Prediction of miRNAs and diseases association based on sparse autoencoder and MLP.

Introduction: MicroRNAs (miRNAs) are small and non-coding RNA molecules which have multiple important regulatory roles within cells. With the deepening research on miRNAs, more and more researches show that the abnormal expression of miRNAs is closely related to various diseases. The relationship between miRNAs and diseases is crucial for discovering the pathogenesis of diseases and exploring new treatment methods. Methods: Therefore, we propose a new sparse autoencoder and MLP method (SPALP) to predict the association between miRNAs and diseases. In this study, we adopt advanced deep learning technologies, including sparse autoencoder and multi-layer perceptron (MLP), to improve the accuracy of predicting miRNA-disease associations. Firstly, the SPALP model uses a sparse autoencoder to perform feature learning and extract the initial features of miRNAs and diseases separately, obtaining the latent features of miRNAs and diseases. Then, the latent features combine miRNAs functional similarity data with diseases semantic similarity data to construct comprehensive miRNAs-diseases datasets. Subsequently, the MLP model can predict the unknown association among miRNAs and diseases. Result: To verify the performance of our model, we set up several comparative experiments. The experimental results show that, compared with traditional methods and other deep learning prediction methods, our method has significantly improved the accuracy of predicting miRNAs-disease associations, with 94.61% accuracy and 0.9859 AUC value. Finally, we conducted case study of SPALP model. We predicted the top 30 miRNAs that might be related to Lupus Erythematosus, Ecute Myeloid Leukemia, Cardiovascular, Stroke, Diabetes Mellitus five elderly diseases and validated that 27, 29, 29, 30, and 30 of the top 30 are indeed associated. Discussion: The SPALP approach introduced in this study is adept at forecasting the links between miRNAs and diseases, addressing the complexities of analyzing extensive bioinformatics datasets and enriching the comprehension contribution to disease progression of miRNAs.

Metabolic phenotyping with computed tomography deep learning for metabolic syndrome, osteoporosis and sarcopenia predicts mortality in adults.

BACKGROUND: Computed tomography (CT) body compositions reflect age-related metabolic derangements. We aimed to develop a multi-outcome deep learning model using CT multi-level body composition parameters to detect metabolic syndrome (MS), osteoporosis and sarcopenia by identifying metabolic clusters simultaneously. We also investigated the prognostic value of metabolic phenotyping by CT model for long-term mortality. METHODS: The derivation set (n = 516; 75% train set, 25% internal test set) was constructed using age- and sex-stratified random sampling from two community-based cohorts. Data from participants in the individual health assessment programme (n = 380) were used as the external test set 1. Semi-automatic quantification of body compositions at multiple levels of abdominal CT scans was performed to train a multi-layer perceptron (MLP)-based multi-label classification model. External test set 2 to test the prognostic value of the model output for mortality was built using data from individuals who underwent abdominal CT in a tertiary-level institution (n = 10 141). RESULTS: The mean ages of the derivation and external sets were 62.8 and 59.7 years, respectively, without difference in sex distribution (women 50%) or body mass index (BMI; 23.9 kg/m2). Skeletal muscle density (SMD) and bone density (BD) showed a more linear decrement across age than skeletal muscle area. Alternatively, an increase in visceral fat area (VFA) was observed in both men and women. Hierarchical clustering based on multi-level CT body composition parameters revealed three distinctive phenotype clusters: normal, MS and osteosarcopenia clusters. The L3 CT-parameter-based model, with or without clinical variables (age, sex and BMI), outperformed clinical model predictions of all outcomes (area under the receiver operating characteristic curve: MS, 0.76 vs. 0.55; osteoporosis, 0.90 vs. 0.79; sarcopenia, 0.85 vs. 0.81 in external test set 1; P < 0.05 for all). VFA contributed the most to the MS predictions, whereas SMD, BD and subcutaneous fat area were features of high importance for detecting osteoporosis and sarcopenia. In external test set 2 (mean age 63.5 years, women 79%; median follow-up 4.9 years), a total of 907 individuals (8.9%) died during follow-up. Among model-predicted metabolic phenotypes, sarcopenia alone (adjusted hazard ratio [aHR] 1.55), MS + sarcopenia (aHR 1.65), osteoporosis + sarcopenia (aHR 1.83) and all three combined (aHR 1.87) remained robust predictors of mortality after adjustment for age, sex and comorbidities. CONCLUSIONS: A CT body composition-based MLP model detected MS, osteoporosis and sarcopenia simultaneously in community-dwelling and hospitalized adults. Metabolic phenotypes predicted by the CT MLP model were associated with long-term mortality, independent of covariates.

