Polymorph transformation in a mixed-stacking nickel-dithiolene complex with the derivative of 4,4'-bipyridinium.

In this study, two polymorphs of the [1,1'-dibutyl-4,4'-bipyridinium][Ni(mnt)2] salt (1) were synthesized. The dark-green polymorph (designated as 1-g) was prepared under ambient conditions by the rapid precipitation method in aqueous solutions. Subsequently, the red polymorph (labeled as 1-r) was obtained by subjecting 1-g to ultrasonication in MeOH at room temperature. Microanalysis, infrared spectroscopy, thermogravimetry (TG), differential scanning calorimetry (DSC), and powder X-ray diffraction (PXRD) techniques were used to characterize the two polymorphs. Both 1-g and 1-r exhibit structural phase transitions: a reversible phase transition at ∼403 K (∼268 K) upon heating and 384 K (∼252 K) upon cooling for 1-g (1-r) within the temperature range below 473 K. Interestingly, on heating 1-r to 523 K, an irreversible phase transition occurred at about 494 K, resulting in the conversion of 1-r into 1-g. Relative to 1-r, 1-g represents a thermodynamically metastable phase wherein numerous high-energy conformations in butyl chains of cations are confined within the lattice owing to quick precipitation or rapid annealing from higher temperatures. Through variable-temperature single crystal and powder X-ray diffractions, UV-visible spectroscopy, dielectric spectroscopy, and DSC analyses, this study delves into the mechanism underlying phase transitions for each polymorph and the manual transformation between 1-g and 1-r as well.

Cryo-EM structures reveal two allosteric inhibition modes of PI3KαH1047R involving a re-shaping of the activation loop.

PI3Kα is a lipid kinase that phosphorylates PIP2 and generates PIP3. The hyperactive PI3Kα mutation, H1047R, accounts for about 14% of breast cancer, making it a highly attractive target for drug discovery. Here, we report the cryo-EM structures of PI3KαH1047R bound to two different allosteric inhibitors QR-7909 and QR-8557 at a global resolution of 2.7 Å and 3.0 Å, respectively. The structures reveal two distinct binding pockets on the opposite sides of the activation loop. Structural and MD simulation analyses show that the allosteric binding of QR-7909 and QR-8557 inhibit PI3KαH1047R hyper-activity by reducing the fluctuation and mobility of the activation loop. Our work provides a strong rational basis for a further optimization and development of highly selective drug candidates to treat PI3KαH1047R-driven cancers.

Accelerated Discovery of Macrocyclic CDK2 Inhibitor QR-6401 by Generative Models and Structure-Based Drug Design.

Selective CDK2 inhibitors have the potential to provide effective therapeutics for CDK2-dependent cancers and for combating drug resistance due to high cyclin E1 (CCNE1) expression intrinsically or CCNE1 amplification induced by treatment of CDK4/6 inhibitors. Generative models that take advantage of deep learning are being increasingly integrated into early drug discovery for hit identification and lead optimization. Here we report the discovery of a highly potent and selective macrocyclic CDK2 inhibitor QR-6401 (23) accelerated by the application of generative models and structure-based drug design (SBDD). QR-6401 (23) demonstrated robust antitumor efficacy in an OVCAR3 ovarian cancer xenograft model via oral administration.

Two-step thermotropic phase transition and dielectric relaxation in 1D supramolecular lead iodide perovskite [NH4@18-crown ether]PbI3.

The supramolecular lead iodide perovskite crystals, {[NH4(18-crown-6)]PbI3}∞ (1), (18-crown-6 = 1,4,7,10,13,16-hexaoxacyclooctadecane), was successfully achieved by a facile solvent evaporation strategy using a DMF solution containing equal molar quantities of PbI2, NH4I and 18-crown-6. The supramolecular perovskite was characterized by microanalysis for C, H and N elements, thermogravimetric (TG) analysis, differential scanning calorimetry (DSC), powder X-ray diffraction (PXRD) and single crystal X-ray diffraction techniques. DSC measurements demonstrated that 1 experiences a two-step thermotropic phase transition around 333 K and 383 K, respectively. The phase transition is relevant to the disorder-order transformation of the 18-crown-6 molecule at ∼333 K, while both breaking-symmetry and ordered-disordered transformation of the 18-crown-6 molecule occurred at ∼383 K. In addition, the sharp change of the PbI6 coordination octahedron distortion degree plays a synergistic role in the two-step phase transition. The dielectric relaxation occurs above 243 K in 1 and is mainly attributed to the displacement of the NH4+ ions relative to the ring of the 18-crown-6 molecule and {PbI3}∞ chain induced by an AC electrical field.

