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1.
Photosynth Res ; 152(2): 135-151, 2022 May.
Artigo em Inglês | MEDLINE | ID: mdl-34985636

RESUMO

Photosystem II (PSII) performs oxidation of water and reduction of plastoquinone through light-induced electron transfer. Electron transfer reactions at individual redox cofactors are controlled by their redox potentials, and the forward and backward electron flows in PSII are regulated by tuning them. It is, thus, crucial to accurately estimate the redox potentials of the cofactors and their shifts by environmental changes to understand the regulatory mechanisms in PSII. Fourier-transform infrared (FTIR) spectroelectrochemistry combined with a light-induced difference technique is a powerful method to investigate the mechanisms of the redox reactions in PSII. In this review, we introduce the methodology and the application of this method in the studies of the iron-quinone complex, which consists of two plastoquinone molecules, QA and QB, and the non-heme iron, on the electron-acceptor side of PSII. It is shown that FTIR spectroelectrochemistry is a useful method not only for estimating the redox potentials but also for detecting the reactions of nearby amino-acid residues coupled with the redox reactions.


Assuntos
Complexo de Proteína do Fotossistema II , Plastoquinona , Transporte de Elétrons , Elétrons , Ferro , Oxirredução , Quinonas , Espectroscopia de Infravermelho com Transformada de Fourier
2.
Biochemistry ; 60(27): 2170-2178, 2021 07 13.
Artigo em Inglês | MEDLINE | ID: mdl-34181388

RESUMO

The non-heme iron that bridges the two plastoquinone electron acceptors, QA and QB, in photosystem II (PSII) is known to have a redox potential (Em) of ∼+400 mV with a pH dependence of ∼-60 mV/pH. However, titratable amino acid residues that are coupled to the redox reaction of the non-heme ion and responsible for its pH dependence remain unidentified. In this study, to clarify the mechanism of the pH dependent change of Em(Fe2+/Fe3+), we investigated the protonation structures of amino acid residues correlated with the pH-induced Em(Fe2+/Fe3+) changes using Fourier transform infrared (FTIR) spectroelectrochemistry combined with the attenuated total reflection (ATR) and light-induced difference techniques. Flash-induced Fe2+/Fe3+ ATR-FTIR difference spectra obtained at different electrode potentials in the pH range of 5.0-8.5 showed a linear pH dependence of Em(Fe2+/Fe3+) with a slope of -52 mV/pH close to the theoretical value at 10 °C, the measurement temperature. The spectral features revealed that D1-H215, a ligand to the non-heme iron interacting with QB, was deprotonated to an imidazolate anion at higher pH with a pKa of ∼5.6 in the Fe3+ state, while carboxylate groups from Glu/Asp residues present on the stromal side of PSII were protonated at lower pH with a pKa of ∼5.7 in the Fe2+ state. It is thus concluded that the deprotonation/protonation reactions of D1-H215 and Glu/Asp residues located near the non-heme iron cause the pH-dependent changes in Em(Fe2+/Fe3+) at higher and lower pH regions, respectively, realizing a linear pH dependence over a wide pH range.


Assuntos
Ferro/análise , Complexo de Proteína do Fotossistema II/química , Spinacia oleracea/química , Concentração de Íons de Hidrogênio , Modelos Moleculares , Oxirredução , Espectroscopia de Infravermelho com Transformada de Fourier
3.
Biochemistry ; 59(45): 4336-4343, 2020 11 17.
Artigo em Inglês | MEDLINE | ID: mdl-33147961

