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1.
J Am Chem Soc ; 146(17): 11679-11693, 2024 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-38482849

RESUMO

Lipid nanoparticles (LNPs)-based messenger RNA (mRNA) therapeutics have emerged with promising potentials in the fields of infectious diseases, cancer vaccines, and protein replacement therapies; however, their therapeutic efficacy and safety can still be promoted by the optimization of LNPs formulations. Unfortunately, current LNPs suffer from increased production of reactive oxygen species during translation, which leads to a decreased translation efficiency and the onset of inflammation and other side effects. Herein, we synthesize a lipid-modified poly(guanidine thioctic acid) polymer to fabricate novel LNPs for mRNA vaccines. The acquired G-LNPs significantly promote the translation efficiency of loaded mRNA and attenuate inflammation after vaccination through the elimination of reactive oxygen species that are responsible for translational inhibition and inflammatory responses. In vivo studies demonstrate the excellent antitumor efficacy of the G-LNPs@mRNA vaccine, and two-dose vaccination dramatically increases the population and infiltration of cytotoxic T cells due to the intense antitumor immune responses, thus generating superior antitumor outcomes compared with the mRNA vaccine prepared from traditional LNPs. By synergy with immune checkpoint blockade, the tumor inhibition of G-LNPs@mRNA is further boosted, indicating that G-LNPs-based mRNA vaccines will be powerful and versatile platforms to combat cancer.


Assuntos
Vacinas Anticâncer , Lipídeos , Lipossomos , Nanopartículas , RNA Mensageiro , Vacinas Anticâncer/química , Vacinas Anticâncer/imunologia , Nanopartículas/química , Animais , Camundongos , RNA Mensageiro/genética , RNA Mensageiro/imunologia , Lipídeos/química , Humanos , Ácido Tióctico/química , Ácido Tióctico/farmacologia , Polímeros/química , Guanidinas/química , Guanidinas/farmacologia , Linhagem Celular Tumoral
2.
Sci Adv ; 10(10): eade6900, 2024 Mar 08.
Artigo em Inglês | MEDLINE | ID: mdl-38446877

RESUMO

The accumulation of self-renewed polarized microglia in the penumbra is a critical neuroinflammatory process after ischemic stroke, leading to secondary demyelination and neuronal loss. Although known to regulate tumor cell proliferation and neuroinflammation, HDAC3's role in microgliosis and microglial polarization remains unclear. We demonstrated that microglial HDAC3 knockout (HDAC3-miKO) ameliorated poststroke long-term functional and histological outcomes. RNA-seq analysis revealed mitosis as the primary process affected in HDAC3-deficent microglia following stroke. Notably, HDAC3-miKO specifically inhibited proliferation of proinflammatory microglia without affecting anti-inflammatory microglia, preventing microglial transition to a proinflammatory state. Moreover, ATAC-seq showed that HDAC3-miKO induced closing of accessible regions enriched with PU.1 motifs. Overexpressing microglial PU.1 via an AAV approach reversed HDAC3-miKO-induced proliferation inhibition and protective effects on ischemic stroke, indicating PU.1 as a downstream molecule that mediates HDAC3's effects on stroke. These findings uncovered that HDAC3/PU.1 axis, which mediated differential proliferation-related reprogramming in different microglia populations, drove poststroke inflammatory state transition, and contributed to pathophysiology of ischemic stroke.


Assuntos
AVC Isquêmico , Acidente Vascular Cerebral , Microglia , Acidente Vascular Cerebral/genética , Proliferação de Células , Sementes
3.
Adv Mater ; : e2311574, 2024 Mar 03.
Artigo em Inglês | MEDLINE | ID: mdl-38433564

RESUMO

Dendritic cell (DC) maturation is a crucial process for antigen presentation and the initiation of T cell-mediated immune responses. Toll-like receptors play pivotal roles in stimulating DC maturation and promoting antigen presentation. Here, a novel message RNA (mRNA) cancer vaccine is reported that boosts antitumor efficacy by codelivering an mRNA encoding tumor antigen and a TLR7/8 agonist (R848) to DC using supramolecular lipid nanoparticles (SMLNP) as a delivery platform, in which a new ionizable lipid (N2-3L) remarkably enhances the translation efficiency of mRNA and a ß-cyclodextrin (ß-CD)-modified ionizable lipid (Lip-CD) encapsulates R848. The incorporation of R848 adjuvant into the mRNA vaccine through noncovalent host-guest complexation significantly promotes DC maturation and antigen presentation after vaccination, thus resulting in superior antitumor efficacy in vivo. Moreover, the antitumor efficacy is further boosted synergized with immune checkpoint blockade by potentiating the anticancer capability of cytotoxic T lymphocytes infiltrated in tumor sites. This work indicates that SMLNP shows brilliant potential as next-generation delivery system in the development of mRNA vaccines with high efficacy.