Developing a Tuned Three-Layer Perceptron Fed with Trained Deep Convolutional Neural Networks for Cervical Cancer Diagnosis.

Cervical cancer is one of the most common types of cancer among women, which has higher death-rate than many other cancer types. The most common way to diagnose cervical cancer is to analyze images of cervical cells, which is performed using Pap smear imaging test. Early and accurate diagnosis can save the lives of many patients and increase the chance of success of treatment methods. Until now, various methods have been proposed to diagnose cervical cancer based on the analysis of Pap smear images. Most of the existing methods can be divided into two groups of methods based on deep learning techniques or machine learning algorithms. In this study, a combination method is presented, whose overall structure is based on a machine learning strategy, where the feature extraction stage is completely separate from the classification stage. However, in the feature extraction stage, deep networks are used. In this paper, a multi-layer perceptron (MLP) neural network fed with deep features is presented. The number of hidden layer neurons is tuned based on four innovative ideas. Additionally, ResNet-34, ResNet-50 and VGG-19 deep networks have been used to feed MLP. In the presented method, the layers related to the classification phase are removed in these two CNN networks, and the outputs feed the MLP after passing through a flatten layer. In order to improve performance, both CNNs are trained on related images using the Adam optimizer. The proposed method has been evaluated on the Herlev benchmark database and has provided 99.23 percent accuracy for the two-classes case and 97.65 percent accuracy for the 7-classes case. The results have shown that the presented method has provided higher accuracy than the baseline networks and many existing methods.

Development of machine learning models to predict posterior capsule rupture based on the EUREQUO registry.

PURPOSE: To evaluate the performance of different probabilistic classifiers to predict posterior capsule rupture (PCR) prior to cataract surgery. METHODS: Three probabilistic classifiers were constructed to estimate the probability of PCR: a Bayesian network (BN), logistic regression (LR) model, and multi-layer perceptron (MLP) network. The classifiers were trained on a sample of 2 853 376 surgeries reported to the European Registry of Quality Outcomes for Cataract and Refractive Surgery (EUREQUO) between 2008 and 2018. The performance of the classifiers was evaluated based on the area under the precision-recall curve (AUPRC) and compared to existing scoring models in the literature. Furthermore, direct risk factors for PCR were identified by analysing the independence structure of the BN. RESULTS: The MLP network predicted PCR overall the best (AUPRC 13.1 ± 0.41%), followed by the BN (AUPRC 8.05 ± 0.39%) and the LR model (AUPRC 7.31 ± 0.15%). Direct risk factors for PCR include preoperative best-corrected visual acuity (BCVA), year of surgery, operation type, anaesthesia, target refraction, other ocular comorbidities, white cataract, and corneal opacities. CONCLUSIONS: Our results suggest that the MLP network performs better than existing scoring models in the literature, despite a relatively low precision at high recall. Consequently, implementing the MLP network in clinical practice can potentially decrease the PCR rate.

Analysis of antioxidant potential of fruit and vegetable juices available in Serbian markets.

Antioxidants in fruit and vegetable juices have become increasingly popular because of their potential health benefits. Nowadays, juice mixes made from berries present frequent consumer choices, due to their nutritive value and high content of bioactive compounds. Commercial fruit and vegetable juices available in Serbian markets (n = 32) were analyzed for the physicochemical properties, chemical composition, and antioxidant activity. Relative antioxidant capacity index was used for the ranking of the juices according to antioxidant capacity, while antioxidant effectiveness of phenolic compounds contained in juice samples was investigated depending on phenolic antioxidant coefficients. Principal component analysis was applied to study the data structure. In addition, a multi-layer perceptron model was used for modeling an artificial neural network model (ANN) for prediction antioxidant activity (DPPH, reducing power, and ABTS) based on total phenolic, total pigments, and vitamin C content. The obtained ANN showed good prediction capabilities (the r2 values during training cycle for output variables were 0.942). Phenolic, pigments, and vitamin C contents showed a positive correlation with the investigated antioxidant activity. The consumption of commercial berry fruit juices available in Serbian markets may deliver great health benefits through the supply of natural antioxidants.

