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1.
FEMS Microbiol Lett ; 368(11)2021 06 16.
Artigo em Inglês | MEDLINE | ID: mdl-34036335

RESUMO

A freshwater dwelling cyanobacterium (strain MKW3) was isolated from a sample collected from a water logged sugarcane field located in Malkapur, Karad, Maharashtra, India, and was characterized using a polyphasic approach. In the 16S rRNA gene phylogenetic analysis, strain MKW3 clustered with two misidentified strains-Nostoc sp. CENA239 and Calothrix sp. NIES2100. The phylogenetically related members included strains identified as Nostoc, Aulosira, Calothrix, Tolypothrix, Camptylonemopsis and Microchaete. The phylogenetic and the morphological analysis of the strain MKW3 indicated that it does not belong to any of the above mentioned genera. Furthermore, the 16S-23S ITS secondary structure analysis provided clear evidence indicating that strain MKW3 is different from Nostoc sp. CENA239 and Calothrix sp. NIES2100. Based on the morphological, phylogenetic and 16S-23S ITS secondary structure analysis we describe our strain as Constrictifilum karadense gen. et sp. nov. in accordance with the International Code of Nomenclature for algae, fungi and plants.


Assuntos
Cianobactérias/classificação , Filogenia , Cianobactérias/citologia , Cianobactérias/genética , DNA Bacteriano/genética , DNA Espaçador Ribossômico/química , Água Doce/microbiologia , Índia , Conformação de Ácido Nucleico , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Especificidade da Espécie
2.
Int J Syst Evol Microbiol ; 70(8): 4714-4724, 2020 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-32730195

RESUMO

Cyanobacterial strain PS4G was isolated from seepage soil sampled at Pachmarhi, Madhya Pradesh, India, and was characterized using a polyphasic approach. The results of morphological analysis showed that strain PS4G had unique morphological characteristics which were not observed in the other described species of the genus Fortiea. In the 16S rRNA gene phylogenetic analysis inferred using Bayesian inference, maximum-likelihood and neighbour-joining methods, strain PS4G clustered within the clade consisting of the members of the genus Fortiea. Furthermore, in the secondary structure analysis using the D1-D1' helix and BoxB regions of 16S-23S ITS, strain PS4G showed marked differences in comparison with other members of the genus Fortiea. Overall, the morphological, phylogenetic and folded 16S-23S ITS secondary structure examination indicated that strain PS4G represents a novel species of the genus Fortiea. In accordance with the International Code of Nomenclature of Algae, Fungi and Plants we describe a novel species of Fortiea with the name Fortiea necridiiformans sp. nov.


Assuntos
Cianobactérias/classificação , Filogenia , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , Composição de Bases , Cianobactérias/isolamento & purificação , DNA Bacteriano/genética , Índia , Conformação de Ácido Nucleico , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
3.
Int J Syst Evol Microbiol ; 70(5): 3413-3426, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32375955

RESUMO

Five cyanobacterial strains with Nostoc-like morphology from different localities of the Mazandaran province of Iran were characterized using a polyphasic approach. Three strains clustered within the Aliinostoc clade whereas one each of the remaining two strains clustered within the genera Desmonostoc and Desikacharya. The phylogenetic positioning of all the strains by the bayesian inference, neighbour joining and maximum parsimony methods inferred using 16S rRNA gene indicated them to represent novel species of the genera Aliinostoc, Desmonostoc and Desikacharya. The 16S-23S ITS secondary structure analysis revealed that all five strains under study represented novel species unknown to science. In accordance with the International Code of Nomenclature for algae, fungi and plants we describe three novel species of the genus Aliinostoc and one species each of the genera Desmonostoc and Desikacharya.


Assuntos
Cianobactérias/classificação , Filogenia , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , Composição de Bases , Teorema de Bayes , Cianobactérias/isolamento & purificação , DNA Bacteriano/genética , Irã (Geográfico) , Conformação de Ácido Nucleico , Oryza , RNA Ribossômico 16S/genética , RNA Ribossômico 23S/genética , Análise de Sequência de DNA
4.
Int J Syst Evol Microbiol ; 70(4): 2740-2749, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-32223837

RESUMO

Cyanobacterial strain ARC8 was isolated from seepage coming into the river Dracice, Frantiskov, Czech Republic, and was characterized using a polyphasic approach. Strain ARC8 showed a typical Nostoc-like morphology and in-depth morphological characterization indicated that it is a member of the genus Nostoc. Furthermore, in the 16S rRNA gene phylogeny inferred using Bayesian inference, maximum likelihood and neighbour joining methods, strain ARC8 clustered within the Nostoc sensu stricto clade. The phylogenetic distance and the positioning of strain ARC8 also indicated that it is a member of the genus Nostoc. Furthermore, the rbcL gene phylogeny along with the 16S-23S ITS secondary structure analysis also supported the findings from the 16S rRNA gene tree. In accordance with the International Code of Nomenclature for Algae, Fungi and Plants we describe a novel species of Nostoc with the name Nostoc neudorfense sp. nov.