4.
Angew Chem Int Ed Engl ; 63(13): e202318515, 2024 Mar 22.
Artigo em Inglês | MEDLINE | ID: mdl-38320193

RESUMO

Insufficient accumulation of lipid nanoparticles (LNPs)-based mRNA vaccines in antigen presenting cells remains a key barrier to eliciting potent antitumor immune responses. Herein, we develop dendritic cells (DCs) targeting LNPs by taking advantage of mannose receptor-mediated endocytosis. Efficient delivery of mRNA to DCs is achieved in vitro and in vivo utilizing the sweet LNPs (STLNPs-Man). Intramuscular injection of mRNA vaccine (STLNPs-Man@mRNAOVA ) results in a four-fold higher uptake by DCs in comparison with commercially used LNPs. Benefiting from its DCs targeting ability, STLNPs-Man@mRNAOVA significantly promotes the antitumor performances, showing a comparable therapeutic efficacy by using one-fifth of the injection dosage as the vaccine prepared from normal LNPs, thus remarkably avoiding the side effects brought by conventional mRNA vaccines. More intriguingly, STLNPs-Man@mRNAOVA exhibits the ability to downregulate the expression of cytotoxic T-lymphocyte-associated protein 4 on T cells due to the blockade of CD206/CD45 axis, showing brilliant potentials in promoting antitumor efficacy combined with immune checkpoint blockade therapy.


Assuntos
Vacinas Anticâncer , Lipossomos , Nanopartículas , Neoplasias , Humanos , Apresentação de Antígeno , Vacinas de mRNA , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Células Dendríticas/metabolismo , Neoplasias/terapia , Neoplasias/metabolismo
5.
Altern Ther Health Med ; 29(8): 608-612, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37678862

RESUMO

Objective: To identify messenger RNAs (mRNAs) with differential expression in allergic rhinitis (AR) based on an online database, Gene Expression Omnibus (GEO), to provide a new research direction for future diagnosis and treatment of AR. Methods: The GSE44037 dataset from the CEO database was selected to obtain differentially expressed mRNAs (DEmRNAs) in AR. The keywords involved in these DEmRNAs were enriched and analyzed, and ECM1 and CCL2 were selected for subsequent analysis. In addition, BALB/c mice were purchased and randomized to control (normal feeding), model (AR modeling), si-CCL2 (AR modeling + CCL2 suppression by lentivirus vector), nc-CCL2 (AR modeling + CCL2 empty vector), si-ECM1 (AR modeling + ECM1 suppression by lentivirus vector), and nc-ECM1 (AR modeling + ECM1 empty vector) groups. The frequencies of sneezing and nasal rubbing were recorded in each group. Besides, levels of CCL2, ECM1, interleukin (IL)-6, IL-8, tumor necrosis factor (TNF)-α, and high sensitivity C-reactive protein (hs-CRP) were quantified, and the inflammatory infiltration of nasal mucosa (NM) was observed. Results: Twenty-six DEmRNAs were acquired from the GSE44037 dataset, among which only CCL2 and ECM1 were found to be associated with keywords such as "immune response" and "inflammatory response" through enrichment analysis. In animal experiments, CCL2 presented lower mRNA expression in model mice than in control mice, while ECM1 showed higher mRNA expression (P < .05). The frequencies of sneezing and nose rubbing and the levels of inflammatory factors were significantly increased in si-CCL2 mice compared with model mice, while were significantly decreased in si-ECM1 mice (P < .05). The NM inflammatory infiltration was serious in the si-CCL2 group and significantly improved in the si-ECM1 group. Conclusions: Low expression of CCL2 and high expression of ECM1 in AR are strongly linked to the pathological progression of AR, and these two genes are expected to be new research directions for AR diagnosis and treatment.


