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1.
Plant Cell Physiol ; 65(7): 1173-1183, 2024 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-38619117

RESUMO

Verticillium dahliae is a kind of pathogenic fungus that brings about wilt disease and great losses in cotton. The molecular mechanism of the effectors in V. dahliae regulating cotton immunity remains largely unknown. Here, we identified an effector of V. dahliae, VdPHB1, whose gene expression is highly induced by infection. The VdPHB1 protein is localized to the intercellular space of cotton plants. Knock-out of the VdPHB1 gene in V. dahliae had no effect on pathogen growth, but decreased the virulence in cotton. VdPHB1 ectopically expressed Arabidopsis plants were growth-inhibited and significantly susceptible to V. dahliae. Further, VdPHB1 interacted with the type II metacaspase GhMC4. GhMC4 gene-silenced cotton plants were more sensitive to V. dahliae with reduced expression of pathogen defense-related and programmed cell death genes. The accumulation of GhMC4 protein was concurrently repressed when VdPHB1 protein was expressed during infection. In summary, these results have revealed a novel molecular mechanism of virulence regulation that the secreted effector VdPHB1 represses the activity of cysteine protease for helping V. dahliae infection in cotton.


Assuntos
Ascomicetos , Gossypium , Doenças das Plantas , Gossypium/microbiologia , Gossypium/genética , Doenças das Plantas/microbiologia , Doenças das Plantas/imunologia , Ascomicetos/patogenicidade , Ascomicetos/fisiologia , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Virulência , Proteínas de Plantas/metabolismo , Proteínas de Plantas/genética , Arabidopsis/microbiologia , Arabidopsis/genética , Arabidopsis/imunologia , Arabidopsis/metabolismo , Regulação da Expressão Gênica de Plantas , Interações Hospedeiro-Patógeno , Plantas Geneticamente Modificadas , Verticillium
2.
Plant Biotechnol J ; 21(11): 2374-2388, 2023 11.
Artigo em Inglês | MEDLINE | ID: mdl-37596974

RESUMO

Ethylene plays an essential role in the development of cotton fibres. Ethylene biosynthesis in plants is elaborately regulated by the activities of key enzymes, 1-aminocyclopropane-1-carboxylate oxidase (ACO) and 1-aminocyclopropane-1-carboxylate synthase (ACS); however, the potential mechanism of post-translational modification of ACO and ACS to control ethylene synthesis in cotton fibres remains unclear. Here, we identify an E3 ubiquitin ligase, GhXB38D, that regulates ethylene biosynthesis during fibre elongation in cotton. GhXB38D gene is highly expressed in cotton fibres during the rapid elongation stage. Suppressing GhXB38D expression in cotton significantly enhanced fibre elongation and length, accompanied by the up-regulation of genes associated with ethylene signalling and fibre elongation. We demonstrated that GhXB38D interacts with the ethylene biosynthesis enzymes GhACS4 and GhACO1 in elongating fibres and specifically mediates their ubiquitination and degradation. The inhibition of GhXB38D gene expression increased the stability of GhACS4 and GhACO1 proteins in cotton fibres and ovules, resulting in an elevated concentration of ethylene. Our findings highlight the role of GhXB38D as a regulator of ethylene synthesis by ubiquitinating ACS4 and ACO1 proteins and modulating their stability. GhXB38D acts as a negative regulator of fibre elongation and serves as a potential target for enhancing cotton fibre yield and quality through gene editing strategy.


Assuntos
Fibra de Algodão , Etilenos , Ubiquitina-Proteína Ligases/genética , Ubiquitinação , Regulação da Expressão Gênica de Plantas , Gossypium/genética
3.
Appl Environ Microbiol ; 88(11): e0003822, 2022 06 14.
Artigo em Inglês | MEDLINE | ID: mdl-35575549

