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1.
Viruses ; 14(8)2022 07 28.
Artigo em Inglês | MEDLINE | ID: mdl-36016286

RESUMO

Severe fever with thrombocytopenia syndrome (SFTS) is an infectious disease with a high case fatality rate caused by the SFTS virus, and currently there are no approved specific treatments. Neutralizing monoclonal antibodies (mAbs) against the virus could be a therapeutic agent in SFTS treatment, but their development has not sufficiently been carried out. In the present study, mouse and human mAbs exposed to the viral envelope proteins Gn and Gc (16 clones each) were characterized in vitro and in vivo by using recombinant proteins, cell culture with viruses, and an SFTS animal model with IFNAR-/- mice. Neutralization activities against the recombinant vesicular stomatitis virus bearing SFTS virus Gn/Gc as envelope proteins were observed with three anti-Gn and six anti-Gc mAbs. Therapeutic activities were observed among anti-Gn, but not anti-Gc mAbs with neutralizing activities. These results propose an effective strategy to obtain promising therapeutic mAb candidates for SFTS treatment, and a necessity to reveal precise roles of the SFTS virus Gn/Gc proteins.


Assuntos
Phlebovirus , Febre Grave com Síndrome de Trombocitopenia , Animais , Anticorpos Monoclonais/uso terapêutico , Anticorpos Neutralizantes/uso terapêutico , Anticorpos Antivirais/uso terapêutico , Modelos Animais de Doenças , Humanos , Camundongos , Proteínas do Envelope Viral/metabolismo
2.
Virology ; 556: 124-132, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33561699

RESUMO

The heartland virus (HRTV) is a novel phlebovirus that causes severe infections in the USA and closely related to the severe fever thrombocytopenia syndrome virus (SFTSV), a causative agent for SFTS in Asia. The entry mechanisms of HRTV remain unclear. Here, we developed the pseudotyped vesicular stomatitis virus bearing the HRTV glycoprotein (GP) (HRTVpv), and the antigenicity and the entry mechanisms of HRTV were analyzed. HRTVpv was neutralized by anti-SFTSV Gc antibody, but not the anti-SFTSV Gn antibodies. Entry of HRTVpv to cells was inhibited by bafilomycin A1 and dynasore, and but it was enhanced in cells overexpressed with C-type lectins. Production of infectious HRTVpv and SFTSVpv was reduced by Nn-DNJ, α-glucosidase inhibitor. The entry of HRTV occurs via pH- and dynamin-dependent endocytosis. Furthermore, Nn-DNJ may be a possible therapeutic agent against HRTV and SFTSV.


Assuntos
Infecções por Bunyaviridae/virologia , Phlebovirus/patogenicidade , Estomatite Vesicular/virologia , Vesiculovirus/patogenicidade , Proteínas do Envelope Viral/metabolismo , 1-Desoxinojirimicina/análogos & derivados , 1-Desoxinojirimicina/farmacologia , Animais , Linhagem Celular , Cricetinae , Haplorrinos , Humanos , Camundongos , Internalização do Vírus
3.
Int J Hematol ; 113(3): 436-440, 2021 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-33222048

RESUMO

Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne viral hemorrhagic disease with a high fatality rate. It is caused by the SFTS virus and is endemic in East Asian countries such as China, South Korea, and Japan. Previous studies have shown that plasmablasts appear transiently in peripheral blood during the acute phase of SFTS, but do not specify the characteristics of these plasmablasts. In this report, we describe the features of peripheral blood plasmablasts in a patient with SFTS. Immunohistochemical and immunofluorescence staining detected a small number of atypical lymphocytes expressing the SFTS virus antigen among peripheral leukocytes in a blood sample. The phenotype of the virus-infected cells was CD27+, CD38+, MUM1+, and CD138+, which is consistent with that of plasmablasts. This novel study demonstrates that plasmablasts in the peripheral blood of patients with SFTS are targets of the SFTS virus.