Assuntos
Rinite Alérgica , Espirro , Animais , Camundongos , Modelos Animais de Doenças , Camundongos Endogâmicos BALB C , Mucosa Nasal/metabolismo , Mucosa Nasal/patologia , Rinite Alérgica/genética , RNA Mensageiro/farmacologia
6.
Heliyon ; 9(3): e13835, 2023 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-36895368

RESUMO

Due to the advantageous characteristics of laser welding technology, it is being increasingly used for constructing stainless steel rail vehicles. It can improve the appearance of a vehicle, enable designs with a relatively high degree of flatness, and ensure higher-quality connections between different parts of a vehicle. Moreover, it can improve the strength and stiffness of the components of the vehicle. In this study, a large-scale assembly module of a stainless steel side-wall was considered as the research object. The combined heat source model of a Gaussian heat source and a cylindrical volume heat source was used to obtain the heat source parameters of laser welding to match the experimental data. Based on the thermal cycle curve method (TCCM), the influence of the number of weld segments and mesh divisions of the local model on the efficiency and accuracy of laser welding simulations was investigated. Thereafter, the research results were applied to the welding simulation of the whole side-wall module. The shape of the molten pool obtained using the combined heat source was closer to that of the experiments (error < 10%), demonstrating the accuracy and effectiveness of the developed the heat source model for laser welding simulation. For local model laser welding using the TCCM, a coarse mesh was used, and the weld was divided into four segments, and highly accurate results were obtained. This calculation time was only 5.97% of that of a moving heat source in case of the thermo-elastic-plastic method (TEPM). Residual stress and welding deformation of the stainless steel side-wall module were calculated according to actual process parameters and the results of local model simulation. Residual stress was discontinuously distributed at the weld segments, and it only slightly influenced the overall stress distribution. The maximum residual stress (462.15 MPa) occurred at the weld of the large crossbeam. Welding eight small and two large crossbeams influenced the deformation change and the maximum deformation (1.26 mm) appeared in the middle position of the left side-wall. The findings of this study show that the TCCM has high calculation accuracy and is sufficiently economical for predicting laser welding of large structures.

7.
Materials (Basel) ; 15(16)2022 Aug 11.
Artigo em Inglês | MEDLINE | ID: mdl-36013651

RESUMO

The melting and solidification process of S32101 duplex stainless steel (DSS) was investigated using high-temperature confocal microscopy (HTCM). The method of concentric HTCM was employed to study microstructure evolution during the solidification process of S32101 DSS. This method could artificially create a meniscus-shaped solid-liquid interface, which dramatically improved the quality of in situ observations. During the heating stage, γ-austenite transformed to δ-ferrite, and this transformation manifested itself in the form of grain boundaries (GBs) moving. The effects of cooling rate on the solidification pattern and microstructure were revealed in the present research. An enhanced cooling rate led to a finer microstructure, and the solidification pattern changed from cellular to dendritic growth. As the temperature decreased, the commencement and growth of precipitates were observed. In this paper, the experimental data, including parameters such as temperature, cooling rate, and growth mode, were used as the benchmark for the simulation. A simulation framework using Micress linked to a 1D heat transfer model enabling consistent analysis of solidification dynamics in DSS across the whole cast slab was established. Simulating the dendrite growth and elemental segregation of DSS at specific cooling rates shows that this framework can be a powerful tool for solving practical production problems.

8.
Food Res Int ; 156: 111282, 2022 06.
Artigo em Inglês | MEDLINE | ID: mdl-35651054

RESUMO

Gallic acid (GA) and green tea extract (GT) could retard the self-degradation of ready-to-eat sea cucumber (RSC). The physical and chemical properties of RSC were changed after cross-linking. Cross-linkers could retard the conversion of α-helix like structure to random coil. Besides, the peptides of cross-linked RSC were easily broken at the sites of G, E, A, L, S, H, Y, V and I after stored for 30 d. The self-degradation rate of RSC before and after cross-linking was determined by synthetic typical peptides. After cross-linked by GA, the relative peak heights of NQ, NL and GLQ increased by 20.59%, 11.14% and 31.49%, indicating that GA could effectively retard the degradation of the peptides during storage. Moreover, hydrogen bond was confirmed as the main force to maintain the stability of RSC body wall before and after cross-linking.