Immune subtype identification and multi-layer perceptron classifier construction for breast cancer.

Introduction: Breast cancer is a heterogeneous tumor. Tumor microenvironment (TME) has an important effect on the proliferation, metastasis, treatment, and prognosis of breast cancer. Methods: In this study, we calculated the relative proportion of tumor infiltrating immune cells (TIICs) in the breast cancer TME, and used the consensus clustering algorithm to cluster the breast cancer subtypes. We also developed a multi-layer perceptron (MLP) classifier based on a deep learning framework to detect breast cancer subtypes, which 70% of the breast cancer research cohort was used for the model training and 30% for validation. Results: By performing the K-means clustering algorithm, the research cohort was clustered into two subtypes. The Kaplan-Meier survival estimate analysis showed significant differences in the overall survival (OS) between the two identified subtypes. Estimating the difference in the relative proportion of TIICs showed that the two subtypes had significant differences in multiple immune cells, such as CD8, CD4, and regulatory T cells. Further, the expression level of immune checkpoint molecules (PDL1, CTLA4, LAG3, TIGIT, CD27, IDO1, ICOS) and tumor mutational burden (TMB) also showed significant differences between the two subtypes, indicating the clinical value of the two subtypes. Finally, we identified a 38-gene signature and developed a multilayer perceptron (MLP) classifier that combined multi-gene signature to identify breast cancer subtypes. The results showed that the classifier had an accuracy rate of 93.56% and can be robustly used for the breast cancer subtype diagnosis. Conclusion: Identification of breast cancer subtypes based on the immune signature in the tumor microenvironment can assist clinicians to effectively and accurately assess the progression of breast cancer and formulate different treatment strategies for different subtypes.

Prediction of 6 months endoscopic third ventriculostomy success rate in patients with hydrocephalus using a multi-layer perceptron network.

OBJECTIVE: Discrimination between patients most likely to benefit from endoscopic third ventriculostomy (ETV) and those at higher risk of failure is challenging. Compared to other standard models, we have tried to develop a prognostic multi-layer perceptron model based on potentially high-impact new variables for predicting the ETV success score (ETVSS). METHODS: Clinical and radiological data of 128 patients have been collected, and ETV outcomes were evaluated. The success of ETV was defined as remission of symptoms and not requiring VPS for six months after surgery. Several clinical and radiological features have been used to construct the model. Then the Binary Gravitational Search algorithm was applied to extract the best set of features. Finally, two models were created based on these features, multi-layer perceptron, and logistic regression. RESULTS: Eight variables have been selected (age, callosal angle, bifrontal angle, bicaudate index, subdural hygroma, temporal horn width, third ventricle width, frontal horn width). The neural network model was constructed upon the selected features. The result was AUC:0.913 and accuracy:0.859. Then the BGSA algorithm removed half of the features, and the remaining (Age, Temporal horn width, Bifrontal angle, Frontal horn width) were applied to construct models. The ANN could reach an accuracy of 0.84, AUC:0.858 and Positive Predictive Value (PPV): 0.92, which was higher than the logistic regression model (accuracy:0.80, AUC: 0.819, PPV: 0.89). CONCLUSION: The research findings have shown that the MLP model is more effective than the classic logistic regression tools in predicting ETV success rate. In this model, two newly added features, the width of the lateral ventricle's temporal horn and the lateral ventricle's frontal horn, yield a relatively high inter-observer reliability.

Improving the Accuracy of Ensemble Machine Learning Classification Models Using a Novel Bit-Fusion Algorithm for Healthcare AI Systems.