RESUMO

The iron-quinone complex in photosystem II (PSII) consists of the two plastoquinone electron acceptors, QA and QB, and a non-heme iron connecting them. It has been suggested that nearby histidine residues play important roles in the electron and proton transfer reactions of the iron-quinone complex in PSII. In this study, we investigated the protonation/deprotonation reaction of D1-H215, which bridges the non-heme iron and QB, using attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy. Flash-induced Fe2+/Fe3+ ATR-FTIR difference spectra were measured with PSII membranes in the pH range of 5.0-7.5. In the CN stretching region of histidine, the intensity of a negative peak at 1094 cm-1, which was assigned to the deprotonated anion form of D1-H215, increased as the pH increased. Singular-value decomposition analysis provided a component due to deprotonation of D1-H215 with a pKa of ∼5.5 in the Fe3+ state, whereas no component of histidine deprotonation was resolved in the Fe2+ state. This observation supports the previous proposal that D1-H215 is responsible for the proton release upon Fe2+ oxidation [Berthomieu, C., and Hienerwadel, R. (2001) Biochemistry 40, 4044-4052]. The pH dependence of the 13C isotope-edited bands of the bicarbonate ligand to the non-heme iron further showed that deprotonation of bicarbonate to carbonate does not take place at pH <8 in the Fe2+ or Fe3+ state. These results suggest that the putative mechanism of proton transfer to QBH- through D1-H215 and bicarbonate around Fe2+ functions throughout the physiological pH range.


Assuntos
Histidina/química , Histidina/metabolismo , Ferro/química , Compostos Organometálicos/metabolismo , Complexo de Proteína do Fotossistema II/metabolismo , Prótons , Quinonas/química , Ligantes , Luz , Modelos Moleculares , Compostos Organometálicos/química , Complexo de Proteína do Fotossistema II/química , Ligação Proteica , Conformação Proteica , Espectroscopia de Infravermelho com Transformada de Fourier
4.
Biochem Biophys Res Commun ; 492(2): 218-223, 2017 10 14.
Artigo em Inglês | MEDLINE | ID: mdl-28823918

RESUMO

Exposure to nanoparticles such as carbon nanotubes has been shown to cause pleural mesothelioma similar to that caused by asbestos, and has become an environmental health issue. Not only is the percutaneous absorption of nano-size titanium dioxide particles frequently considered problematic, but the possibility of absorption into the body through the pulmonary route is also a concern. Nevertheless, there are few reports of nano-size titanium dioxide particles on respiratory organ exposure and dynamics or on the mechanism of toxicity. In this study, we focused on the morphology as well as the size of titanium dioxide particles. In comparing the effects between nano-size anatase and rutile titanium dioxide on human-derived pleural mesothelial cells, the anatase form was shown to be actively absorbed into cells, producing reactive oxygen species and causing oxidative damage to DNA. In contrast, we showed for the first time that the rutile form is not easily absorbed by cells and, therefore, does not cause oxidative DNA damage and is significantly less damaging to cells. These results suggest that with respect to the toxicity of titanium dioxide particles on human-derived mesothelial cells, the crystal form rather than the particle size has a greater effect on cellular absorption. Also, it was indicated that the difference in absorption is the primary cause of the difference in the toxicity against mesothelial cells.


Assuntos
Dano ao DNA/efeitos dos fármacos , Células Epiteliais/efeitos dos fármacos , Nanoestruturas/toxicidade , Estresse Oxidativo/efeitos dos fármacos , Titânio/toxicidade , Linhagem Celular , Cristalização , Células Epiteliais/citologia , Células Epiteliais/metabolismo , Células Epiteliais/patologia , Humanos , Tamanho da Partícula , Pleura/citologia , Pleura/efeitos dos fármacos , Pleura/metabolismo , Pleura/patologia , Espécies Reativas de Oxigênio/metabolismo
5.
Sci Rep ; 6: 19878, 2016 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-26804137

RESUMO

Homodimeric photosynthetic reaction centers (RCs) in green sulfur bacteria and heliobacteria are functional homologs of Photosystem (PS) I in oxygenic phototrophs. They show unique features in their electron transfer reactions; however, detailed structural information has not been available so far. We mutated PscA-Leu688 and PscA-Val689 to cysteine residues in the green sulfur bacterium Chlorobaculum tepidum; these residues were predicted to interact with the special pair P840, based on sequence comparison with PS I. Spectroelectrochemical measurements showed that the L688C and V689C mutations altered a near-infrared difference spectrum upon P840 oxidation, as well as the redox potential of P840. Light-induced Fourier transform infrared difference measurements showed that the L688C mutation induced a differential signal of the S-H stretching vibration in the P840(+)/P840 spectrum, as reported in P800(+)/P800 difference spectrum in a heliobacterial RC. Spectral changes in the 13(1)-keto C=O region, caused by both mutations, revealed corresponding changes in the electronic structure of P840 and in the hydrogen-bonding interaction at the 13(1)-keto C=O group. These results suggest that there is a common spatial configuration around the special pair sites among type 1 RCs. The data also provided evidence that P840 has a symmetric electronic structure, as expected from a homodimeric RC.


