assuntos
Otite Média , Humanos
11.
Contraception ; 69(6): 505-11, 2004 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15157798

RESUMO

The implant containing Nestorone is a promising long-acting contraceptive especially suitable for lactating women. In this study, two experiments were designed to observe the effect of Nestorone on the gonadotropic cells in pituitary of rats for analyzing its antiovulation mechanism. In the first experiment, the ED50 of Nestorone on inhibiting ovulation was found to be 1.32 mg/kg. The serum luteinizing hormone (LH) levels were significantly lower 60 h after being treated with Nestorone at 8:30-9:00 a.m. on Day 2 (D2) of estrus. Image analysis showed that the average size of the LH cells in groups treated with Nestorone at 2 or 4 mg/kg was larger than that of the control. In the group treated with 4 mg/kg, most of gonadotropic cells were regular round in shape. And, abundant granules in cytoplasm were found in those cells, which indicated that the LH stored in cells was not released. In the second experiment, the rats were treated with Nestorone at 5 mg/kg at 11:30-12:00 a.m. on D2 of estrus. The normal or higher expression of LHbeta mRNA in pituitary suggested that the synthesis of LH was not inhibited by the treatment with Nestorone. The expression of PR mRNA in pituitary was significantly lower than that of the control at 33 h after treatment. This might be a direct effect of Nestorone, since there were no differences in the serum E2 and P4 levels between the treated and the control group. It is concluded that Nestorone prevents ovulation through inhibition of LH secretion and it has no effect on synthesis of LH. Progesterone receptors in pituitary might be involved in this process, but further study is needed to gain more evidence.


Assuntos
Anticoncepcionais Femininos/farmacologia , Norprogesteronas/farmacologia , Ovulação/efeitos dos fármacos , Hipófise/efeitos dos fármacos , Animais , Primers do DNA , Relação Dose-Resposta a Droga , Implantes de Medicamento/farmacologia , Feminino , Hormônio Liberador de Gonadotropina/sangue , Hormônio Liberador de Gonadotropina/efeitos dos fármacos , Hormônio Liberador de Gonadotropina/genética , Hormônio Luteinizante Subunidade beta/sangue , Hormônio Luteinizante Subunidade beta/efeitos dos fármacos , Hormônio Luteinizante Subunidade beta/genética , Hipófise/citologia , RNA Mensageiro/análise , Ratos , Ratos Sprague-Dawley , Receptores de Progesterona/sangue , Receptores de Progesterona/efeitos dos fármacos , Receptores de Progesterona/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa
12.
Oncogene ; 22(47): 7316-39, 2003 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-14576841

RESUMO

Antiestrogens include agents such as tamoxifen, toremifene, raloxifene, and fulvestrant. Currently, tamoxifen is the only drug approved for use in breast cancer chemoprevention, and it remains the treatment of choice for most women with hormone receptor positive, invasive breast carcinoma. While antiestrogens have been available since the early 1970s, we still do not fully understand their mechanisms of action and resistance. Essentially, two forms of antiestrogen resistance occur: de novo resistance and acquired resistance. Absence of estrogen receptor (ER) expression is the most common de novo resistance mechanism, whereas a complete loss of ER expression is not common in acquired resistance. Antiestrogen unresponsiveness appears to be the major acquired resistance phenotype, with a switch to an antiestrogen-stimulated growth being a minor phenotype. Since antiestrogens compete with estrogens for binding to ER, clinical response to antiestrogens may be affected by exogenous estrogenic exposures. Such exposures include estrogenic hormone replacement therapies and dietary and environmental exposures that directly or indirectly increase a tumor's estrogenic environment. Whether antiestrogen resistance can be conferred by a switch from predominantly ERalpha to ERbeta expression remains unanswered, but predicting response to antiestrogen therapy requires only measurement of ERalpha expression. The role of altered receptor coactivator or corepressor expression in antiestrogen resistance also is unclear, and understanding their roles may be confounded by their ubiquitous expression and functional redundancy. We have proposed a gene network approach to exploring the mechanistic aspects of antiestrogen resistance. Using transcriptome and proteome analyses, we have begun to identify candidate genes that comprise one component of a larger, putative gene network. These candidate genes include NFkappaB, interferon regulatory factor-1, nucleophosmin, and the X-box binding protein-1. The network also may involve signaling through ras and MAPK, implicating crosstalk with growth factors and cytokines. Ultimately, signaling affects the expression/function of the proliferation and/or apoptotic machineries.


Assuntos
Neoplasias da Mama/tratamento farmacológico , Resistencia a Medicamentos Antineoplásicos , Moduladores de Receptor Estrogênico/farmacologia , Receptores de Estrogênio/metabolismo , Transdução de Sinais/efeitos dos fármacos , Neoplasias da Mama/genética , Neoplasias da Mama/metabolismo , Neoplasias da Mama/patologia , Moduladores de Receptor Estrogênico/uso terapêutico , Estrogênios/metabolismo , Regulação Neoplásica da Expressão Gênica/efeitos dos fármacos , Humanos , Tamoxifeno/farmacologia
13.
Science ; 300(5620): 767-72, 2003 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-12690205

RESUMO

DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical genetic data, including 440 chromosome rearrangement breakpoints associated with disease. This approach enabled the discovery of candidate genes for developmental diseases including autism.