Healthcare AI systems exclusively employ classification models for disease detection. However, with the recent research advances into this arena, it has been observed that single classification models have achieved limited accuracy in some cases. Employing fusion of multiple classifiers outputs into a single classification framework has been instrumental in achieving greater accuracy and performing automated big data analysis. The article proposes a bit fusion ensemble algorithm that minimizes the classification error rate and has been tested on various datasets. Five diversified base classifiers k- nearest neighbor (KNN), Support Vector Machine (SVM), Multi-Layer Perceptron (MLP), Decision Tree (D.T.), and Naïve Bayesian Classifier (N.B.), are used in the implementation model. Bit fusion algorithm works on the individual input from the classifiers. Decision vectors of the base classifier are weighted transformed into binary bits by comparing with high-reliability threshold parameters. The output of each base classifier is considered as soft class vectors (CV). These vectors are weighted, transformed and compared with a high threshold value of initialized δ = 0.9 for reliability. Binary patterns are extracted, and the model is trained and tested again. The standard fusion approach and proposed bit fusion algorithm have been compared by average error rate. The error rate of the Bit-fusion algorithm has been observed with the values 5.97, 12.6, 4.64, 0, 0, 27.28 for Leukemia, Breast cancer, Lung Cancer, Hepatitis, Lymphoma, Embryonal Tumors, respectively. The model is trained and tested over datasets from UCI, UEA, and UCR repositories as well which also have shown reduction in the error rates.

Diagnosis of triple negative breast cancer using expression data with several machine learning tools.

Breast cancer is one of the top three commonly caused cancers worldwide. Triple Negative Breast Cancer (TNBC), a subtype of breast cancer, lacks expression of the oestrogen receptor, progesterone receptor, and HER2. This makes the prognosis poor and early detection hard. Therefore, AI based neural models such as Binary Logistic Regression, Multi-Layer Perceptron and Radial Basis Functions were used for differential diagnosis of normal samples and TNBC samples collected from signal intensity data of microarray experiment. Genes that were significantly upregulated in TNBC were compared with healthy controls. The MLP model classified TNBC and normal cells with anaccuracy of 93.4%. However, RBF gave 74% accuracy and binary Logistic Regression model showed an accuracy of 90.0% in identifying TNBC cases.

MRI-Based Grading of Clear Cell Renal Cell Carcinoma Using a Machine Learning Classifier.

OBJECTIVE: To develop a machine learning (ML)-based classifier for discriminating between low-grade (ISUP I-II) and high-grade (ISUP III-IV) clear cell renal cell carcinomas (ccRCCs) using MRI textures. MATERIALS AND METHODS: We retrospectively evaluated a total of 99 patients (with 61 low-grade and 38 high-grade ccRCCs), who were randomly divided into a training set (n = 70) and a validation set (n = 29). Regions of interest (ROIs) of all tumors were manually drawn three times by a radiologist at the maximum lesion level of the cross-sectional CMP sequence images. The quantitative texture analysis software, MaZda, was used to extract texture features, including histograms, co-occurrence matrixes, run-length matrixes, gradient models, and autoregressive models. Reproducibility of the texture features was assessed with the intra-class correlation coefficient (ICC). Features were chosen based on their importance coefficients in a random forest model, while the multi-layer perceptron algorithm was used to build a classifier on the training set, which was later evaluated with the validation set. RESULTS: The ICCs of 257 texture features were equal to or higher than 0.80 (0.828-0.998. Six features, namely Kurtosis, 135dr_RLNonUni, Horzl_GLevNonU, 135dr_GLevNonU, S(4,4)Entropy, and S(0,5)SumEntrp, were chosen to develop the multi-layer perceptron classifier. A three-layer perceptron model, which has 229 nodes in the hidden layer, was trained on the training set. The accuracy of the model was 95.7% with the training set and 86.2% with the validation set. The areas under the receiver operating curves were 0.997 and 0.758 for the training and validation sets, respectively. CONCLUSIONS: A machine learning-based grading model was developed that can aid in the clinical diagnosis of clear cell renal cell carcinoma using MRI images.

GraphDTI: A robust deep learning predictor of drug-target interactions from multiple heterogeneous data.