RESUMO

Reactive oxygen species (ROS) can cause destructive damage to biological macromolecules and protein dysfunction in bacteria. Methionine sulfoxide reductase (Msr) with redox-active Cys and/or seleno-cysteine (Sec) residues can restore physiological functions of the proteome, which is essential for oxidative stress tolerance of the extremophile Deinococcus radiodurans. However, the underlying mechanism regulating MsrA enzyme activity in D. radiodurans under oxidative stress has remained elusive. Here, we identified the function of MsrA in response to oxidative stress. msrA expression in D. radiodurans was significantly upregulated under oxidative stress. The msrA mutant showed a deficiency in antioxidative capacity and an increased level of dabsyl-Met-S-SO, indicating increased sensitivity to oxidative stress. Moreover, msrA mRNA was posttranscriptionally regulated by a small RNA, DsrO. Analysis of the molecular interaction between DsrO and msrA mRNA demonstrated that DsrO increased the half-life of msrA mRNA and then upregulated MsrA enzyme activity under oxidative stress compared to the wild type. msrA expression was also transcriptionally regulated by the DNA-repairing regulator DrRRA, providing a connection for further analysis of protein restoration during DNA repair. Overall, our results provide direct evidence that DsrO and DrRRA regulate msrA expression at two levels to stabilize msrA mRNA and increase MsrA protein levels, revealing the protective roles of DsrO signaling in D. radiodurans against oxidative stress. IMPORTANCE The repair of oxidized proteins is an indispensable function allowing the extremophile D. radiodurans to grow in adverse environments. Msr proteins and various oxidoreductases can reduce oxidized Cys and Met amino acid residues of damaged proteins to recover protein function. Consequently, it is important to investigate the molecular mechanism maintaining the high reducing activity of MsrA protein in D. radiodurans during stresses. Here, we showed the protective roles of an sRNA, DsrO, in D. radiodurans against oxidative stress. DsrO interacts with msrA mRNA to improve msrA mRNA stability, and this increases the amount of MsrA protein. In addition, we also showed that DrRRA transcriptionally regulated msrA gene expression. Due to the importance of DrRRA in regulating DNA repair, this study provides a clue for further analysis of MsrA activity during DNA repair. This study indicates that protecting proteins from oxidation is an effective strategy for extremophiles to adapt to stress conditions.


Assuntos
Deinococcus , Metionina Sulfóxido Redutases , Deinococcus/genética , Deinococcus/metabolismo , Metionina/metabolismo , Metionina Sulfóxido Redutases/genética , Metionina Sulfóxido Redutases/metabolismo , Estresse Oxidativo/fisiologia , RNA/metabolismo , RNA Mensageiro/metabolismo
4.
Plant Sci ; 286: 7-16, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31300144

RESUMO

Cotton fibers are developed epidermal cells of the seed coat and contain large amounts of cellulose and minor lignin-like components. Lignin in the cell walls of cotton fibers effectively provides mechanical strength and is also presumed to restrict fiber elongation and secondary cell wall synthesis. To analyze the effect of lignin and lignin-like phenolics on fiber quality and the transcriptional regulation of lignin synthesis in cotton fibers, we characterized the function of a bHLH transcription factor, GhbHLH18, during fiber elongation stage. GhbHLH18 knock-down plants have longer and stronger fibers, and accumulate less lignin-like phenolics in mature cotton fibers than control plants. By mining public transcriptomic data for developing fibers, we discovered that GhbHLH18 is coexpressed with most lignin synthesis pathway genes. Furthermore, we showed that GhbHLH18 strongly binds to the E-box in the promoter region of GhPER8 and activates its expression. Transient over expression of GhPER8 protein in tobacco leaves significantly decreased the content of coniferyl alcohol and sinapic alcohol-the substrate respectively for G-lignin and S-lignin biosynthesis. These results suggest that GhbHLH18 is negatively associated with fiber quality by activating peroxidase-mediated lignin metabolism, thus the paper represents an alternative strategy to improve fiber quality.


Assuntos
Fibra de Algodão/análise , Gossypium/genética , Lignina/biossíntese , Proteínas de Plantas/genética , Fatores de Transcrição/genética , Perfilação da Expressão Gênica , Regulação da Expressão Gênica , Gossypium/metabolismo , Proteínas de Plantas/metabolismo , Fatores de Transcrição/metabolismo
5.
Sci Rep ; 6: 26829, 2016 06 17.
Artigo em Inglês | MEDLINE | ID: mdl-27311358

RESUMO

The cotton fibers are seed trichomes that elongate from the ovule epidermis. Polar lipids are required for the quick enlargement of cell membrane and fiber cell growth, however, how lipids are transported from the ovules into the developing fibers remains less known. Here, we reported the functional characterization of GhLTPG1, a GPI-anchored lipid transport protein, during cotton fiber elongation. GhLTPG1 was abundantly expressed in elongating cotton fibers and outer integument of the ovules, and GhLTPG1 protein was located on cell membrane. Biochemical analysis showed that GhLTPG1 specifically bound to phosphatidylinositol mono-phosphates (PtdIns3P, PtdIns4P and PtdIns5P) in vitro and transported PtdInsPs from the synthesis places to the plasma membranes in vivo. Expression of GhLTPG1 in Arabidopsis caused an increased number of trichomes, and fibers in GhLTPG1-knockdown cotton plants exhibited significantly reduced length, decreased polar lipid content, and repression of fiber elongation-related genes expression. These results suggested that GhLTPG1 protein regulates the cotton fiber elongation through mediating the transport of phosphatidylinositol monophosphates.