Assuntos
Proteínas de Bactérias/química , Chlorobi/genética , Complexo de Proteína do Fotossistema I/genética , Conformação Proteica/efeitos dos fármacos , Proteínas de Bactérias/genética , Chlorobi/química , Ligação de Hidrogênio/efeitos dos fármacos , Mutação , Compostos Organometálicos/química , Compostos Organometálicos/farmacologia , Oxirredução , Complexo de Proteína do Fotossistema I/química
6.
Angew Chem Int Ed Engl ; 54(37): 10763-7, 2015 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-26333053

RESUMO

The reaction mechanism of nitrile hydratase (NHase) was investigated using time-resolved crystallography of the mutant NHase, in which ßArg56, strictly conserved and hydrogen bonded to the two post-translationally oxidized cysteine ligands, was replaced by lysine, and pivalonitrile was the substrate. The crystal structures of the reaction intermediates were determined at high resolution (1.2-1.3 Å). In combination with FTIR analyses of NHase following hydration in H2 (18) O, we propose that the metal-coordinated substrate is nucleophilically attacked by the O(SO(-) ) atom of αCys114-SO(-) , followed by nucleophilic attack of the S(SO(-) ) atom by a ßArg56-activated water molecule to release the product amide and regenerate αCys114-SO(-) .


Assuntos
Cristalografia por Raios X/métodos , Cisteína/análogos & derivados , Hidroliases/química , Ácidos Sulfênicos/química , Catálise , Cisteína/química , Ligantes , Modelos Moleculares , Conformação Proteica
7.
Biochemistry ; 54(11): 2022-31, 2015 Mar 24.
Artigo em Inglês | MEDLINE | ID: mdl-25744893

RESUMO

Extrinsic proteins of photosystem II (PSII) play an important role in optimizing oxygen-evolving reactions in all oxyphototrophs. The currently available crystal structures of cyanobacterial PSII core complexes show the binding structures of the extrinsic proteins, PsbO, PsbV, and PsbU; however, how the individual extrinsic proteins affect the structure and the function of the oxygen-evolving center (OEC) in cyanobacterial PSII remains unknown. In this study, we have investigated the effects of the binding of the extrinsic proteins on the protein conformation of the OEC in PSII core complexes from the thermophilic cyanobacterium Thermosynechococcus elongatus, using light-induced Fourier transform infrared (FTIR) difference spectroscopy. Upon removal of the three extrinsic proteins, an S2-minus-S1 FTIR difference spectrum measured in the presence of a high CaCl2 concentration showed a drastic change in amide I bands, reflecting perturbation of the secondary structures of polypeptides, whereas the overall spectral intensity was lost at a low CaCl2 concentration, indicative of inactivation of the Mn4CaO5 cluster. The amide I features as well as the overall intensity were recovered mainly by binding of PsbO, while complete amide I recovery was achieved by further binding of PsbV and PsbU. We thus concluded that PsbO, together with smaller contributions of PsbV and PsbU, plays a role in the maintenance of the proper protein conformation of the OEC in cyanobacterial PSII, which provides the stability of the Mn4CaO5 cluster via the enhanced retention capability of Ca²âº and Cl⁻ ions.