Assuntos
Produtos Biológicos , Pepinos-do-Mar , Animais , Antioxidantes/química , Ácido Gálico , Peptídeos , Extratos Vegetais/química , Chá/química
9.
CNS Neurosci Ther ; 28(9): 1279-1293, 2022 09.
Artigo em Inglês | MEDLINE | ID: mdl-35751629

RESUMO

AIMS: Phagocytosis is the cellular digestion of extracellular particles, such as pathogens and dying cells, and is a key element in the evolution of central nervous system (CNS) disorders. Microglia and macrophages are the professional phagocytes of the CNS. By clearing toxic cellular debris and reshaping the extracellular matrix, microglia/macrophages help pilot the brain repair and functional recovery process. However, CNS resident and invading immune cells can also magnify tissue damage by igniting runaway inflammation and phagocytosing stressed-but viable-neurons. DISCUSSION: Microglia/macrophages help mediate intercellular communication and react quickly to the "find-me" signals expressed by dead/dying neurons. The activated microglia/macrophages then migrate to the injury site to initiate the phagocytic process upon encountering "eat-me" signals on the surfaces of endangered cells. Thus, healthy cells attempt to avoid inappropriate engulfment by expressing "do not-eat-me" signals. Microglia/macrophages also have the capacity to phagocytose immune cells that invade the injured brain (e.g., neutrophils) and to regulate their pro-inflammatory properties. During brain recovery, microglia/macrophages engulf myelin debris, initiate synaptogenesis and neurogenesis, and sculpt a favorable extracellular matrix to support network rewiring, among other favorable roles. Here, we review the multilayered nature of phagocytotic microglia/macrophages, including the molecular and cellular mechanisms that govern microglia/macrophage-induced phagocytosis in acute brain injury, and discuss strategies that tap into the therapeutic potential of this engulfment process. CONCLUSION: Identification of biological targets that can temper neuroinflammation after brain injury without hindering the essential phagocytic functions of microglia/macrophages will expedite better medical management of the stroke recovery stage.


Assuntos
Lesões Encefálicas , Doenças do Sistema Nervoso Central , Encéfalo , Humanos , Macrófagos/fisiologia , Microglia/fisiologia , Fagócitos , Fagocitose
10.
J Cereb Blood Flow Metab ; 42(3): 495-509, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-32312170

RESUMO

The embolic middle cerebral artery occlusion (eMCAO) model mimics ischemic stroke due to large vessel occlusion in humans and is amenable to thrombolytic therapy with rtPA. However, two major obstacles, the difficulty of the eMCAO surgery and unpredictable occurrence of clot autolysis, had impeded its application in mice. In this study, we modified catheters to produce suitable fibrin-rich embolus and optimized the eMCAO model using cerebral blood flow (CBF) monitored by both laser Doppler flowmetry (LDF) and 2D laser speckle contrast imaging (LSCI) to confirm occlusion of MCA. The results showed that longer embolus resulted in higher mortality. There was a compensatory increase in MCA territory perfusion after eMCAO associated with decreased infarct volume; however, this was only partly dependent on recanalization as clot autolysis was only observed in ∼30% of mice. Cortical CBF monitoring with LSCI showed that the size of peri-core area at 3 h displayed the best correlation with infarct volume that is attributed to compensatory collateral blood flow. The peri-core area best predicted functional outcome after eMCAO. In summary, we developed a reliable eMCAO mouse model that better mimics embolic ischemic stroke in humans, which will increase the potential for successful translation of stroke neuroprotective therapies.


Assuntos
Circulação Cerebrovascular , Modelos Animais de Doenças , Infarto da Artéria Cerebral Média/patologia , Animais , AVC Isquêmico/patologia , Masculino , Camundongos , Camundongos Endogâmicos C57BL
11.
Autophagy ; 17(11): 3592-3606, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-33629929