Assuntos
Antígenos de Plantas/fisiologia , Proteínas de Transporte/fisiologia , Fibra de Algodão , Gossypium/metabolismo , Lipídeos de Membrana/metabolismo , Proteínas de Membrana/fisiologia , Fosfatos de Fosfatidilinositol/metabolismo , Proteínas de Plantas/fisiologia , Tricomas/crescimento & desenvolvimento , Arabidopsis/crescimento & desenvolvimento , Transporte Biológico , Regulação da Expressão Gênica de Plantas , Genes Reporter , Gossypium/genética , Gossypium/crescimento & desenvolvimento , Lipossomos , Óvulo Vegetal/crescimento & desenvolvimento , Óvulo Vegetal/metabolismo , Óvulo Vegetal/ultraestrutura , Estruturas Vegetais/metabolismo , Ligação Proteica , RNA Mensageiro/biossíntese , RNA Mensageiro/genética , RNA de Plantas/biossíntese , RNA de Plantas/genética , Proteínas Recombinantes de Fusão/metabolismo , Especificidade da Espécie , Tricomas/metabolismo
6.
Mol Biol Rep ; 38(4): 2329-36, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21069464

RESUMO

MYB family transcription factors are implicated in multiple developmental processes. Herein, a new full-length cDNA encoding a SANT/MYB transcription factor (designated as GbRL2) was cloned and characterized from cotton (Gossypium barbadense L.) for the first time. The full-length cDNA of GbRL2 was 573 bp with a 240 bp open reading frame (ORF) encoding a deduced protein of 80 amino acid polypeptide with a calculated molecular mass of 8.96 kDa and an isoelectric point of 8.96. Sequence alignment revealed that GbRL2 had high homology with other single SANT/MYB domain containing genes, including the RADIALIS genes in Antirrhinum majus and Bournea leiophylla. Semi-quantitative reverse transcript polymerase chain reaction (RT-PCR) revealed that at seedling stage, GbRL2 was strongly expressed in leaves but merely in stems. In opening flowers, the expression of GbRL2 was moderate in the petals but could not be detected in stamens. In ovules, the expression of GbRL2 could not be detected at -3 days post-anthesis (DPA) but increased during early elongation stage (0 DPA, +3 DPA, +5 DPA and +8 DPA). The transcripts of GbRL2 could also be detected at +8 DPA elongating fibers. We also examined the expression of RL2 gene in Gossypium hirstum cultivar Xu-142 and its fuzzless-lintless-seed mutant fl plants. The GhRL2 gene was ectopically expressed at -3 DPA in the fl mutant while the expression of GhRL2 in WT could not be detected. The expression of GhRL2 decreased early (+5 DPA) while that of WT was still strong. Our results suggest that GbRL2 may participate in development of various organs and may be a target for genetic improvement of cotton fiber.


Assuntos
Gossypium/genética , Fatores de Transcrição/genética , Fatores Etários , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , Biologia Computacional , Primers do DNA/genética , DNA Complementar/genética , Perfilação da Expressão Gênica , Dados de Sequência Molecular , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Alinhamento de Sequência , Análise de Sequência de DNA
7.
Acta Biochim Pol ; 57(3): 305-11, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20931089

RESUMO

A lipase gene SR1 encoding an extracellular lipase was isolated from oil-contaminated soil and expressed in Escherichia coli. The gene contained a 1845-bp reading frame and encoded a 615-amino-acid lipase protein. The mature part of the lipase was expressed with an N-terminal histidine tag in E. coli BL21, purified and characterized biochemically. The results showed that the purified lipase combines the properties of Pseudomonas chlororaphis and other Serratia lipases characterized so far. Its optimum pH and temperature for hydrolysis activity was pH 5.5-8.0 and 37°C respectively. The enzyme showed high preference for short chain substrates (556.3±2.8 U/µg for C10 fatty acid oil) and surprisingly it also displayed high activity for long-chain fatty acid. The deduced lipase SR1 protein is probably from Serratia, and is organized as a prepro-protein and belongs to the GXSXG lipase family.