Assuntos
Phlebovirus/isolamento & purificação , Plasmócitos/virologia , Células Precursoras de Linfócitos B/virologia , Febre Grave com Síndrome de Trombocitopenia/sangue , Viremia/sangue , ADP-Ribosil Ciclase 1/análise , Idoso , Animais , Antígenos Virais/análise , Mordeduras e Picadas/virologia , Gatos , Humanos , Imunofenotipagem , Fatores Reguladores de Interferon/análise , Masculino , Glicoproteínas de Membrana/análise , Plasmócitos/química , Células Precursoras de Linfócitos B/química , Febre Grave com Síndrome de Trombocitopenia/virologia , Sindecana-1/análise , Membro 7 da Superfamília de Receptores de Fatores de Necrose Tumoral/análise , Viremia/virologia
4.
J Gen Virol ; 101(8): 840-852, 2020 08.
Artigo em Inglês | MEDLINE | ID: mdl-32553066

RESUMO

The genetic diversity of enterovirus G (EV-G) was investigated in the wild-boar population in Japan. EV-G-specific reverse transcription PCR demonstrated 30 (37.5 %) positives out of 80 faecal samples. Of these, viral protein 1 (VP1) fragments of 20 samples were classified into G1 (3 samples), G4 (1 sample), G6 (2 samples), G8 (4 samples), G11 (1 sample), G12 (7 samples), G14 (1 sample) and G17 (1 sample), among which 11 samples had a papain-like cysteine protease (PL-CP) sequence, believed to be the first discoveries in G1 (2 samples) or G17 (1 sample) wild-boar EV-Gs, and in G8 (2 samples) or G12 (6 samples) EV-Gs from any animals. Sequences of the non-structural protein regions were similar among EV-Gs possessing the PL-CP sequence (PL-CP EV-Gs) regardless of genotype or origin, suggesting the existence of a common ancestor for these strains. Interestingly, for the two G8 and two G12 samples, the genome sequences contained two versions, with or without the PL-CP sequence, together with the homologous 2C/PL-CP and PL-CP/3A junction sequences, which may explain how the recombination and deletion of the PL-CP sequences occured in the PL-CP EV-G genomes. These findings shed light on the genetic plasticity and evolution of EV-G.


Assuntos
Proteínas do Capsídeo/genética , Cisteína Proteases/genética , Infecções por Enterovirus/virologia , Fezes/virologia , Papaína/genética , Sus scrofa/virologia , Animais , Enterovirus Suínos , Variação Genética/genética , Genoma Viral/genética , Genótipo , Japão , Filogenia , Recombinação Genética/genética , Suínos , Doenças dos Suínos/virologia
5.
J Clin Invest ; 130(2): 799-812, 2020 02 03.
Artigo em Inglês | MEDLINE | ID: mdl-31904586

RESUMO

Severe fever with thrombocytopenia syndrome (SFTS) is an emerging hemorrhagic fever caused by a tick-borne banyangvirus and is associated with high fatality. Despite increasing incidence of SFTS and serious public health concerns in East Asia, the pathogenesis of lethal SFTS virus (SFTSV) infection in humans is not fully understood. Numbers of postmortem examinations to determine target cells of the viral infection have so far been limited. Here we showed that B cells differentiating into plasmablasts and macrophages in secondary lymphoid organs were targets for SFTSV at the end stage of lethal infection, and the majority of SFTSV-infected cells were B cell-lineage lymphocytes. In affected individuals, B cell-lineage lymphocytes with SFTSV infection were widely distributed in both lymphoid and nonlymphoid organs, and infiltration of these cells into the capillaries of the organs could be observed occasionally. Moreover, a human plasmablastic lymphoma cell line, PBL-1, was susceptible to SFTSV propagation and had a similar immunophenotype to that of target cells of SFTSV in fatal SFTS. PBL-1 can therefore provide a potential in vitro model for human SFTSV infection. These results extend our understanding of the pathogenesis of human lethal SFTSV infection and can facilitate the development of SFTSV countermeasures.