Polycyclic aromatic hydrocarbons (PAHs) in the upstream rivers of Taihu Lake Basin, China: spatial distribution, sources and environmental risk.

The polycyclic aromatic hydrocarbon (PAH) pollution in Taihu Lake Basin has caused widespread concern. However, the spatial temporal distribution of PAHs in the upstream rivers of Taihu Lake Basin remains largely unknown. Thus, this study aims to investigate the level, spatial distribution, sources, and environment risk caused by PAHs in upstream rivers of Taihu Lake Basin. The concentrations of total 16 PAHs (∑16PAHs) ranged from 188.64 to 1060.39 ng/g, with an average of 472.62 ng/g. High-molecular-weight (HMW) PAHs were the predominant compounds in most sample sites. The results of source analysis demonstrated that the PAH pollution was mainly sourced from mixture of combustion and direct petroleum spillage. The ecological risk assessment showed that moderate ecological risk caused by the PAH contaminants might occur in most sample sites. The incremental lifetime cancer risks (ILCRs) ranged from 2.07 ×10-4 - 2.66 × 10-3 for children and 9.66 ×10-5 - 1.24 × 10-3 for adult, indicating moderate cancer risk of PAH-contaminated sediments.

Evolving A RIG-I Antagonist: A Modified DNA Aptamer Mimics Viral RNA.

Vertebrate organisms express a diversity of protein receptors that recognize and respond to the presence of pathogenic molecules, functioning as an early warning system for infection. As a result of mutation or dysregulated metabolism, these same innate immune receptors can be inappropriately activated, leading to inflammation and disease. One of the most important receptors for detection and response to RNA viruses is called RIG-I, and dysregulation of this protein is linked with a variety of disease states. Despite its central role in inflammatory responses, antagonists for RIG-I are underdeveloped. In this study, we use invitro selection from a pool of modified DNA aptamers to create a high affinity RIG-I antagonist. A high resolution crystal structure of the complex reveals molecular mimicry between the aptamer and the 5'-triphosphate terminus of viral ligands, which bind to the same amino acids within the CTD recognition platform of the RIG-I receptor. Our study suggests a powerful, generalizable strategy for generating immunomodulatory drugs and mechanistic tool compounds.

Encapsulation of cuprous/cobalt sites in metal organic framework for enhanced C2H4/C2H6 separation.

Adsorbents based on CuI for π-complexative separation of C2H4/C2H6 have attracted widespread interests. However, they are still confronting some challenges, for example, (i) a low separation efficiency, resulted from the ineffective reduction of CuII to CuI along with aggregation, and (ii) poor stability due to the oxidation of CuI to inactive CuII. In this study, active Cu and auxiliary Co species are simultaneously encapsulated within the nanopores of MIL-101 using a double-solvent (DS) method to obtain CuCoM-DS. The Cu species at the interior of MIL-101 are homogeneously dispersed and can be completely reduced to CuI without any structural damage to MIL-101. The resulting CuCoM-DS exhibits a superior performance in C2H4/C2H6 separation not only to the pristine MIL-101, but to the counterpart samples of single Cu and/or Cu/Co at the exterior of MIL-101. The best sample of 1.5CuCoM-DS adsorbent is capable to adsorb 50.5 mL·g-1 of C2H4, and the C2H4/C2H6 selectivity is 2.6 at 100 kPa. Both C2H4 uptake and C2H4/C2H6 selectivity are higher than those reference samples. Moreover, 1.5CuCoM-DS preserves over 90% of fresh C2H4 uptake after the exposure to atmospheric air for 12 days. This study provides new design ideas for confining bimetallic sites in MOFs for broad applications.