Assuntos
Proteínas de Bactérias/química , Cianobactérias/enzimologia , Modelos Moleculares , Complexo de Proteína do Fotossistema II/química , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Cloreto de Cálcio/química , Estabilidade Enzimática , Concentração Osmolar , Complexo de Proteína do Fotossistema II/isolamento & purificação , Complexo de Proteína do Fotossistema II/metabolismo , Conformação Proteica , Multimerização Proteica , Estrutura Secundária de Proteína , Espectroscopia de Infravermelho com Transformada de Fourier
8.
Biochemistry ; 53(30): 4914-23, 2014 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-25029208

RESUMO

It is known that inactivation of the Mn4CaO5 cluster, the catalytic center of water oxidation in photosystem II (PSII), induces a positive shift of the redox potential (Em) of the primary quinone electron acceptor QA by ∼+150 mV, resulting in suppression of the electron transfer from QA to the secondary quinone acceptor QB. Although the relevance of this Em(QA(-)/QA) shift to the photoprotection of PSII has been debated, its molecular mechanism is still enigmatic from a structural viewpoint because QA is ∼40 Å from the Mn4CaO5 cluster. In this work, we have investigated the influence of Mn depletion on the Em of the non-heme iron, which is located between QA and QB, and its surrounding structure. Electrochemical measurements in combination with Fourier transform infrared (FTIR) spectroscopy revealed that Mn depletion shifts Em(Fe(2+)/Fe(3+)) by +18 mV, which is ∼8 times smaller than the shift of Em(QA(-)/QA). Comparison of the Fe(2+)/Fe(3+) FTIR difference spectra between intact and Mn-depleted PSII samples showed that Mn depletion altered the pKa's of a His ligand to the non-heme iron, most probably the D1-His215 interacting QB, and a carboxylate group, possibly D1-Glu244, coupled with the non-heme iron. It was further shown that Mn depletion influences the C≡N vibration of bromoxynil bound to the QB site, indicative of the modification of the QB binding site. On the basis of these results, we discuss the mechanism of a long-range interaction between the donor and acceptor sides of PSII.


Assuntos
Compostos de Cálcio/metabolismo , Técnicas Eletroquímicas/métodos , Compostos de Manganês/metabolismo , Óxidos/metabolismo , Complexo de Proteína do Fotossistema II/metabolismo , Sítios de Ligação/fisiologia , Compostos de Cálcio/química , Cristalografia por Raios X , Compostos de Manganês/química , Óxidos/química , Complexo de Proteína do Fotossistema II/química , Espectroscopia de Infravermelho com Transformada de Fourier/métodos
9.
Biochemistry ; 48(38): 8994-9001, 2009 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-19697909

RESUMO

The non-heme iron is located between the quinone electron acceptors, QA and QB, in photosystem II (PSII), and together with its bicarbonate ligand, it regulates the electron and proton transfer reactions of quinone acceptors. In this study, we have investigated the structural coupling of a nearby Tyr residue with the non-heme iron center using Fourier transform infrared (FTIR) spectroscopy. Light-induced Fe2+/Fe3+ FTIR difference spectra of PSII core complexes from unlabeled and [4-13C]Tyr-labeled Thermosynechococcus elongatus revealed that the CO stretching (nuCO) bands of a Tyr side chain are located at 1253 and 1241 cm(-1) in the Fe2+ and Fe3+ states, respectively. Upon deuteration, both nuCO bands were upshifted by 11-12 cm(-1). Taking into account the criteria for determining the hydrogen bond structure of a Tyr side chain from infrared bands reported previously [Takahashi, R., and Noguchi, T. (2007) J. Phys. Chem. B 111, 13833-13844] and the results of DFT calculations of model complexes of p-cresol hydrogen-bonded with bicarbonate, we interpreted the observed nuCO bands and their deuteration effects as indicating that one Tyr side chain with a hydrogen bond donor-acceptor form is strongly coupled to the non-heme iron. From the X-ray structures of PSII core complexes, it is proposed that either D1-Y246 or D2-Y244 provides a hydrogen bond to the oxygen of the bicarbonate ligand but the other Tyr does not directly interact with bicarbonate. The Tyr residue coupled to the non-heme iron may play a key role in the regulatory function of the iron-bicarbonate center by stabilizing the bicarbonate ligand and forming a rigid hydrogen bond network around the non-heme ion.