Assuntos
Lipase/química , Lipase/metabolismo , Óleos/química , Solo/química , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , Escherichia coli/genética , Escherichia coli/metabolismo , Concentração de Íons de Hidrogênio , Hidrólise , Lipase/genética , Dados de Sequência Molecular , Alinhamento de Sequência , Serratia/enzimologia , Microbiologia do Solo , Especificidade por Substrato
8.
J Plant Physiol ; 165(2): 203-13, 2008 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17257708

RESUMO

As the second enzyme of the non-mevalonate terpenoid pathway for isopentenyl diphosphate biosynthesis, DXP reductoisomerase (DXR, EC: 1.1.1.267) catalyzes a committed step of the MEP pathway for camptothecin (CPT) biosynthesis. In order to understand more about the role of DXR involved in the CPT biosynthesis at the molecular level, the full-length DXR cDNA sequence (designated as CaDXR) was isolated and characterized for the first time from a medicinal Nyssaceae plant species, Camptotheca acuminata. The full-length cDNA of CaDXR was 1823 bp containing a 1416 bp open reading frame (ORF) encoding a polypeptide of 472 amino acids. Comparative and bioinformatic analyses revealed that CaDXR showed extensive homology with DXRs from other plant species and contained a conserved transit peptide for plastids, an extended Pro-rich region and a highly conserved NADPH binding motif in its N-terminal region owned by all plant DXRs. Phylogenetic analysis indicated that CaDXR was more ancient than other plant DXRs. Tissue expression pattern analysis revealed that CaDXR expressed strongly in stem, weak in leaf and root. CaDXR was found to be an elicitor-responsive gene, which could be induced by exogenous elicitor of methyl jasmonate. The functional color complementation assay indicated that CaDXR could accelerate the biosynthesis of carotenoids in the Escherichia coli transformant, demonstrating that DXP reductoisomerase plays an influential step in isoprenoid biosynthesis.


Assuntos
Aldose-Cetose Isomerases/genética , Camptotheca/genética , Perfilação da Expressão Gênica , Genes de Plantas , Complexos Multienzimáticos/genética , Oxirredutases/genética , Aldose-Cetose Isomerases/química , Sequência de Aminoácidos , Sequência de Bases , Camptotheca/enzimologia , Clonagem Molecular , DNA Complementar , Escherichia coli/genética , Dados de Sequência Molecular , Complexos Multienzimáticos/química , Oxirredutases/química , Filogenia , Reação em Cadeia da Polimerase , RNA de Plantas/genética , RNA de Plantas/isolamento & purificação , Homologia de Sequência de Aminoácidos
9.
DNA Seq ; 18(4): 316-25, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17541839

RESUMO

A novel gene encoding a MDR-like ABC transporter protein was cloned from Catharanthus roseus, a medicinal plant with more than 120 kinds of secondary metabolites, through rapid amplification of cDNA ends (RACE). This gene (named as Crmdr1; GenBank accession no.: DQ660356) had a total length of 4395 bp with an open reading frame of 3801 bp, and encoded a predicted polypeptide of 1266 amino acids with a molecular weight of 137.1 kDa. The CrMDR1 protein shared 59.8, 62.5, 60.0 and 58.2% identity with other MDR proteins isolated from Arabidopsis thaliana (AAD31576), Coptis japonica (CjMDR), Gossypium hirsutum (GhMDR) and Triticum aestivum (TaMDR) at amino acid level, respectively. Southern blot analysis showed that Crmdr1 was a low-copy gene. Expression pattern analysis revealed that Crmdr1 constitutively expressed in the root, stem and leaf, but with lower expression in leaf. The domains analysis showed that CrMDR1 protein possessed two transmembrane domains (TMDs) and two nucleotide binding domains (NBDs) arranging in "TMD1-NBD1-TMD2-NBD2" direction, which is consistent with other MDR transporters. Within NBDs three characteristic motifs common to all ABC transporters, "Walker A", "Walker B" and C motif, were found. These results indicate that CrMDR1 is a MDR-like ABC transporter protein that may be involved in the transport and accumulation of secondary metabolites.