LCZ696, an Angiotensin Receptor-Neprilysin Inhibitor, Improves Cardiac Hypertrophy and Fibrosis and Cardiac Lymphatic Remodeling in Transverse Aortic Constriction Model Mice.

Cardiac hypertrophy and ventricular remodeling following heart failure are important causes of high mortality in heart disease patients. The cardiac lymphatic system has been associated with limited research, but it plays an important role in the improvement of myocardial edema and the promotion of fluid balance. LCZ696 is a novel combination of angiotensin and neprilysin inhibitors. Here, we studied the role played by LCZ696 during transverse aortic constriction (TAC) induced cardiac hypertrophy and changes in the lymphatic system. Mice undergoing aortic coarctation were constructed to represent a cardiac hypertrophy model and then divided into random groups that either received treatment with LCZ696 (60 mg/kg/d) or no treatment. Cardiac ultrasonography was used to detect cardiac function, and hematoxylin and eosin (H&E) and Masson staining were used to detect myocardial hypertrophy and fibrosis. The proinflammatory factors interleukin-6 (IL-6), IL-1ß, and tumor necrosis factor-α (TNF-α) were detected in the blood and heart tissues of mice. The protein expression levels of lymphatic-specific markers, such as vascular endothelial growth factor C (VEGF-C), VEGF receptor 3 (VEGFR3), and lymphatic vessel endothelial hyaluronan receptor 1 (LYVE-1) were detected in mouse heart tissues. We also examined the colocalization of lymphatic vessels and macrophages by immunofluorescence. The results showed that LCZ696 significantly improved heart dysfunction, cardiac hypertrophy, and fibrosis and inhibited the expression of proinflammatory factors IL-6, IL-1ß, and TNF-α in the circulating blood and heart tissues of mice. LCZ696 also decreased the protein expression levels of VEGF-C, VEGFR3, and LYVE-1 in mouse heart tissues, ameliorated the transport load of lymphatic vessels to macrophages, and improved the remodeling of the lymphatic system in the hypertrophic cardiomyopathy model induced by TAC.

RIG-I Recognition of RNA Targets: The Influence of Terminal Base Pair Sequence and Overhangs on Affinity and Signaling.

Within the complex environment of the human cell, the RIG-I innate immune receptor must detect the presence of double-stranded viral RNA molecules and differentiate them from a diversity of host RNA molecules. In an ongoing effort to understand the molecular basis for RIG-I target specificity, here, we evaluate the ability of this sensor to respond to triphosphorylated, double-stranded RNA molecules that contain all possible terminal base pairs and common mismatches. In addition, we test the response to duplexes with various types of 5' and 3' overhangs. We conducted quantitative measurements of RNA ligand affinity, then tested RNA variants for their ability to stimulate the RIG-I-dependent interferon response in cells and in whole animals. The resulting data provide insights into the design of RNA therapeutics that prevent RIG-I activation, and they provide valuable insights into the mechanisms of evasion by deadly pathogens such as the Ebola and Marburg viruses.

RIG-I Selectively Discriminates against 5'-Monophosphate RNA.

The innate immune sensor RIG-I must sensitively detect and respond to viral RNAs that enter the cytoplasm, while remaining unresponsive to the abundance of structurally similar RNAs that are the products of host metabolism. In the case of RIG-I, these viral and host targets differ by only a few atoms, and a molecular mechanism for such selective differentiation has remained elusive. Using a combination of quantitative biophysical and immunological studies, we show that RIG-I, which is normally activated by duplex RNAs containing a 5'-tri- or diphosphate (5'-ppp or 5'-pp RNAs), is actively antagonized by RNAs containing 5'-monophosphates (5'-p RNAs). This is accomplished by a gating mechanism in which an alternative RIG-I conformation blocks the C-terminal domain (CTD) upon 5'-p RNA binding, thereby short circuiting the activation of signaling.

Structural basis for IL-1α recognition by a modified DNA aptamer that specifically inhibits IL-1α signaling.