RESUMO

Glioma is the most common primary malignant brain tumor with poor survival and limited therapeutic options. The non-psychoactive phytocannabinoid cannabidiol (CBD) has been shown to be effective against glioma; however, the molecular target and mechanism of action of CBD in glioma are poorly understood. Here we investigated the molecular mechanisms underlying the antitumor effect of CBD in preclinical models of human glioma. Our results showed that CBD induced autophagic rather than apoptotic cell death in glioma cells. We also showed that CBD induced mitochondrial dysfunction and lethal mitophagy arrest, leading to autophagic cell death. Mechanistically, calcium flux induced by CBD through TRPV4 (transient receptor potential cation channel subfamily V member 4) activation played a key role in mitophagy initiation. We further confirmed TRPV4 levels correlated with both tumor grade and poor survival in glioma patients. Transcriptome analysis and other results demonstrated that ER stress and the ATF4-DDIT3-TRIB3-AKT-MTOR axis downstream of TRPV4 were involved in CBD-induced mitophagy in glioma cells. Lastly, CBD and temozolomide combination therapy in patient-derived neurosphere cultures and mouse orthotopic models showed significant synergistic effect in both controlling tumor size and improving survival. Altogether, these findings showed for the first time that the antitumor effect of CBD in glioma is caused by lethal mitophagy and identified TRPV4 as a molecular target and potential biomarker of CBD in glioma. Given the low toxicity and high tolerability of CBD, we therefore propose CBD should be tested clinically for glioma, both alone and in combination with temozolomide.Abbreviations: 4-PBA: 4-phenylbutyrate; AKT: AKT serine/threonine kinase; ATF4: activating transcription factor 4; Baf-A1: bafilomycin A1; CANX: calnexin; CASP3: caspase 3; CAT: catalase; CBD: cannabidiol; CQ: chloroquine; DDIT3: DNA damage inducible transcript 3; ER: endoplasmic reticulum; GBM: glioblastoma multiforme; GFP: green fluorescent protein; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; MTOR: mechanistic target of rapamycin kinase; PARP1: poly(ADP-ribose) polymerase; PINK1: PTEN induced kinase 1; PRKN: parkin RBR E3 ubiquitin protein ligase; SLC8A1: solute carrier family 8 member A1; SQSTM1: sequestosome 1; TCGA: The cancer genome atlas; TEM: transmission electron microscopy; TMZ: temozolomide; TRIB3: tribbles pseudokinase 3; TRPC: transient receptor potential cation channel subfamily C; TRPV4: transient receptor potential cation channel subfamily V member 4.


Assuntos
Canabidiol/uso terapêutico , Glioma/tratamento farmacológico , Mitofagia/efeitos dos fármacos , Canais de Cátion TRPV/metabolismo , Animais , Antineoplásicos Alquilantes/farmacologia , Morte Celular Autofágica/efeitos dos fármacos , Biomarcadores Tumorais/metabolismo , Canabidiol/farmacologia , Linhagem Celular Tumoral , Glioma/metabolismo , Glioma/patologia , Humanos , Masculino , Camundongos , Camundongos Nus , Mitocôndrias/efeitos dos fármacos , Mitocôndrias/metabolismo , Transplante de Neoplasias , Canais de Cátion TRPV/fisiologia , Temozolomida/farmacologia
12.
CNS Neurosci Ther ; 25(6): 734-747, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30689302

RESUMO

AIMS: Neonatal hypoxia-ischemia (H/I) results in gray and white matter injury, characterized by neuronal loss, failure of neural network formation, retarded myelin formation, and abnormal accumulation of oligodendrocyte progenitor cells (OPCs). These changes lead to severe neurological deficits and mortality. Sublethal hypoxic preconditioning (HPC) can protect the developing brain against H/I. However, limited evidence is available concerning its effect on white matter injury. METHODS: In this study, P6 neonatal Sprague-Dawley rats were subjected to normoxic (21% O2 ) or HPC (7.8% O2 ) for 3 hours followed 24 hours later by H/I brain injury. Neurological deficits were assessed by gait, righting reflex, foot fault, and Morris water maze tests. Compound action potential of the corpus callosum was recorded 35 days after surgery, and the correlation between axon myelination and neurological function was determined. RESULTS: Hypoxic preconditioning significantly attenuated H/I brain injury at 7 days and remarkably improved both sensorimotor and cognitive functional performances up to 35 days after H/I. HPC-afforded improvement in long-term neurological outcomes was attributable, at least in part, to restoration of the differentiation and maturation capacity in oligodendrocyte progenitor cells, amelioration of microglia/macrophage activation and neuroinflammation, and continuation of brain development after H/I. CONCLUSIONS: Hypoxic preconditioning restores white matter repair, development, and functional integrity in developing brain after H/I brain injury.