Assuntos
Cromossomos Humanos Par 7/genética , Análise de Sequência de DNA , Animais , Transtorno Autístico/genética , Aberrações Cromossômicas , Sítios Frágeis do Cromossomo , Fragilidade Cromossômica , Mapeamento Cromossômico , Biologia Computacional , Anormalidades Congênitas/genética , Ilhas de CpG , DNA Complementar , Bases de Dados Genéticas , Eucromatina/genética , Etiquetas de Sequências Expressas , Duplicação Gênica , Homologia de Genes , Doenças Genéticas Inatas/genética , Impressão Genômica , Humanos , Hibridização in Situ Fluorescente , Deformidades Congênitas dos Membros/genética , Camundongos , Dados de Sequência Molecular , Mutação , Neoplasias/genética , Pseudogenes , RNA/genética , Retroelementos , Síndrome de Williams/genética
14.
Cancer Res ; 62(12): 3428-37, 2002 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-12067985

RESUMO

To identify genes associated with survival from antiestrogens, both serial analysis of geneexpression and gene expression microarrays were used to explore the transcriptomes of antiestrogen-responsive (MCF7/LCC1) and -resistant variants(MCF7/LCC9) of the MCF-7 human breast cancer cell line. Structure of the gene microarray expression data was visualized at the top level using a novel algorithm that derives the first three principal components,fitted to the antiestrogen-resistant and -responsive gene expression data, from Fisher's information matrix. The differential regulation of several candidate genes was confirmed. Functional studies of the basal expression and endocrine regulation of transcriptional activation of implicated transcription factors were studied using promoter-reporter assays. The putative tumor suppressor interferon regulatory factor-1 is down-regulated in resistant cells, whereas its nucleolar phosphoprotein inhibitor nucleophosmin is up-regulated. Resistant cells also up-regulate the transcriptional activation of cyclic AMP response element (CRE) binding and nuclear factor kappaB (NFkappaB) while down-regulating epidermal growth factor receptor protein expression. Inhibition of NFkappaB activity by ICI 182,780 is lost in resistant cells, but CRE activity is not regulated by ICI 182,780 in either responsive or resistant cells. Parthenolide, a potent and specific inhibitor of NFkappaB, inhibits the anchorage-dependent proliferation of antiestrogen-resistant but not antiestrogen-responsive cells. This observation implies a greater reliance on their increased NFkappaB signaling for proliferation in cells that have survived prolonged exposure to ICI 182,780. These data from serial analysis of gene expression and gene microarray studies implicate changes in a novel signaling pathway, involving interferon regulatory factor-1, nucleophosmin, NFkappaB, and CRE binding in cell survival after antiestrogen exposure. Cells can up-regulate some estrogen-responsive genes while concurrently losing the ability of antiestrogens to regulate their expression. Signaling pathways that are not regulated by estrogens also can be up-regulated. Thus, some breast cancer cells may survive antiestrogen treatment by bypassing specific growth inhibitory signals induced by antagonist-occupied estrogen receptors.


Assuntos
Neoplasias da Mama/genética , Proteínas de Ligação a DNA/fisiologia , Estradiol/análogos & derivados , Estradiol/farmacologia , Antagonistas de Estrogênios/farmacologia , Neoplasias Hormônio-Dependentes/genética , Fatores de Transcrição/fisiologia , Animais , Neoplasias da Mama/tratamento farmacológico , Neoplasias da Mama/metabolismo , Proteína de Ligação ao Elemento de Resposta ao AMP Cíclico/biossíntese , Proteína de Ligação ao Elemento de Resposta ao AMP Cíclico/genética , Proteína de Ligação ao Elemento de Resposta ao AMP Cíclico/metabolismo , Proteínas de Ligação a DNA/biossíntese , Proteínas de Ligação a DNA/genética , Resistencia a Medicamentos Antineoplásicos , Receptores ErbB/biossíntese , Receptores ErbB/genética , Estrogênios/fisiologia , Fulvestranto , Perfilação da Expressão Gênica , Regulação Neoplásica da Expressão Gênica , Humanos , Fator Regulador 1 de Interferon , Camundongos , Camundongos Nus , NF-kappa B/antagonistas & inibidores , NF-kappa B/biossíntese , NF-kappa B/genética , NF-kappa B/fisiologia , Neoplasias Hormônio-Dependentes/tratamento farmacológico , Neoplasias Hormônio-Dependentes/metabolismo , Proteínas Nucleares/biossíntese , Proteínas Nucleares/genética , Proteínas Nucleares/fisiologia , Nucleofosmina , Análise de Sequência com Séries de Oligonucleotídeos , Fosfoproteínas/biossíntese , Fosfoproteínas/genética , Fosfoproteínas/fisiologia , Transdução de Sinais/genética , Fatores de Transcrição/biossíntese , Fatores de Transcrição/genética , Ativação Transcricional , Células Tumorais Cultivadas
15.
IEEE Trans Inf Technol Biomed ; 6(1): 29-37, 2002 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11936594

RESUMO

This paper describes a new approach to normalizing microarray expression data. The novel feature is to unify the tasks of estimating normalization coefficients and identifying control gene set. Unification is realized by constructing a window function over the scatter plot defining the subset of constantly expressed genes and by affecting optimization using an iterative procedure. The structure of window function gates contributions to the control gene set used to estimate normalization coefficients. This window measures the consistency of the matched neighborhoods in the scatter plot and provides a means of rejecting control gene outliers. The recovery of normalizational regression and control gene selection are interleaved and are realized by applying coupled operations to the mean square error function. In this way, the two processes bootstrap one another. We evaluate the technique on real microarray data from breast cancer cell lines and complement the experiment with a data cluster visualization study.


Assuntos
DNA Complementar , Análise de Sequência com Séries de Oligonucleotídeos , Algoritmos
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