Assuntos
Proteínas de Bactérias/química , Complexo de Proteína do Fotossistema II/química , Bicarbonatos/química , Isótopos de Carbono , Cristalografia por Raios X , Cianobactérias/química , Ligação de Hidrogênio , Ferro/química , Modelos Moleculares , Estrutura Molecular , Processos Fotoquímicos , Espectroscopia de Infravermelho com Transformada de Fourier , Tirosina/química
10.
J Biol Chem ; 283(52): 36617-23, 2008 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-18948265

RESUMO

Nitrile hydratases (NHases) have an unusual iron or cobalt catalytic center with two oxidized cysteine ligands, cysteine-sulfinic acid and cysteine-sulfenic acid, catalyzing the hydration of nitriles to amides. Recently, we found that the NHase of Rhodococcus erythropolis N771 exhibited an additional catalytic activity, converting tert-butylisonitrile (tBuNC) to tert-butylamine. Taking advantage of the slow reactivity of tBuNC and the photoreactivity of nitrosylated NHase, we present the first structural evidence for the catalytic mechanism of NHase with time-resolved x-ray crystallography. By monitoring the reaction with attenuated total reflectance-Fourier transform infrared spectroscopy, the product from the isonitrile carbon was identified as a CO molecule. Crystals of nitrosylated inactive NHase were soaked with tBuNC. The catalytic reaction was initiated by photo-induced denitrosylation and stopped by flash cooling. tBuNC was first trapped at the hydrophobic pocket above the iron center and then coordinated to the iron ion at 120 min. At 440 min, the electron density of tBuNC was significantly altered, and a new electron density was observed near the isonitrile carbon as well as the sulfenate oxygen of alphaCys114. These results demonstrate that the substrate was coordinated to the iron and then attacked by a solvent molecule activated by alphaCys114-SOH.


Assuntos
Cristalografia por Raios X/métodos , Hidroliases/química , Nitrilas/química , Rhodococcus/metabolismo , Carbono/química , Monóxido de Carbono/química , Catálise , Elétrons , Desenho de Equipamento , Ferro/química , Cinética , Conformação Molecular , Nitrogênio/química , Solventes/química , Espectroscopia de Infravermelho com Transformada de Fourier
11.
J Am Chem Soc ; 130(39): 12884-5, 2008 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-18774803

RESUMO

BLUF and LOV are blue-light sensor domains that possess flavin as a common chromophore but exhibit distinct photoreactions. Ile66 located in the BLUF domain of a cyanobacterial photosensor protein, TePixD, was replaced with Cys to mimic the LOV domain. Light-induced Fourier transform infrared spectra of the I66C TePixD showed that a flavin-Cys adduct, typical of the photoinduced intermediates of LOV domains, was formed in the I66C BLUF domain. This result demonstrates that different types of flavin photoreactions can be realized in the same domain if key amino acids are properly arranged near the flavin and the domain structure itself is not a crucial factor to determine the photoreaction type.


Assuntos
Proteínas de Bactérias/química , Cisteína/química , Flavinas/química , Fotorreceptores Microbianos/química , Proteínas de Bactérias/metabolismo , Cristalografia por Raios X , Cianobactérias/química , Cianobactérias/metabolismo , Cisteína/metabolismo , Flavinas/metabolismo , Fotoquímica , Fotorreceptores Microbianos/metabolismo , Estrutura Terciária de Proteína , Espectrofotometria Ultravioleta , Espectroscopia de Infravermelho com Transformada de Fourier
12.
J Biol Chem ; 283(26): 18198-209, 2008 Jun 27.
Artigo em Inglês | MEDLINE | ID: mdl-18458090