Assuntos
Encéfalo/crescimento & desenvolvimento , Hipóxia-Isquemia Encefálica/terapia , Substância Branca/crescimento & desenvolvimento , Animais , Animais Recém-Nascidos , Atrofia , Encéfalo/patologia , Encéfalo/fisiopatologia , Citocinas/metabolismo , Modelos Animais de Doenças , Hipóxia-Isquemia Encefálica/patologia , Hipóxia-Isquemia Encefálica/fisiopatologia , Macrófagos/patologia , Macrófagos/fisiologia , Microglia/patologia , Microglia/fisiologia , Bainha de Mielina/patologia , Oxigênio/administração & dosagem , Distribuição Aleatória , Ratos Sprague-Dawley , Técnicas de Cultura de Tecidos , Substância Branca/patologia , Substância Branca/fisiopatologia
13.
Fish Shellfish Immunol ; 80: 141-147, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-29879509

RESUMO

Cathepsin F is a unique papain cysteine proteinase with highly conserved structures: catalytic triad and a cystatin domain contained in the elongated N-terminal pro-region. It has been reported that cathepsin F is associated with the establishment of innate immune in several vertebrate including fish in aquaculture, but not known in bivalves. In this study, we firstly identified and characterized cathepsin F in the Yesso scallop (Patinopecten yessoensis). The protein structural and phylogenetic analyses were then conducted to determine its identity and evolutionary position. We've also investigated the expression levels of cathepsin F gene at different embryonic developmental stages, in healthy adult tissues and especially in the hemocytes and hepatopancreas after Gram-positive (Micrococcus luteus) and negative (Vibrio anguillarum) challenges using quantitative real-time PCR (qPCR). Cathepsin F was significantly up-regulated 3 h after infection of V. anguillarum in hemocytes, suggesting its participation in immune response. Our findings have provided strong evidence that cathepsin F may be a good target for enhancing the immune activity in Yesso scallop.


Assuntos
Catepsina F , Infecções por Bactérias Gram-Positivas/imunologia , Pectinidae/genética , Pectinidae/imunologia , Vibrioses/imunologia , Sequência de Aminoácidos , Animais , Catepsina F/química , Catepsina F/genética , Catepsina F/imunologia , Infecções por Bactérias Gram-Positivas/veterinária , Hemócitos/imunologia , Hepatopâncreas/imunologia , Micrococcus luteus , Filogenia , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , RNA Mensageiro/genética , Vibrio , Vibrioses/veterinária
14.
Sci Rep ; 6: 34420, 2016 Sep 28.
Artigo em Inglês | MEDLINE | ID: mdl-27677461

RESUMO

Single-cell sequencing is useful for illustrating the cellular heterogeneities inherent in many intricate biological systems, particularly in human cancer. However, owing to the difficulties in acquiring, amplifying and analyzing single-cell genetic material, obstacles remain for single-cell diversity assessments such as single nucleotide polymorphism (SNP) analyses, rendering biological interpretations of single-cell omics data elusive. We used RNA-Seq data from single-cell and bulk colon cancer samples to analyze the SNP profiles for both structural and functional comparisons. Colon cancer-related pathways with single-cell level SNP enrichment, including the TGF-ß and p53 signaling pathways, were also investigated based on both their SNP enrichment patterns and gene expression. We also detected a certain number of fusion transcripts, which may promote tumorigenesis, at the single-cell level. Based on these results, single-cell analyses not only recapitulated the SNP analysis results from the bulk samples but also detected cell-to-cell and cell-to-bulk variations, thereby aiding in early diagnosis and in identifying the precise mechanisms underlying cancers at the single-cell level.

15.
Sci Rep ; 5: 14852, 2015 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-26439740

RESUMO

Genetic linkage maps are critical and indispensable tools in a wide range of genetic and genomic research. With the advancement of genotyping-by-sequencing (GBS) methods, the construction of a high-density and high-resolution linkage maps has become achievable in marine organisms lacking sufficient genomic resources, such as echinoderms. In this study, high-density, high-resolution genetic map was constructed for a sea cucumber species, Apostichopus japonicus, utilizing the 2b-restriction site-associated DNA (2b-RAD) method. A total of 7839 markers were anchored to the linkage map with the map coverage of 99.57%, to our knowledge, this is the highest marker density among echinoderm species. QTL mapping and association analysis consistently captured one growth-related QTL located in a 5 cM region of linkage group (LG) 5. An annotated candidate gene, retinoblastoma-binding protein 5 (RbBP5), which has been reported to be an important regulator of cell proliferation, was recognized in the QTL region. This linkage map represents a powerful tool for research involving both fine-scale QTL mapping and marker assisted selection (MAS), and will facilitate chromosome assignment and improve the whole-genome assembly of sea cucumber in the future.


Assuntos
Mapeamento Cromossômico , Ligação Genética , Locos de Características Quantitativas , Pepinos-do-Mar/genética , Animais , Genômica/métodos , Genótipo , Repetições de Microssatélites , Polimorfismo de Nucleotídeo Único/genética
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