Assuntos
Transportadores de Cassetes de Ligação de ATP/química , Transportadores de Cassetes de Ligação de ATP/genética , Catharanthus/genética , Genes MDR , Transportadores de Cassetes de Ligação de ATP/isolamento & purificação , Sequência de Aminoácidos , Sequência de Bases , Dados de Sequência Molecular
10.
Gene ; 391(1-2): 80-90, 2007 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-17321073

RESUMO

ERF transcription factors can bind GCC boxes or non-GCC cis elements to regulate biotic and abiotic stress responses. Here, we report that an ERF transcription factor gene (GbERF2) was cloned by suppression subtraction hybridization from sea-island cotton after Verticillium dahliae attack. The GbERF2 cDNA has a total length of 1143 bp with an open reading frame of 597 bp. The genomic sequence of GbERF2 contains an intron of 515 bp. The gene encodes a predicated polypeptide of 198 amino acids with a molecular weight of 22.5 kDa and a calculated pI of 9.82. The GbERF2 protein has a highly conserved ERF domain while the nucleotide and amino acid sequences have low homology with other ERF plant proteins. An RNA blot revealed that GbERF2 is constitutively expressed in different tissues, but is higher in the leaves. High levels of GbERF2 transcripts rapidly accumulated when the plants were exposed to exogenous ethylene treatment and V. dahliae infection, while there was only a slight accumulation in response to salt, cold, drought and water stresses. In contrast, GbERF2 transcripts declined in response to exogenous abscisic acid (ABA) treatment. GbERF2 transgenic tobacco plants constitutively accumulated higher levels of pathogenesis-related gene transcripts, such as PR-1b, PR2 and PR4. The resistance of transgenic tobacco to fungal infection by Alternaria longipes was enhanced. However, the resistance to bacterial infection by Pseudomonas syringae pv. tabaci was not improved. These results show that GbERF2 plays an important role in response to ethylene stress and fungal attack in cotton.


Assuntos
Regulação da Expressão Gênica de Plantas , Gossypium/genética , Nicotiana/genética , Proteínas de Plantas/genética , Fatores de Transcrição/genética , Ácido Abscísico/farmacologia , Alternaria/patogenicidade , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , DNA Complementar/química , DNA Complementar/genética , Desastres , Gossypium/microbiologia , Imunidade Inata/genética , Dados de Sequência Molecular , Filogenia , Doenças das Plantas/genética , Doenças das Plantas/microbiologia , Folhas de Planta/genética , Folhas de Planta/microbiologia , Plantas Geneticamente Modificadas , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Análise de Sequência de DNA , Cloreto de Sódio/farmacologia , Nicotiana/efeitos dos fármacos , Nicotiana/microbiologia , Água/farmacologia
11.
J Biosci ; 31(2): 255-63, 2006 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-16809858

RESUMO

GbERF belongs to the ERF (ethylene responsive factor) family of transcription factors and regulates the GCC-box containing pathogen-related (PR) genes in the ethylene signal transduction pathway. To study the function of GbERF in the process of biotic stress, transgenic tobacco plants expressing GbERF were generated. Overexpression of GbERF did not change transgenic plant's phenotype and endogenous ethylene level. However, the expression profile of some ethylene-inducible GCC-box and non-GCC-box containing genes was altered, such as PR1b, PR2, PR3, PR4, Osmotin, CHN50, ACC oxidase and ACC synthase genes. These data indicate that the cotton GbERF could act as a transcriptional activator or repressor to regulate the differential expression of ethylene-inducible genes via GCC and non-GCC cis-elements. Moreover, the constitutive expression of GbERF in transgenic tobacco enhanced the plant's resistance to Pseudomonas syringae pv tabaci infection. In conclusion, GbERF mediates the expression of a wide array of PR and ethylene-responsive genes and plays an important role in the plant's response to biotic stress.


Assuntos
Etilenos/metabolismo , Regulação da Expressão Gênica de Plantas , Nicotiana , Proteínas de Plantas/metabolismo , Plantas Geneticamente Modificadas , Pseudomonas syringae/patogenicidade , Fatores de Transcrição/metabolismo , Sequência de Bases , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Fenótipo , Proteínas de Plantas/genética , Sementes/crescimento & desenvolvimento , Transdução de Sinais/fisiologia , Nicotiana/genética , Nicotiana/metabolismo , Nicotiana/microbiologia , Fatores de Transcrição/genética , Transformação Genética
12.
DNA Seq ; 17(5): 334-41, 2006 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-17343206

RESUMO

Class III homeodomain-leucine zipper (HD-Zip III) genes are important plant-specific transcription factors which have key roles in different stages of vascular and interfascicular fiber differentiation. A novel HD-Zip III gene, designated GbHB1, was isolated by suppression subtraction hybridization and RACE (rapid amplification of cDNA ends) from Gossypium barbadense (sea-island cotton). The GbHB1 cDNA has a total length of 3061 bp with an open reading frame of 2508 bp, encoding a predicated polypeptide of 836 amino acids with a molecular weight of 91.6 kDa and a calculated pI of 5.93. The putative polypeptide of GbHB1 is structurally characterized by a homeodomain positioned adjacent to a leucine zipper domain, which shares high identity with other reported HD-Zip III domains. DNA gel blotting analysis shows that GbHB1 is a low-copy gene. Organ expression pattern analysis reveals that GbHB1 expressed highly in ovule and stem, followed by in root, and low in leaf and cotyledon. The result suggests that GbHB1 may play a regulatory role in cotton interfascicular fiber development.