Assuntos
Diferenciação Celular/imunologia , Febre por Flebótomos/imunologia , Phlebovirus/imunologia , Plasmócitos/imunologia , Linhagem Celular , Feminino , Humanos , Masculino , Febre por Flebótomos/mortalidade , Febre por Flebótomos/patologia , Plasmócitos/patologia
6.
J Orthop Sci ; 24(2): 275-279, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30279133

RESUMO

BACKGROUND: Recently, the topical application of tranexamic acid has become widespread, and it is effective in reducing postoperative blood loss and transfusion rate in total hip arthroplasty. There is no consensus on the optimal dose of topical tranexamic acid. This study aimed to assess the efficacy and safety of topical tranexamic acid on postoperative blood loss and determine the optimal topical dose for primary total hip arthroplasty. METHODS: This prospective cohort study with a robust protocol enrolled 79 patients who received either 1 or 2 g of topical tranexamic acid in 30 mL normal saline solution or an equivalent volume of normal saline at the end of surgery. The primary outcomes were postoperative drain blood loss and hemoglobin decrease on postoperative day 7. The secondary outcomes were transfusion rate, d-dimer level on postoperative day 7, symptomatic deep vein thrombosis rate, and duration of hospital stay. RESULTS: Both 1 and 2 g tranexamic acid significantly reduced postoperative drain blood loss (p < 0.001). These doses also reduced the hemoglobin concentration decrease on postoperative day 7, but not significantly. Furthermore, 1 and 2 g doses of tranexamic acid had similar effects on postoperative blood loss and hemoglobin concentration decrease. There was no difference in the transfusion rate, d-dimer level, symptomatic deep vein thrombosis rate, and length of hospital stay. CONCLUSIONS: The use of topical tranexamic acid at the end of surgery is effective and safe for reducing postoperative blood loss in primary total hip arthroplasty. Topical tranexamic acid at a dose of 1 g may be sufficient and cost-effective, with fewer side effects than the higher dose.


Assuntos
Antifibrinolíticos/administração & dosagem , Artroplastia de Quadril/métodos , Osteoartrite do Quadril/cirurgia , Hemorragia Pós-Operatória/prevenção & controle , Ácido Tranexâmico/administração & dosagem , Administração Tópica , Idoso , Artroplastia de Quadril/efeitos adversos , Estudos de Coortes , Relação Dose-Resposta a Droga , Feminino , Humanos , Cuidados Intraoperatórios/métodos , Masculino , Pessoa de Meia-Idade , Osteoartrite do Quadril/diagnóstico por imagem , Estudos Prospectivos , Valores de Referência , Resultado do Tratamento
7.
Adv Biol Regul ; 68: 10-12, 2018 05.
Artigo em Inglês | MEDLINE | ID: mdl-29588208

RESUMO

Adult T-cell leukemia-lymphoma (ATL) is a refractory T-cell malignancy caused by infection of human T-cell leukemia virus type I (HTLV-I). Although the pathogenesis of ATL remains unclear, HTLV-1 oncoprotein Tax plays an important role in pathogenesis (Matsuoka, 2003; Jeang et al., 2004). Chemotherapy resistance of ATL leads the poor prognosis of this disease. In order to understand the pathogenesis and establish an animal model useful for therapy attempts, we have generated HTLV-1 Tax transgenic mice using the Lck proximal promoter to restrict the Tax expression in T-cells. The HTLV-1 Tax transgenic mice developed diffuse large-cell lymphomas and leukemia with the similar features of a clinical, pathological and immunological characteristic of acute ATL. The fulminant disease also developed rapidly in SCID mice after engraftment of mouse ATL cells derived from the transgenic mice. In this review, we introduce the therapeutic attempts using this animal model and discuss the possible signaling pathway for a therapeutic target.


