Nonadiabatic Charge Transfer within Photoexcited Nickel Porphyrins.

Metalloporphyrins with open d-shell ions can drive biochemical energy cycles. However, their utilization in photoconversion is hampered by rapid deactivation. Mapping the relaxation pathways is essential for elaborating strategies that can favorably alter the charge dynamics through chemical design and photoexcitation conditions. Here, we combine transient optical absorption spectroscopy and transient X-ray emission spectroscopy with femtosecond resolution to probe directly the coupled electronic and spin dynamics within a photoexcited nickel porphyrin in solution. Measurements and calculations reveal that a state with charge-transfer character mediates the formation of the thermalized excited state, thereby advancing the description of the photocycle for this important representative molecule. More generally, establishing that intramolecular charge-transfer steps play a role in the photoinduced dynamics of metalloporphyrins with open d-shell sets a conceptual ground for their development as building blocks capable of boosting nonadiabatic photoconversion in functional architectures through "hot" charge transfer down to the attosecond time scale.

Demethylation of Methylmercury in Bird, Fish, and Earthworm.

Toxicity of methylmercury (MeHg) to wildlife and humans results from its binding to cysteine residues of proteins, forming MeHg-cysteinate (MeHgCys) complexes that hinder biological functions. MeHgCys complexes can be detoxified in vivo, yet how this occurs is unknown. We report that MeHgCys complexes are transformed into selenocysteinate [Hg(Sec)4] complexes in multiple animals from two phyla (a waterbird, freshwater fish, and earthworms) sampled in different geographical areas and contaminated by different Hg sources. In addition, high energy-resolution X-ray absorption spectroscopy (HR-XANES) and chromatography-inductively coupled plasma mass spectrometry of the waterbird liver support the binding of Hg(Sec)4 to selenoprotein P and biomineralization of Hg(Sec)4 to chemically inert nanoparticulate mercury selenide (HgSe). The results provide a foundation for understanding mercury detoxification in higher organisms and suggest that the identified MeHgCys to Hg(Sec)4 demethylation pathway is common in nature.

Chemical Sensitivity of Kß and Kα X-ray Emission from a Systematic Investigation of Iron Compounds.

K-fluorescence X-ray emission spectroscopy (XES) is receiving growing interest in all fields of natural sciences to investigate the local spin. The spin sensitivity in Kß (Kα) XES stems from the exchange interaction between the unpaired 3p (2p) and the 3d electrons, which is greater for Kß than for Kα. We present a thorough investigation of a large number of iron-bearing compounds. The experimental spectra were analyzed in terms of commonly used quantitative parameters (Kß1,3-first moment, Kα1-full width at half-maximum, and integrated absolute difference -IAD-), and we carefully examined the difference spectra. Multiplet calculations were also performed to elucidate the underlying mechanisms that lead to the chemical sensitivity. Our results confirm a strong influence of covalency on both Kß and Kα lines. We establish a reliable spin sensitivity of Kß XES as it is dominated by the exchange interaction, whose variations can be quantified by either Kß1,3-first moment or Kß-IAD and result in a systematic difference signal line shape. We find an exception in the Kß XES of Fe3+ and Fe2+ in water solution, where a new difference spectrum is identified that cannot be reproduced by scaling the exchange integrals. We explain this by strong differences in orbital mixing between the valence orbitals. This result calls for caution in the interpretation of Kß XES spectral changes as due to spin variations without a careful analysis of the line shape. For Kα XES, the smaller exchange interaction and the influence of other electron-electron interactions make it difficult to extract a quantity that directly relates to the spin.

Multilevel Approaches within the Local Pair Natural Orbital Framework.

The linear-scaling local coupled cluster method DLPNO-CCSD(T) allows calculations on systems containing hundreds of atoms to be performed while reproducing canonical CCSD(T) energies typically with chemical accuracy (<1 kcal/mol). The accuracy of the method is determined by two main truncation thresholds that control the number of electron pairs included in the CCSD iterations and the size of the pair natural orbital virtual space for each electron pair, respectively. While the results of DLPNO-CCSD(T) calculations converge smoothly toward their canonical counterparts as the thresholds are tightened, the improved accuracy is accompanied by a fairly steep increase of the computational cost. Many applications study events that are confined to a relatively small region of the system of interest. Hence, it is viable to develop methods that allow the user to treat different parts of a large system at various levels of accuracy. In this work we present an extension to the native DLPNO method that fragments the system into preselected molecular parts and uses different thresholds or even different levels of theory for the interaction between individual fragments. Thereby chemical intuition can be used to focus computational resources on a more accurate evaluation of the properties at the center of interest, while permitting a less demanding description of the surrounding moieties. The strategy was implemented within the DLPNO-CCSD(T) framework. We tested the scheme for a series of realistic quantum chemical applications such as the calculation of the dimerization energies, potential energy surfaces, enantiomeric excess in organometallic catalysis, and the binding energy of the anticancer drug ellipticine to DNA. This work demonstrates the power of the approach and offers guidance to its setup.

The iron-sulfur core in Rieske proteins is not symmetric.

At variance with ferredoxins, Rieske-type proteins contain a chemically asymmetric iron-sulfur cluster. Nevertheless, X-ray crystallography apparently finds their [2Fe-2S] cores to be structurally symmetric or very close to symmetric (i.e. the four iron-sulfur bonds in the [2Fe-2S] core are equidistant). Using a combination of advanced density-based approaches, including finite-temperature molecular dynamics to access thermal fluctuations and free-energy profiles, in conjunction with correlated wavefunction-based methods we clearly predict an asymmetric core structure. This reveals a fundamental and intrinsic difference within the iron-sulfur clusters hosted by Rieske proteins and ferredoxins and thus opens up a new dimension for the ongoing efforts in understanding the role of Rieske-type [2Fe-2S] cluster in electron transfer processes that occur in almost all biological systems.

Azurin as a protein scaffold for a low-coordinate nonheme iron site with a small-molecule binding pocket.

The apoprotein of Pseudomonas aeruginosa azurin binds iron(II) to give a 1:1 complex, which has been characterized by electronic absorption, Mössbauer, and NMR spectroscopies, as well as X-ray crystallography and quantum-chemical computations. Despite potential competition by water and other coordinating residues, iron(II) binds tightly to the low-coordinate site. The iron(II) complex does not react with chemical redox agents to undergo oxidation or reduction. Spectroscopically calibrated quantum-chemical computations show that the complex has high-spin iron(II) in a pseudotetrahedral coordination environment, which features interactions with side chains of two histidines and a cysteine as well as the C═O of Gly45. In the (5)A(1) ground state, the d(z(2)) orbital is doubly occupied. Mutation of Met121 to Ala leaves the metal site in a similar environment but creates a pocket for reversible binding of small anions to the iron(II) center. Specifically, azide forms a high-spin iron(II) complex and cyanide forms a low-spin iron(II) complex.