IL-1α is an essential cytokine that contributes to inflammatory responses and is implicated in various forms of pathogenesis and cancer. Here we report a naphthyl modified DNA aptamer that specifically binds IL-1α and inhibits its signaling pathway. By solving the crystal structure of the IL-1α/aptamer, we provide a high-resolution structure of this critical cytokine and we reveal its functional interaction interface with high-affinity ligands. The non-helical aptamer, which represents a highly compact nucleic acid structure, contains a wealth of new conformational features, including an unknown form of G-quadruplex. The IL-1α/aptamer interface is composed of unusual polar and hydrophobic elements, along with an elaborate hydrogen bonding network that is mediated by sodium ion. IL-1α uses the same interface to interact with both the aptamer and its cognate receptor IL-1RI, thereby suggesting a novel route to immunomodulatory therapeutics.The cytokine interleukin 1α (IL-1α) plays an important role in inflammatory processes. Here the authors use SELEX to generate a modified DNA aptamer which specifically binds IL-1α, present the structure of the IL-1α/aptamer complex and show that this aptamer inhibits the IL-1α signaling pathway.

Selective RNA targeting and regulated signaling by RIG-I is controlled by coordination of RNA and ATP binding.

RIG-I is an innate immune receptor that detects and responds to infection by deadly RNA viruses such as influenza, and Hepatitis C. In the cytoplasm, RIG-I is faced with a difficult challenge: it must sensitively detect viral RNA while ignoring the abundance of host RNA. It has been suggested that RIG-I has a 'proof-reading' mechanism for rejecting host RNA targets, and that disruptions of this selectivity filter give rise to autoimmune diseases. Here, we directly monitor RNA proof-reading by RIG-I and we show that it is controlled by a set of conserved amino acids that couple RNA and ATP binding to the protein (Motif III). Mutations of this motif directly modulate proof-reading by eliminating or enhancing selectivity for viral RNA, with major implications for autoimmune disease and cancer. More broadly, the results provide a physical explanation for the ATP-gated behavior of SF2 RNA helicases and receptor proteins.

PI3K/Akt signaling pathway is involved in the neurotrophic effect of senegenin.

Neurodegenerative diseases are frequently associated with the loss of synapses and neurons. Senegenin, extracted from the Chinese herb Polygala tenuifolia Willd, was previously found to promote neurite outgrowth and neuronal survival in primary cultured rat cortical neurons. The aim of the present study was to investigate the underlying mechanisms of senegenin-induced neurotrophic effects on rat cortical neurons. Primary cortical rat neurons were treated with various pharmacological antagonists and with or without senegenin, and subjected to MTT and western blot analysis to explore the effects of senegenin on cell survival as well as the activation of signaling pathways. Neurite outgrowth and neuronal survival induced by senegenin were significantly inhibited by A2A receptor antagonist ZM241385 and specific phosphoinositide-3 kinase (PI3K) inhibitor LY294002, but not by tropomyosin receptor kinase A receptor inhibitor K252a, mitogen-activated protein kinase kinase inhibitor PD98059 or protein kinase C inhibitor GÖ6976. Furthermore, senegenin enhanced the phosphorylation of Akt, which was blocked by LY294002. The present study revealed that the PI3K/Akt signaling pathway may be involved in the neurotrophic effects of senegenin.

[Identification of nuclear localization signals of pseudorabies virus gene UL49].

Tegument protein VP22 is encoded by Pseudorabies Virus (PRV) UL49. To identify the nuclear localization signals of UL49, it is necessary to determine the transport mechanism and biological functions of the VP22 protein. In this study, we identified two nuclear localization signals from UL49, NLS1 (5RKTRVA ADETASGARRR21) and NLS2 (241PGRKGKV247). The functional nuclear localization signal (NLS) of UL49 was identified by constructing truncated or site-specific UL49 mutants. The deletion of both NLS1 and NLS2 abrogated UL49 nuclear accumulation, whereas the deletion of NLS1 or NLS2 did not. Therefore, both NLS1 and NLS2 are critical for the nuclear localization of UL49. And our resuts showed that NLS2 is more important in this regard.