Assuntos
Vírus Linfotrópico T Tipo 1 Humano/genética , Leucemia-Linfoma de Células T do Adulto/metabolismo , Leucemia-Linfoma de Células T do Adulto/terapia , Leucemia/metabolismo , Leucemia/terapia , Linfoma Difuso de Grandes Células B/metabolismo , Animais , Modelos Animais de Doenças , Leucemia/genética , Leucemia-Linfoma de Células T do Adulto/genética , Linfoma Difuso de Grandes Células B/genética , Camundongos , Camundongos SCID , Camundongos Transgênicos , Transdução de Sinais/genética , Transdução de Sinais/fisiologia
8.
BMC Microbiol ; 17(1): 18, 2017 01 17.
Artigo em Inglês | MEDLINE | ID: mdl-28095784

RESUMO

BACKGROUND: Bovine enterovirus (BEV) belongs to the species Enterovirus E or F, genus Enterovirus and family Picornaviridae. Although numerous studies have identified BEVs in the feces of cattle with diarrhea, the pathogenicity of BEVs remains unclear. Previously, we reported the detection of novel kobu-like virus in calf feces, by metagenomics analysis. In the present study, we identified a novel BEV in diarrheal feces collected for that survey. Complete genome sequences were determined by deep sequencing in feces. Secondary RNA structure analysis of the 5' untranslated region (UTR), phylogenetic tree construction and pairwise identity analysis were conducted. RESULTS: The complete genome sequences of BEV were genetically distant from other EVs and the VP1 coding region contained novel and unique amino acid sequences. We named this strain as BEV AN12/Bos taurus/JPN/2014 (referred to as BEV-AN12). According to genome analysis, the genome length of this virus is 7414 nucleotides excluding the poly (A) tail and its genome consists of a 5'UTR, open reading frame encoding a single polyprotein, and 3'UTR. The results of secondary RNA structure analysis showed that in the 5'UTR, BEV-AN12 had an additional clover leaf structure and small stem loop structure, similarly to other BEVs. In pairwise identity analysis, BEV-AN12 showed high amino acid (aa) identities to Enterovirus F in the polyprotein, P2 and P3 regions (aa identity ≥82.4%). Therefore, BEV-AN12 is closely related to Enterovirus F. However, aa sequences in the capsid protein regions, particularly the VP1 encoding region, showed significantly low aa identity to other viruses in genus Enterovirus (VP1 aa identity ≤58.6%). In addition, BEV-AN12 branched separately from Enterovirus E and F in phylogenetic trees based on the aa sequences of P1 and VP1, although it clustered with Enterovirus F in trees based on sequences in the P2 and P3 genome region. CONCLUSIONS: We identified novel BEV possessing highly divergent aa sequences in the VP1 coding region in Japan. According to species definition, we proposed naming this strain as "Enterovirus K", which is a novel species within genus Enterovirus. Further genomic studies are needed to understand the pathogenicity of BEVs.


Assuntos
Sequência de Aminoácidos/genética , Proteínas do Capsídeo/genética , Doenças dos Bovinos/virologia , Enterovirus Bovino/genética , Enterovirus Bovino/isolamento & purificação , Regiões 3' não Traduzidas/genética , Regiões 5' não Traduzidas/genética , Animais , Sequência de Bases , Bovinos , Diarreia/veterinária , Infecções por Enterovirus/virologia , Enterovirus Bovino/classificação , Enterovirus Bovino/patogenicidade , Fezes/virologia , Genoma Viral , Sequenciamento de Nucleotídeos em Larga Escala/métodos , Japão , Metagenômica/métodos , Fases de Leitura Aberta/genética , Filogenia , RNA Viral/química , RNA Viral/genética , Proteínas Virais/genética
9.
J Vet Med Sci ; 79(3): 517-523, 2017 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-28070089