Assuntos
Nostoc/classificação , Filogenia , Rios/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , Teorema de Bayes , República Tcheca , DNA Bacteriano/genética , Nostoc/isolamento & purificação , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
5.
FEMS Microbiol Lett ; 367(5)2020 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-32166328

RESUMO

Soil inhabiting true branching heterocytous cyanobacterium strain SNS 3 with T-type branching was collected from the campus of Banaras Hindu University, India and characterized using the polyphasic approach. Morphological observations showed the presence of akinetes (in chain), hormogonia and monocytes. Physiological characterization of strain SNS 3 showed high content of carotenoid in comparison to chlorophyll a content along with also exhibiting a higher C/N ratio in the nitrogen deficient BG110 medium. 16S rRNA gene sequencing and subsequent phylogeny indicated strong clustering of the strain SNS 3 within the Westiellopsis clade. Folded secondary structures of the ITS region showed visible differences in the D1-D1' and BoxB helix of the strain SNS 3. The polyphasic approach indicated the strain SNS 3 as a new member of the genus Westiellopsis with the name proposed being Westiellopsis akinetica sp. nov. on the basis of the International Code of Nomenclature for Algae, Fungi and Plants. Intense phylogenetic evaluation of the entire true-branched heterocytous clade indicated the need for more revisionary attempts for demarcating the sensu stricto clades along with highlighting the scope for further taxonomic revisions in the future.


Assuntos
Cianobactérias/classificação , Filogenia , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , Cianobactérias/fisiologia , DNA Bacteriano/genética , Índia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
6.
FEMS Microbiol Lett ; 365(24)2018 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-30445500

RESUMO

Three heterocytous cyanobacterial strains were isolated from different habitats of Central India, and initial morphological studies indicated them to be members of the genus Nostoc or other closely related genera. Subsequent studies using morphological, ecological, molecular and phylogenetic methods indicated the three strains to be new members of the genera Aliinostoc and Desmonostoc. Folding of the D1-D1' helix of the ITS region clearly differentiated the three strains from the other closely related strains, thus providing final indications of the strains being different and new additions to the genera Aliinostoc and Desmonostoc. In accordance with the International Code of Nomenclature for algae, fungi and plants, we establish three new species: Aliinostoc tiwarii sp. nov, Aliinostoc soli sp. nov. and Desmonostoc magnisporum sp. nov. along with reclassifying Nostoc punensis as Desmonostoc punense comb. nov.


Assuntos
Cianobactérias/classificação , Nostoc/classificação , Técnicas de Tipagem Bacteriana , Cianobactérias/genética , Cianobactérias/isolamento & purificação , DNA Bacteriano/genética , Ecossistema , Água Doce/microbiologia , Índia , Nostoc/genética , Nostoc/isolamento & purificação , Filogenia
7.
FEMS Microbiol Lett ; 365(15)2018 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-29982333

RESUMO

A false branching cyanobacterium (strain 10A1_PS) was isolated from a freshwater body of the Pachmarhi Biosphere Reserve, India and was characterised using the polyphasic approach. The detailed morphological examination indicated that the strain belonged to the complex genus Scytonema as it exhibited typical false branching character whose frequency increased with age of the culture. As the family Scytonemataceae and the genus Scytonema has been shown to be polyphyletic in many studies, we provide deep insights into the phylogenetic complexities within the family Scytonemataceae based on 16S rRNA gene phylogeny along with complete morphological, molecular and phylogenetic characterisation of the strain. The 16S rRNA gene phylogenetic tree inferred by Bayesian Inference, Neighbor-Joining and Maximum Parsimony methods showed that the strain clustered within the Scytonema sensu stricto clade. The phylogenetic distance and the positioning of the strain clearly indicated it to be different from other Scytonema species. Further analysis using rbcL phylogeny, folded secondary structures of the 16S-23S ITS, p-distance and percentage pairwise similarity matrix clearly distinguished the strain 10A1_PS from the other closely related species. In accordance with the International Code of Nomenclature for Algae, Fungi and Plants, we propose the name of the new species to be Scytonema pachmarhiense.


Assuntos
Cianobactérias/classificação , Cianobactérias/isolamento & purificação , Água Doce/microbiologia , Filogenia , Cianobactérias/genética , DNA Bacteriano/genética , Índia , RNA Ribossômico 16S/genética , RNA Ribossômico 23S/genética , Recursos Hídricos
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