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Epigenomics ; 10(3): 277-288, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29264942

RESUMO

AIM: To develop a web tool for survival analysis based on CpG methylation patterns. MATERIALS & METHODS: We utilized methylome data from 'The Cancer Genome Atlas' and used the Cox proportional-hazards model to develop an interactive web interface for survival analysis. RESULTS: MethSurv enables survival analysis for a CpG located in or around the proximity of a query gene. For further mining, cluster analysis for a query gene to associate methylation patterns with clinical characteristics and browsing of top biomarkers for each cancer type are provided. MethSurv includes 7358 methylomes from 25 different human cancers. CONCLUSION: The MethSurv tool is a valuable platform for the researchers without programming skills to perform the initial assessment of methylation-based cancer biomarkers.


Assuntos
Biologia Computacional/métodos , Metilação de DNA , DNA de Neoplasias/genética , Epigênese Genética , Neoplasias/genética , Software , Atlas como Assunto , Análise por Conglomerados , Ilhas de CpG , DNA de Neoplasias/metabolismo , Mineração de Dados , Genoma Humano , Humanos , Estimativa de Kaplan-Meier , Anotação de Sequência Molecular , Neoplasias/diagnóstico , Neoplasias/metabolismo , Neoplasias/mortalidade , Modelos de Riscos Proporcionais
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