RESUMO

Bovine respiratory disease complex (BRDC) is frequently found in cattle worldwide. The etiology of BRDC is complicated by infections with multiple pathogens, making identification of the causal pathogen difficult. Here, we developed a detection system by applying TaqMan real-time PCR (Dembo respiratory-PCR) to screen a broad range of microbes associated with BRDC in a single run. We selected 16 bovine respiratory pathogens (bovine viral diarrhea virus, bovine coronavirus, bovine parainfluenza virus 3, bovine respiratory syncytial virus, influenza D virus, bovine rhinitis A virus, bovine rhinitis B virus, bovine herpesvirus 1, bovine adenovirus 3, bovine adenovirus 7, Mannheimia haemolytica, Pasteurella multocida, Histophilus somni, Trueperella pyogenes, Mycoplasma bovis and Ureaplasma diversum) as detection targets and designed novel specific primer-probe sets for nine of them. The assay performance was assessed using standard curves from synthesized DNA. In addition, the sensitivity of the assay was evaluated by spiking solutions extracted from nasal swabs that were negative by Dembo respiratory-PCR for nucleic acids of pathogens or synthesized DNA. All primer-probe sets showed high sensitivity. In this study, a total of 40 nasal swab samples from cattle on six farms were tested by Dembo respiratory-PCR. Dembo respiratory-PCR can be applied as a screening system with wide detection targets.


Assuntos
Complexo Respiratório Bovino/microbiologia , Complexo Respiratório Bovino/virologia , Reação em Cadeia da Polimerase em Tempo Real/veterinária , Animais , Reprodutibilidade dos Testes , Sensibilidade e Especificidade
10.
Zoolog Sci ; 33(3): 272-81, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27268981

RESUMO

Hatching gland cells (HGCs) originate from different germ layers between frogs and teleosts, although the hatching enzyme genes are orthologous. Teleostei HGCs differentiate in the mesoendodermal cells at the anterior end of the involved hypoblast layer (known as the polster) in late gastrula embryos. Conversely, frog HGCs differentiate in the epidermal cells at the neural plate border in early neurula embryos. To infer the transition in the developmental origin of HGCs, we studied two basal ray-finned fishes, bichir (Polypterus) and sturgeon. We observed expression patterns of their hatching enzyme (HE) and that of three transcription factors that are critical for HGC differentiation: KLF17 is common to both teleosts and frogs; whereas FoxA3 and Pax3 are specific to teleosts and frogs, respectively. We then inferred the transition in the developmental origin of HGCs. In sturgeon, the KLF17, FoxA3, and HE genes were expressed during the tailbud stage in the cell mass at the anterior region of the body axis, a region corresponding to the polster in teleost embryos. In contrast, the bichir was suggested to possess both teleost- and amphibian-type HGCs, i.e. the KLF17 and FoxA3 genes were expressed in the anterior cell mass corresponding to the polster, and the KLF17, Pax3 and HE genes were expressed in dorsal epidermal layer of the head. The change in developmental origin is thought to have occurred during the evolution of basal ray-finned fish, because bichir has two HGCs, while sturgeon only has the teleost-type.


Assuntos
Anuros/classificação , Anuros/fisiologia , Evolução Biológica , Diferenciação Celular , Embrião não Mamífero/citologia , Peixes/classificação , Peixes/fisiologia , Animais , Endoderma/citologia , Proteínas de Peixes/genética , Regulação da Expressão Gênica no Desenvolvimento , Metaloendopeptidases/genética , Placa Neural/citologia , Filogenia , Fatores de Transcrição/genética
11.
Virus Genes ; 51(1): 136-9, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25956292