RESUMO

Photochemically active photosystem (PS) I complexes were purified from the chlorophyll (Chl) d-dominated cyanobacterium Acaryochloris marina MBIC 11017, and several of their properties were characterized. PS I complexes consist of 11 subunits, including PsaK1 and PsaK2; a new small subunit was identified and named Psa27. The new subunit might replace the function of PsaI that is absent in A. marina. The amounts of pigments per one molecule of Chl d' were 97.0 +/- 11.0 Chl d, 1.9 +/- 0.5 Chl a, 25.2 +/- 2.4 alpha-carotene, and two phylloquinone molecules. The light-induced Fourier transform infrared difference spectroscopy and light-induced difference absorption spectra reconfirmed that the primary electron donor of PS I (P740) was the Chl d dimer. In addition to P740, the difference spectrum contained an additional band at 728 nm. The redox potentials of P740 were estimated to be 439 mV by spectroelectrochemistry; this value was comparable with the potential of P700 in other cyanobacteria and higher plants. This suggests that the overall energetics of the PS I reaction were adjusted to the electron acceptor side to utilize the lower light energy gained by P740. The distribution of charge in P740 was estimated by a density functional theory calculation, and a partial localization of charge was predicted to P1 Chl (special pair Chl on PsaA). Based on differences in the protein matrix and optical properties of P740, construction of the PS I core in A. marina was discussed.


Assuntos
Clorofila/metabolismo , Cianobactérias/metabolismo , Complexo de Proteína do Fotossistema I/metabolismo , Sequência de Aminoácidos , Dimerização , Elétrons , Luz , Modelos Biológicos , Modelos Moleculares , Dados de Sequência Molecular , Oxirredução , Fotossíntese , Estrutura Terciária de Proteína , Espectrofotometria/métodos , Espectroscopia de Infravermelho com Transformada de Fourier
13.
Proc Natl Acad Sci U S A ; 104(17): 7283-8, 2007 Apr 24.
Artigo em Inglês | MEDLINE | ID: mdl-17431035

RESUMO

The composition of photosystem II (PSII) in the chlorophyll (Chl) d-dominated cyanobacterium Acaryochloris marina MBIC 11017 was investigated to enhance the general understanding of the energetics of the PSII reaction center. We first purified photochemically active complexes consisting of a 47-kDa Chl protein (CP47), CP43' (PcbC), D1, D2, cytochrome b(559), PsbI, and a small polypeptide. The pigment composition per two pheophytin (Phe) a molecules was 55 +/- 7 Chl d, 3.0 +/- 0.4 Chl a, 17 +/- 3 alpha-carotene, and 1.4 +/- 0.2 plastoquinone-9. The special pair was detected by a reversible absorption change at 713 nm (P713) together with a cation radical band at 842 nm. FTIR difference spectra of the specific bands of a 3-formyl group allowed assignment of the special pair. The combined results indicate that the special pair comprises a Chl d homodimer. The primary electron acceptor was shown by photoaccumulation to be Phe a, and its potential was shifted to a higher value than that in the Chl a/Phe a system. The overall energetics of PSII in the Chl d system are adjusted to changes in the redox potentials, with P713 as the special pair using a lower light energy at 713 nm. Taking into account the reported downward shift in the potential of the special pair of photosystem I (P740) in A. marina, our findings lend support to the idea that changes in photosynthetic pigments combine with a modification of the redox potentials of electron transfer components to give rise to an energetic adjustment of the total reaction system.


Assuntos
Clorofila/metabolismo , Cianobactérias/metabolismo , Complexo de Proteína do Fotossistema II/metabolismo , Coenzimas , Elétrons , Eletroforese em Gel de Poliacrilamida , Oxirredução , Fotoquímica , Complexo de Proteína do Fotossistema II/isolamento & purificação , Pigmentos Biológicos/química , Subunidades Proteicas/isolamento & purificação , Subunidades Proteicas/metabolismo , Espectrometria de Fluorescência
14.
Photosynth Res ; 91(1): 59-69, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17279438

RESUMO

The molecular mechanism of photosynthetic oxygen evolution remains a mystery in photosynthesis research. Although recent X-ray crystallographic studies of the photosystem II core complex at 3.0-3.5 A resolutions have revealed the structure of the oxygen-evolving center (OEC), with approximate positions of the Mn and Ca ions and the amino acid ligands, elucidation of its detailed structure and the reactions during the S-state cycle awaits further spectroscopic investigations. Light-induced Fourier transform infrared (FTIR) difference spectroscopy was first applied to the OEC in 1992 as detection of its structural changes upon the S(1)-->S(2) transition, and spectra during the S-state cycle induced by consecutive flashes were reported in 2001. These FTIR spectra provide extensive structural information on the amino acid side groups, polypeptide chains, metal core, and water molecules, which constitute the OEC and are involved in its reaction. FTIR spectroscopy is thus becoming a powerful tool in investigating the reaction mechanism of photosynthetic oxygen evolution. In this mini-review, the measurement method of light-induced FTIR spectra of OEC is introduced and the results obtained thus far using this technique are summarized.