Assuntos
Gossypium/genética , Proteínas de Homeodomínio/genética , Proteínas de Homeodomínio/isolamento & purificação , Zíper de Leucina/genética , Proteínas de Plantas/genética , Proteínas de Plantas/isolamento & purificação , Fatores de Transcrição/genética , Fatores de Transcrição/isolamento & purificação , Sequência de Aminoácidos , Sequência de Bases , Proteínas de Homeodomínio/química , Zíper de Leucina/fisiologia , Dados de Sequência Molecular , Proteínas de Plantas/química , Fatores de Transcrição/química
13.
DNA Seq ; 16(2): 111-20, 2005 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16147862

RESUMO

1-deoxy-D-xylulose 5-phosphate (DXP) reductoisomerase (DXR, EC: 1.1.1.267) is the second enzyme of the non-mevalonate terpenoid pathway for isopentenyl diphosphate biosynthesis and actually catalyzes a committed step of the methylerythritol phosphate (MEP) pathway for ginkgolide biosynthesis. The full-length DXR cDNA sequence (GenBank accession number: AY443101) was cloned and characterized for the first time from gymnosperm plant species, Ginkgo biloba, using rapid amplification of cDNA ends (RACE) technique. The full-length cDNA of GbDXR was 1720 bp containing a 1431 bp open reading frame (ORF) encoding a peptide of 477 amino acids with a calculated molecular mass of 52 kDa and an isoelectric point of 6.58. Comparative and bioinformatic analyses revealed that GbDXR showed extensive homology with DXRs from other plant species and contained a conserved transit peptide for plastids, an extended Pro-rich region and a highly conserved NADPH binding motif in its N-terminal region owned by all plant DXRs. Phylogenetic analysis indicated that GbDXR was more ancient than other plant DXRs. Tissue expression pattern analysis indicated that GbDXR expressed in all tissues including roots, stems, leaves, pericarps and seeds and lower transcription level was observed in leaves of G. biloba than that of other tissues. The cloning and characterization of GbDXR will be helpful to understand more about the role of DXR involved in the ginkgolides biosynthesis at the molecular level.


Assuntos
Aldose-Cetose Isomerases/genética , Ginkgo biloba/genética , Complexos Multienzimáticos/genética , Oxirredutases/genética , Motivos de Aminoácidos , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , Biologia Computacional , DNA Complementar/metabolismo , Regulação da Expressão Gênica de Plantas , Ginkgolídeos/metabolismo , Focalização Isoelétrica , Modelos Moleculares , Dados de Sequência Molecular , NADP/química , Fases de Leitura Aberta , Peptídeos/química , Fosfatos/química , Filogenia , Proteínas de Plantas/química , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Homologia de Sequência de Aminoácidos , Distribuição Tecidual , Transcrição Gênica
14.
Mol Biol (Mosk) ; 39(1): 14-20, 2005.
Artigo em Russo | MEDLINE | ID: mdl-15773543

RESUMO

Geranylgeranyl diphosphate synthase (GGPPS, EC: 2.5.1.29) catalyzes the biosynthesis of geranylgeranyl diphosphate (GGPP), which is a key precursor for diterpenes including Taxol, one of the most potent antitumor drugs. In order to investigate the role of GGPP synthase in taxol biosynthesis, we cloned, characterized and functionally expressed the GGPP synthase gene from Taxus media. A 3743-bp genomic sequence of T. media was isolated by genome walking strategy which contained an 1182-bp open reading frame (ORF) encoding a 393-amino acid polypeptide that showed high similarity to other plant GGPPSs. Subsequently the full-length cDNA of the GGPPS gene of T. media (designated TmGGPPS) was amplified by RACE. Bioinformatic analysis showed that TmGGPPS was an intron-free gene and its deduced polypeptide contained all the five conserved domains and functional aspartate-rich motifs of the prenyltransferases. By constructing the phylogenetic tree of plant GGPPSs, it was found that plant-derived GGPPSs could be divided into two classes, angiosperm and gymnosperm classes, which might have evolved in parallel from the same ancestor. To our knowledge this was the first report that the geranylgeranyl diphosphate synthase genes were free of intron and evolved in parallel between angiosperms and gymnosperms. The coding sequence of TmGGPPS was expressed in yeast mutant (SFNY368) lacking of GGPP synthase activity through functional complementation, and the transgenic yeast showed to have activity of GGPP synthase. This was also the first time to use SFNY368 to identify the function of plant-derived GGPPSs. Furthermore, investigation of the impact of methyl jasmonate (MeJA) on the expression of TmGGPPS revealed that MeJA-treated T. media cultured cells had much higher expression of TmGGPPS than untreated cells.