RESUMO

Bats are natural hosts of many zoonotic viruses. Monitoring bat viruses is important to detect novel bat-borne infectious diseases. In this study, next generation sequencing techniques and conventional PCR were used to analyze intestine, lung, and blood clot samples collected from wild bats captured at three locations in Davao region, in the Philippines in 2012. Different viral genes belonging to the Retroviridae and Herpesviridae families were identified using next generation sequencing. The existence of herpesvirus in the samples was confirmed by PCR using herpesvirus consensus primers. The nucleotide sequences of the resulting PCR amplicons were 166-bp. Further phylogenetic analysis identified that the virus from which this nucleotide sequence was obtained belonged to the Gammaherpesvirinae subfamily. PCR using primers specific to the nucleotide sequence obtained revealed that the infection rate among the captured bats was 30 %. In this study, we present the partial genome of a novel gammaherpesvirus detected from wild bats. Our observations also indicate that this herpesvirus may be widely distributed in bat populations in Davao region.


Assuntos
Quirópteros/virologia , DNA Viral/química , DNA Viral/genética , Gammaherpesvirinae/classificação , Gammaherpesvirinae/isolamento & purificação , Infecções por Herpesviridae/veterinária , Animais , Análise por Conglomerados , Gammaherpesvirinae/genética , Infecções por Herpesviridae/virologia , Dados de Sequência Molecular , Filipinas , Filogenia , Reação em Cadeia da Polimerase , Análise de Sequência de DNA , Homologia de Sequência
12.
Biointerphases ; 10(2): 029515, 2015 Jun 06.
Artigo em Inglês | MEDLINE | ID: mdl-25947389

RESUMO

Atmospheric pressure DC-driven self-pulsing transient spark (TS) discharge operated in air and pulse-driven dielectric barrier discharge plasma jet (PJ) operated in helium in contact with water solutions were used for inducing chemical effects in water solutions, and the treatment of bacteria (Escherichia coli), mammalian cells (Vero line normal cells, HeLa line cancerous cells), deoxyribonucleic acid (dsDNA), and protein (bovine serum albumin). Two different methods of water solution supply were used in the TS: water electrode system and water spray system. The effects of both TS systems and the PJ were compared, as well as a direct exposure of the solution to the discharge with an indirect exposure to the discharge activated gas flow. The chemical analysis of water solutions was performed by using colorimetric methods of UV-VIS absorption spectrophotometry. The bactericidal effects of the discharges on bacteria were evaluated by standard microbiological plate count method. Viability, apoptosis and cell cycle were assessed in normal and cancerous cells. Viability of cells was evaluated by trypan blue exclusion test, apoptosis by Annexin V-FITC/propidium iodide assay, and cell cycle progression by propidium iodide/RNase test. The effect of the discharges on deoxyribonucleic acid and protein were evaluated by fluorescence and UV absorption spectroscopy. The results of bacterial and mammalian cell viability, apoptosis, and cell cycle clearly show that cold plasma can inactivate bacteria and selectively target cancerous cells, which is very important for possible future development of new plasma therapeutic strategies in biomedicine. The authors found that all investigated bio-effects were stronger with the air TS discharge than with the He PJ, even in indirect exposure.


Assuntos
Biopolímeros/metabolismo , Eletricidade , Células Epiteliais/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Hélio/metabolismo , Gases em Plasma , Água/química , Ar , Animais , Sobrevivência Celular/efeitos dos fármacos , Chlorocebus aethiops , Células Epiteliais/fisiologia , Escherichia coli/fisiologia , Células HeLa , Humanos , Viabilidade Microbiana/efeitos dos fármacos , Células Vero
13.
J Exp Biol ; 216(Pt 9): 1609-15, 2013 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-23348940