Assuntos
Luz , Oxigênio/química , Fotossíntese , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Histidina/química , Ligantes , Magnésio/química , Oxigênio/metabolismo , Complexo de Proteína do Fotossistema II/química , Espectroscopia de Infravermelho com Transformada de Fourier/instrumentação , Água/química
15.
J Biochem ; 136(1): 115-21, 2004 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-15269247

RESUMO

Nitrile hydratase (NHase) from Rhodococcus N-771 is a novel enzyme that is inactive in the dark due to an enodogenous nitric oxide (NO) molecule bound to the non-heme iron center, and is activated by its photodissociation. FTIR spectra in the NO stretching region of the dark-inactive NHase were recorded in the temperature range of 270-80 K. Two NO peaks were observed at 1854 and 1846 cm-1 at 270 K, and both frequencies upshifted as the temperature was lowered, retaining the peak separation of 8-9 cm-1. The relative intensity of the lower-frequency peak increased with decreasing temperature up to ~120 K, whereas it was mostly unchanged below this temperature. This observation indicates that two distinct conformations with slightly different NO structures are thermally equilibrated in the dark-inactive NHase above ~120 K, and the interconversion is frozen-in at lower temperatures. The intensity ratio of the NO bands changed gradually upon increasing the pH from 5.5 to 11.0, but no specific pKa value was found. This result, together with the comparison of the light-induced FTIR difference spectra measured at pH 6.5 and 9.0, suggests that the protonation/deprotonation of a specific amino acid group in the active site of NHase is not a direct cause of the occurrence of the two conformations, although several protonatable groups in the protein may influence the energetics of the two conformers. From the previous observation that the isolated alpha subunit of NHase exhibited a single broad NO peak, it is suggested that interaction of the beta subunit forming the reactive cavity is essential for the double-minimum potential of the active-site structure. The frequencies and widths of the two NO bands changed upon addition of propionamide, 1,4-dioxane, and cyclohexyl isocyanide, indicating that these compounds are bound to the active pocket and change the interactions of the iron center or the dielectric environments around the NO molecule. Thus, the NO bands of NHase can also be a useful probe to monitor the binding of substrates and their analogues to the active pocket.


Assuntos
Hidroliases/química , Ferro/metabolismo , Óxido Nítrico/metabolismo , Temperatura Alta , Hidroliases/metabolismo , Concentração de Íons de Hidrogênio , Conformação Proteica , Rhodococcus/enzimologia , Espectroscopia de Infravermelho com Transformada de Fourier
16.
Biochemistry ; 42(40): 11642-50, 2003 Oct 14.
Artigo em Inglês | MEDLINE | ID: mdl-14529274