Observation of hysteretic magnetic phase transitions coupled with orientation motion of ions and dielectric relaxation in a one-dimensional nickel-bis-dithiolene molecule solid.

The second polymorph, the ß-crystal, of the nickel-bis-dithiolene compound [4'-CF3bzPy][Ni(mnt)2], where 4'-CF3bzPy = 1-(4'-trifluoromethylbenzyl)pyridinium and mnt(2-) = maleonitriledithiolate, was obtained. The variable-temperature single crystal structures, magnetic behavior in 1.8-300 K and dielectric nature in 123-373 K have been investigated for the ß-crystal. This polymorph experiences two hysteretic magnetic phase transitions in a narrow temperature region (190-217 K) with the thermal hysteresis loops ca. 6 K and ca. 11 K. The two hysteretic magnetic phase transitions are coupled with two isostructural phase transitions (IPTs), respectively, which are driven by the novel step-wise dynamic orientation motion of the anion and cation in the ß-crystal. There is an absence of a dielectric anomaly in the structural transformation temperature interval. However, a dielectric relaxation, related to the dipole motion of polar CF3 groups in the cations under an ac electrical field, emerges in the high-temperature phase.

Intercalated supramolecular compounds of kaolinite with ethanolamine and ethylene glycol: structures and dielectric properties.

Kaolinite (K), a polar and layered aluminosilicate mineral, was used as the host; ethanolamine (EOA) and ethylene glycol (EG) were inserted into the kaolinite interlayer to give the intercalated supramolecular compounds kaolinite-ethanolamine (K-EOA) and kaolinite-ethylene glycol (K-EG), respectively. The intercalation of EOA and EG resulted in an increase in the d(001)-value by 3.4 and 3.68 Å, which corresponds to expansion of the interlayer space by 156.7 Å(3) in K-EOA and 169.6 Å(3) in K-EG, respectively. The characteristic infrared-active ν(O-H) modes ν1, ν2 and ν3 besides ν5, which were quite sensitive to the host-guest interaction, were not significantly affected by intercalation in K-EOA and K-EG, and two intercalated compounds showed lower deintercalation temperature (115 and 109 °C for K-EOA and K-EG, respectively). These are due to weakly intermolecular interactions between the intercalant molecules and the kaolinite framework, which is in agreement with the theoretical analysis of crystal structures of the intercalated compounds. K-EOA and K-EG showed novel dielectric relaxation behavior, which originates from the dynamic orientation motion of intercalant molecules.

Disorder-order transformation and significant dislocation motion cooperating with a surprisingly large hysteretic magnetic transition in a nickel-bisdithiolene spin system.

The compound [4'-CF3bzPy][Ni(mnt)2] (1) (where 4'-CF3bzPy = 1-(4'-(trifluoromethyl)benzyl)pyridinium and mnt(2-) = maleonitriledithiolate) was synthesized and displays a magnetic bistability with a surprisingly large thermal hysteresis loop (~49 K). X-ray crystallographic studies reveal that in the high-temperature (HT) phase the anions and cations form mixed stacks, with alternating anion dimers (AA) and cation dimers (CC) in an ...AACCAACC... fashion along the crystallographic a + b direction, and disordered CF3 groups in the cations are aligned into a molecular layer parallel to the crystallographic (001) plane. However, in the low-temperature (LT) phase, the c-axis length of the unit cell is roughly doubled, and the asymmetric unit switches from one [4'-CF3bzPy][Ni(mnt)2] pair in the HT phase to two [4'-CF3bzPy][Ni(mnt)2] pairs. Most interestingly, the CF3 group in the cations becomes ordered, and the conformation of one of two crystallographically different cations changes significantly. A dislocation motion between the neighboring molecular layers emerges as well. The analyses of the magnetic susceptibilities and the density functional theory calculations suggest that the antiferromagnetic exchange interaction within one of two types of [Ni(mnt)2]2(2-) dimers in the LT phase is much stronger than that within the [Ni(mnt)2]2(2-) dimer in the HT phase. The lattice reorganization during this phase transition is proposed to be responsible for the wide thermal hysteresis loop.