RESUMO

Embryos of medaka Oryzias latipes hatch in freshwater, while those of killifish Fundulus heteroclitus hatch in brackish water. Medaka and Fundulus possess two kinds of hatching enzymes, high choriolytic enzyme (HCE) and low choriolytic enzyme (LCE), which cooperatively digest their egg envelope at the time of hatching. Optimal salinity of medaka HCE was found in 0 mol l(-1) NaCl, and activity decreased with increasing salt concentrations. One of the two Fundulus HCEs, FHCE1, showed the highest activity in 0 mol l(-1) NaCl, and the other, FHCE2, showed the highest activity in 0.125 mol l(-1) NaCl. The results suggest that the salt dependencies of HCEs are well adapted to each salinity at the time of hatching. Different from HCE, LCEs of both species maintained the activity sufficient for egg envelope digestion in various salinities. The difference in amino acid sequence between FHCE1 and FHCE2 was found at only a single site at position 36 (Gly/Arg), suggesting that this single substitution causes the different salt dependency between the two enzymes. Superimposition of FHCE1 and FHCE2 with the 3-D structure model of medaka HCE revealed that position 36 was located on the surface of HCE molecule, far from its active site cleft. The results suggest a hypothesis that position 36 influences salt-dependent activity of HCE, not with recognition of primary structure around the cleavage site, but with recognition of higher ordered structure of egg envelope protein.


Assuntos
Adaptação Fisiológica/efeitos dos fármacos , Substituição de Aminoácidos/genética , Evolução Molecular , Fundulidae/metabolismo , Metaloendopeptidases/genética , Oryzias/metabolismo , Cloreto de Sódio/farmacologia , Sequência de Aminoácidos , Animais , Clonagem Molecular , DNA Complementar/genética , Embrião não Mamífero/efeitos dos fármacos , Embrião não Mamífero/enzimologia , Metaloendopeptidases/química , Metaloendopeptidases/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Óvulo/efeitos dos fármacos , Óvulo/metabolismo , Peptídeos/metabolismo , Salinidade , Solubilidade , Especificidade por Substrato/efeitos dos fármacos
14.
PLoS One ; 6(2): e16880, 2011 Feb 18.
Artigo em Inglês | MEDLINE | ID: mdl-21365003

RESUMO

BACKGROUND: Alternative splicing, which produces multiple mRNAs from a single gene, occurs in most human genes and contributes to protein diversity. Many alternative isoforms are expressed in a spatio-temporal manner, and function in diverse processes, including in the neural system. METHODOLOGY/PRINCIPAL FINDINGS: The purpose of the present study was to comprehensively investigate neural-splicing using P19 cells. GeneChip Exon Array analysis was performed using total RNAs purified from cells during neuronal cell differentiation. To efficiently and readily extract the alternative exon candidates, 9 filtering conditions were prepared, yielding 262 candidate exons (236 genes). Semiquantitative RT-PCR results in 30 randomly selected candidates suggested that 87% of the candidates were differentially alternatively spliced in neuronal cells compared to undifferentiated cells. Gene ontology and pathway analyses suggested that many of the candidate genes were associated with neural events. Together with 66 genes whose functions in neural cells or organs were reported previously, 47 candidate genes were found to be linked to 189 events in the gene-level profile of neural differentiation. By text-mining for the alternative isoform, distinct functions of the isoforms of 9 candidate genes indicated by the result of Exon Array were confirmed. CONCLUSIONS/SIGNIFICANCE: Alternative exons were successfully extracted. Results from the informatics analyses suggested that neural events were primarily governed by genes whose expression was increased and whose transcripts were differentially alternatively spliced in the neuronal cells. In addition to known functions in neural cells or organs, the uninvestigated alternative splicing events of 11 genes among 47 candidate genes suggested that cell cycle events are also potentially important. These genes may help researchers to differentiate the roles of alternative splicing in cell differentiation and cell proliferation.


Assuntos
Processamento Alternativo/fisiologia , Diferenciação Celular/genética , Neurônios/metabolismo , Neurônios/fisiologia , Processamento Alternativo/genética , Proliferação de Células , Análise por Conglomerados , Éxons/genética , Éxons/fisiologia , Perfilação da Expressão Gênica , Redes Reguladoras de Genes , Humanos , Redes e Vias Metabólicas/genética , Análise em Microsséries , Modelos Biológicos , Neurogênese/genética , Neurogênese/fisiologia , Células Tumorais Cultivadas
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