RESUMO

Nitrile hydratase (NHase) from Rhodococcus N-771, which catalyzes hydration of nitriles to the corresponding amides, exhibits novel photosensitivity; in the dark, it is in the inactive form that binds an endogenous nitric oxide (NO) molecule at the non-heme iron center, and photodissociation of the NO activates the enzyme. NHase is also known to have a unique active site structure. Two cysteine ligands to the iron center, alphaCys112 and alphaCys114, are post-translationally modified to sulfinic acid (Cys-SO(2)H) and sulfenic acid (Cys-SOH), respectively, which are thought to play a crucial role in the catalytic reaction. Here, we have determined the protonation structures of these Cys-SO(2)H and Cys-SOH groups using Fourier transform infrared (FTIR) spectroscopy in combination with density functional theory (DFT) calculations. The light-induced FTIR difference spectrum of NHase between the dark inactive and light active forms exhibited two prominent signals at (1154-1148)/1126 and (1040-1034)/1019 cm(-1), which downshifted to 1141/1114 and 1026/1012 cm(-1), respectively, in the uniformly (34)S-labeled NHase. In addition, a minor signal at 915/908 cm(-1) also showed a considerable downshift upon (34)S labeling. These (34)S-sensitive signals were basically conserved in D(2)O buffer with only slight shifts. Vibrational frequencies of methanesulfenic acid (CH(3)SOH) and methanesulfinic acid (CH(3)SO(2)H), simple model compounds of Cys-SOH and Cys-SO(2)H, respectively, were calculated using the DFT method in both the protonated and deprotonated forms and in metal complexes. Comparison of the calculated frequencies and isotope shifts with the observed ones provided the assignment of the two major signals around 1140 and 1030 cm(-1) to the asymmetric and symmetric SO(2) stretching vibrations, respectively, of the S-bonded Cys-SO(2)(-) complex, and the assignment of the minor signal around 910 cm(-1) most likely to the SO stretch of the S-bonded Cys-SO(-) complex. These assignments and the small frequency shifts upon deuteration are consistent with the view that the deprotonated alphaCys112-SO(2)(-) and alphaCys114-SO(-) are hydrogen-bonded with the protons from betaArg56 and/or betaArg141, forming a reactive cavity at the interface of the alpha and beta subunits. There is further speculation that either of these groups is hydrogen bonded to a reactant water molecule, increasing its basicity to facilitate the nucleophilic attack on the nitrile substrate bound to the iron center.


Assuntos
Hidroliases/química , Luz , Prótons , Ácidos Sulfênicos/química , Ácidos Sulfínicos/química , Cisteína/química , Hidroliases/metabolismo , Rhodococcus/enzimologia , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Isótopos de Enxofre/metabolismo , Vibração
17.
Biochemistry ; 42(20): 6035-42, 2003 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-12755605

RESUMO

Protein bands in flash-induced Fourier transform infrared (FTIR) difference spectra of the S-state cycle of photosynthetic water oxidation were analyzed by uniform (15)N and (13)C isotopic labeling of photosystem II (PS II). The difference spectra upon first- to fourth-flash illumination were obtained with hydrated (for the 1800-1200 cm(-)(1) region) or deuterated (for the 3500-3100 cm(-)(1) region) films of unlabeled, (15)N-labeled, and (13)C-labeled PS II core complexes from Thermosynechococcus elongatus. Shifts of band frequencies upon (15)N and (13)C labeling provided the assignments of major peaks in the regions of 3450-3250 and 1700-1630 cm(-)(1) to the NH stretches and amide I modes of polypeptide backbones, respectively, and the assignments of some of the peaks in the 1600-1500 cm(-)(1) region to the amide II modes of backbones. Other prominent peaks in the latter region and most of the peaks in the 1450-1300 cm(-)(1) region exhibited large downshifts upon (13)C labeling but were unchanged by (15)N labeling, and hence assigned to the asymmetric and symmetric COO(-) stretching vibrations, respectively, of carboxylate groups in Glu, Asp, or the C-terminus. Peak positions corresponded well with each other among the first- to fourth-flash spectra, and most of the bands in the first- and/or second-flash spectra appeared with opposite signs of intensity in the third- and/or fourth-flash spectra. This observation indicates that the protein movements in the S(1)-->S(2) and/or S(2)-->S(3) transitions are mostly reversed in the S(3)-->S(0) and/or S(0)-->S(1) transitions, representing a catalytic role of the protein moieties of the water-oxidizing complex. Drastic structural changes in carboxylate groups over the S-state cycle suggest that the Asp and/or Glu side chains play important roles in the reaction mechanism of photosynthetic water oxidation.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/química , Sítios de Ligação , Isótopos de Carbono , Cianobactérias/genética , Cianobactérias/metabolismo , Estrutura Molecular , Isótopos de Nitrogênio , Oxirredução , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier , Água/metabolismo
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