Assuntos
Acetatos/farmacologia , Alquil e Aril Transferases/genética , Ciclopentanos/farmacologia , Genoma de Planta , Proteínas de Plantas/genética , Taxus/enzimologia , Leveduras/enzimologia , Alquil e Aril Transferases/metabolismo , Sequência de Aminoácidos , Clonagem Molecular , DNA Complementar/genética , Diterpenos/metabolismo , Indução Enzimática , Farnesiltranstransferase , Íntrons , Dados de Sequência Molecular , Mutação , Oxilipinas , Filogenia , Proteínas de Plantas/metabolismo , Fosfatos de Poli-Isoprenil/metabolismo , Homologia de Sequência de Aminoácidos , Leveduras/genética
15.
DNA Seq ; 15(1): 51-7, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15354355

RESUMO

An enolase-encoding cDNA clone from Chinese cabbage, Brassica campestris ssp. Pekinensis, was isolated. This gene (Accession number: AY307448) had a total length of 1580bp with an open reading frame of 1335bp, and encoded a predicted polypeptide of 444 amino acids with a molecular weight of 47.38 kDa. The deduced amino acid (aa) sequence shared identity with a number of enolases ranging from Bacillus subtilis to human beings and had much higher identity with other plant enolases than with enolases from Bacillus, yeast and human beings. Comparison of its primary structure with those of other enolases revealed the presence of an insertion of 5 amino acids in enolase of Chinese cabbage. Expression of the cloned enolase gene decreased under salt stress, but increased in response to low temperature. Southern blot analysis of genomic DNA indicated that low-copies of enolase gene were present in the genome of Chinese cabbage.


Assuntos
Brassica/genética , Fosfopiruvato Hidratase/genética , Sequência de Aminoácidos , Bacillus/enzimologia , Bacillus/genética , Sequência de Bases , Southern Blotting , Brassica/enzimologia , Clonagem Molecular , Sequência Conservada , Primers do DNA , DNA Complementar/genética , DNA de Plantas/genética , DNA de Plantas/isolamento & purificação , Humanos , Solanum lycopersicum/enzimologia , Solanum lycopersicum/genética , Dados de Sequência Molecular , Peso Molecular , Proteínas de Plantas/genética , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
16.
DNA Seq ; 15(1): 58-65, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15354356

RESUMO

A novel gene encoding a lectin-like protein kinase was cloned from the upland cotton (Gossypium hirsutum) through cDNA library screening. This gene (named as Ghlecrk; GenBank accession number: AY487461) had a total length of 2233bp with an open reading frame of 1926bp, and encoded a predicted polypeptide of 641 amino acids with a molecular weight of 71.16kDa. The GhLecRK protein shared 73, 65, 64 and 59% identity with other lectin-like kinase proteins isolated from A. thaliana (At3g53810, At2g37710, At3g55550) and Populus nigra (PnLPK) at amino acid level, respectively. Southern blot analysis showed that GhLecRK belonged to a multi-copy gene family. Expression patterns revealed that GhLecRK was enriched in the developing boll (six days post anthesis, 6DPA) and shoot, but low in the root and stem and no expression in the leaf. The domains analysis showed that GhlecRK protein possessed many activating sites/domains including ATP-binding sites, a transmembrane region, a lectin-like domain and a kinase domain. These results indicate that GhlecRK is a lectin-like membrane protein that may play an important role in the phase of fiber development.