Influence of isotope substitution on lattice and spin-Peierls-type transition features in one-dimensional nickel bis-dithiolene spin systems.

Four new 1D spin-Peierls-type compounds, [D(5)]1-(4'-R-benzyl)pyridinium bis(maleonitriledithiolato)nickelate ([D(5)]R-Py; R=F, I, CH(3), and NO(2)), were synthesized and characterized structurally and magnetically. These 1D compounds are isostructural with the corresponding non-deuterated compounds, 1-(4'-R-benzyl)pyridinium bis(maleonitriledithiolato)nickelate (R-Py; R=F, I, CH(3), and NO(2)). Compounds [D(5)]R-Py and R-Py (R=F, I, CH(3), and NO(2)) crystallize in the monoclinic space group P2(1)/c with uniform stacks of anions and cations in the high-temperature phase and triclinic space group P1 with dimerized stacks of anions and cations in the low-temperature phase. Similar to the non-deuterated R-Py compounds, a spin-Peierls-type transition occurs at a critical temperature for each [D(5)]R-Py compound; the magnetic character of the 1D S=1/2 ferromagnetic chain for [D(5)]F-Py and the 1D S=1/2 Heisenberg antiferromagnetic chain for others appear above the transition temperature. Spin-gap magnetic behavior was observed for all of these compounds below the transition temperature. In comparison to the corresponding R-Py compound, the cell volume is almost unchanged for [D(5)]F-Py and shows slight expansion for [D(5)]R-Py (R=I, CH(3), and NO(2)) as well as an increase in the spin-Peierls-type transition temperature for all of these 1D compounds in the order of F>I≈CH(3)≈NO(2). The large isotopic effect of nonmagnetic countercations on the spin-Peierls-type transition critical temperature, T(C), can be attributed to the change in ω(0) with isotope substitution.

Observation of intramolecular vibrations cooperating with the magnetic phase transition in a nickel-bis-dithiolene compound.

A new one-dimensional (1-D) ion-pair compound, [1,7-bis(1-methylimidazolium)heptane][Ni(mnt)(2)](2) (mnt(2-) = maleonitriledithiolate), was synthesized and characterized structurally and magnetically. This compound shows a spin-Peierls-type transition at around 235 K. Its crystal structure belongs to the monoclinic system with space group C2/c and the magnetic [Ni(mnt)(2)](-) anions form uniform stacks in the high-temperature (HT) phase. The crystal undergoes a transformation into the triclinic space group P1 accompanied by the magnetic transition and the anion stacks become dimerized in the low-temperature (LT) phase. The entropy changes (ΔS) are estimated to be 0.772 J K(-1) mol(-1) for the spin-Peierls-type transition, from DSC data, which is much less than the spin entropy change (ΔS = R ln 2 ≈ 5.76 J K(-1) mol(-1)), indicating that a substantial short-range order persists above the transition temperature. The variable temperature IR spectra showed that the peak positions and intensities for the bands near 1160 and 725 cm(-1), which correspond respectively to the ν(C-C) + ν(C-S) mode of the mnt(2-) ligands and the rocking vibration mode of the methylene group γ(r)(CH(2)) in the cation moiety, undergo an abrupt change at around 240 K, close to the transition temperature. This observation demonstrates that the intramolecular vibrations of both the anion and the counter-cation probably couple with the spins to cooperate with the spin-Peierls-type phase transition in this 1-D spin system.

Crystal structures of aprataxin ortholog Hnt3 reveal the mechanism for reversal of 5'-adenylated DNA.

Aprataxin is a DNA deadenylase that resolves DNA 5'-AMP termini and reverses abortive DNA ligation. The crystal structures of Schizosaccharomyces pombe aprataxin Hnt3 in its apo form and in complex to dsDNA and dsDNA-AMP reveal how Hnt3 recognizes and processes 5'-adenylated DNA in a structure-specific manner. The bound DNA adopts a 5'-flap conformation that facilitates 5'-AMP access to the active site, where AMP cleavage occurs by a canonical catalytic mechanism.