Assuntos
Gossypium/genética , Proteínas Serina-Treonina Quinases/genética , Sequência de Aminoácidos , Arabidopsis/enzimologia , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Sequência de Bases , Clonagem Molecular , Sequência Conservada , DNA Complementar/genética , DNA de Plantas/genética , DNA de Plantas/isolamento & purificação , Biblioteca Gênica , Gossypium/enzimologia , Dados de Sequência Molecular , Fosfotransferases/química , Fosfotransferases/genética , Fosfotransferases/metabolismo , Estruturas Vegetais/enzimologia , Estruturas Vegetais/genética , Proteínas Serina-Treonina Quinases/química , Proteínas Serina-Treonina Quinases/metabolismo , RNA de Plantas/isolamento & purificação , Alinhamento de Sequência
17.
DNA Seq ; 15(1): 71-6, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15354358

RESUMO

The full-length cDNA of an IAA-responsive gene was cloned from Gossypium barbadense L. (designated as Gbiaa-Re) by rapid amplification of cDNA ends (RACE). Gbiaa-Re gene was 1043-bp long and contained a 573-bp open reading frame encoding a polypeptide of 190 amino acid residues. Homology analysis revealed that Gbiaa-Re strongly resembled known plant IAA-responsive genes. The conserved integrated domain "AUX_IAA, AUX/IAA family" resided within the region from L11, to V190 of GbIAA-RE, and the 4 typically conserved domains of IAA-responsive gene family were all found in GbIAA-RE. The secondary structure of GbIAA-RE consisted of 20.53% alpha helix, 13.68% extended strand and 65.79% random coil. In total, 12 phosphorylation sites, 1 N-glycosylation site and 4 O-beta-GlcNAc attachment sites were predicted. Southern blot analysis indicated that Gbiaa-Re belonged to a low-copy gene family. Semi-quantitative PCR analysis indicated that the expression of Gbiaa-Re gene was inducible by IAA. Our studies suggested that Gbiaa-Re was a new member of plant AUX/IAA gene family.


Assuntos
Genes de Plantas/efeitos dos fármacos , Gossypium/genética , Ácido Iodoacético/farmacologia , Sequência de Aminoácidos , Sequência de Bases , Códon de Iniciação/genética , Códon de Terminação/genética , Primers do DNA , DNA Complementar/genética , Dados de Sequência Molecular , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
18.
Funct Plant Biol ; 31(1): 73-81, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-32688882

RESUMO

In plants, the first committed step in the pathway for biosynthesis of isoprenoids is catalysed by 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR, EC: 1.1.1.34). Here we report for the first time the cloning of a full-length cDNA encoding HMGR (Tm-HMGR) from a taxol-producing gymnosperm, Taxus media Rehder. The full-length cDNA of Tm-HMGR (GenBank accession number: AY277740) was 2307 base pairs (bp), with a 1791-bp open reading frame (ORF) encoding a 596-amino-acid polypeptide. Bioinformatic analysis revealed that Tm-HMGR contained two trans-membrane domains and a catalytic domain, and showed high homology to other plant HMGRs. Phylogenetic analysis indicated that Tm-HMGR was more ancient than other plant HMGRs. The structural modelling showed that Tm-HMGR had the typical spatial structure of HMGRs whose catalytic domains could be folded and divided into three spatial domains, L-domain, N-domain and S-domain. Southern blot analysis revealed that Tm-HMGR belonged to a small HMGR gene family. Northern blot analysis showed that Tm-HMGR was expressed in roots, stems and needles, with higher expression in stems and needles than in roots. Functional complementation of Tm-HMGR in a HMGR-deficient mutant yeast demonstrated that Tm-HMGR mediated the biosynthesis of mevalonate and provided the general precursor for taxol biosynthesis.

19.
DNA Seq ; 14(4): 303-10, 2003 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-14631653

RESUMO

A full-length cDNA clone with high homology with Brassica napus peptide methionine sulfoxide reductase (PMSR) gene (BnPMSR), which could reverse oxidation of methionine residues into MetSO in protein, was cloned by suppression subtraction hybridization and cDNA library screening from Gossypium barbadense. This gene (named as cMsrA; Accession number: AY224208) had a total length of 1059 bp with an open reading frame of 765 bp, and encoded a predicted polypeptide of 255 amino acids with a molecular weight of 28.4 kDa. The cMsrA protein shared 68.6, 66.3 and 65.8% identity with those PMSR proteins isolated from B. napus, A. thaliana and L. sativa respectively. Expression patterns revealed that cMsrA was enriched later and weaker in resistant variety 7124 (Gossypium barbadense) than sensitive variety Ejing-1 (G. hirsutum) under salt treatment and pathogens attack. These results indicated that cMsrA played an important role in protecting the cells against oxidative damage during the pathogens and salt stress.


Assuntos
Expressão Gênica , Gossypium/genética , Oxirredutases/genética , Sequência de Aminoácidos , Sequência de Bases , Southern Blotting , Primers do DNA , Biblioteca Gênica , Metionina Sulfóxido Redutases , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Alinhamento de Sequência , Análise de Sequência de DNA , Cloreto de Sódio
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