Traditional techniqueset identification, we developed GraphDTI, a robust machine learning framework integrating the molecular-level information on drugs, proteins, and binding sites with the system-level information on gene expression and protein-protein interactions. In order to properly evaluate the performance of GraphDTI, we compiled a high-quality benchmarking dataset and devised a new cluster-based cross-validation p to identify macromolecular targets for drugs utilize solely the information on a query drug and a putative target. Nonetheless, the mechanisms of action of many drugs depend not only on their binding affinity toward a single protein, but also on the signal transduction through cascades of molecular interactions leading to certain phenotypes. Although using protein-protein interaction networks and drug-perturbed gene expression profiles can facilitate system-level investigations of drug-target interactions, utilizing such large and heterogeneous data poses notable challenges. To improve the state-of-the-art in drug targrotocol. Encouragingly, GraphDTI not only yields an AUC of 0.996 against the validation dataset, but it also generalizes well to unseen data with an AUC of 0.939, significantly outperforming other predictors. Finally, selected examples of identified drug-target interactions are validated against the biomedical literature. Numerous applications of GraphDTI include the investigation of drug polypharmacological effects, side effects through off-target binding, and repositioning opportunities.

Bispectral Analysis of Heart Rate Variability to Characterize and Help Diagnose Pediatric Sleep Apnea.

Pediatric obstructive sleep apnea (OSA) is a breathing disorder that alters heart rate variability (HRV) dynamics during sleep. HRV in children is commonly assessed through conventional spectral analysis. However, bispectral analysis provides both linearity and stationarity information and has not been applied to the assessment of HRV in pediatric OSA. Here, this work aimed to assess HRV using bispectral analysis in children with OSA for signal characterization and diagnostic purposes in two large pediatric databases (0-13 years). The first database (training set) was composed of 981 overnight ECG recordings obtained during polysomnography. The second database (test set) was a subset of the Childhood Adenotonsillectomy Trial database (757 children). We characterized three bispectral regions based on the classic HRV frequency ranges (very low frequency: 0-0.04 Hz; low frequency: 0.04-0.15 Hz; and high frequency: 0.15-0.40 Hz), as well as three OSA-specific frequency ranges obtained in recent studies (BW1: 0.001-0.005 Hz; BW2: 0.028-0.074 Hz; BWRes: a subject-adaptive respiratory region). In each region, up to 14 bispectral features were computed. The fast correlation-based filter was applied to the features obtained from the classic and OSA-specific regions, showing complementary information regarding OSA alterations in HRV. This information was then used to train multi-layer perceptron (MLP) neural networks aimed at automatically detecting pediatric OSA using three clinically defined severity classifiers. Both classic and OSA-specific MLP models showed high and similar accuracy (Acc) and areas under the receiver operating characteristic curve (AUCs) for moderate (classic regions: Acc = 81.0%, AUC = 0.774; OSA-specific regions: Acc = 81.0%, AUC = 0.791) and severe (classic regions: Acc = 91.7%, AUC = 0.847; OSA-specific regions: Acc = 89.3%, AUC = 0.841) OSA levels. Thus, the current findings highlight the usefulness of bispectral analysis on HRV to characterize and diagnose pediatric OSA.

Using multi-layer perceptron with Laplacian edge detector for bladder cancer diagnosis.

In this paper, the urinary bladder cancer diagnostic method which is based on Multi-Layer Perceptron and Laplacian edge detector is presented. The aim of this paper is to investigate the implementation possibility of a simpler method (Multi-Layer Perceptron) alongside commonly used methods, such as Deep Learning Convolutional Neural Networks, for the urinary bladder cancer detection. The dataset used for this research consisted of 1997 images of bladder cancer and 986 images of non-cancer tissue. The results of the conducted research showed that using Multi-Layer Perceptron trained and tested with images pre-processed with Laplacian edge detector are achieving AUC value up to 0.99. When different image sizes are compared it can be seen that the best results are achieved if 50×50 and 100×100 images were used.

Fusion of k-Gabor features from medio-lateral-oblique and craniocaudal view mammograms for improved breast cancer diagnosis.

CONTEXT: Computer-aided diagnosis (CAD) combining mammographic features from cranio-caudal (CC) and medio-lateral-oblique (MLO) views improve the diagnostic performance of breast cancer. This could help doctors incorrect diagnosis at the earlier stage thereby reducing mortality. AIM: The aim of this study is to propose a breast cancer diagnostic technique for improving the diagnostic accuracy and reducing the false positive rate by fusing mammographic features from CC and MLO views. SETTINGS AND DESIGN: The MLO and CC view mammograms of same patients must be used to extract k-Gabor features and then fused to form a single feature vector. SUBJECTS AND METHODS: Mammograms from the digital database for screening mammography (DDSM) and INbreast datasets are collected. k-Gabor features extracted from both MLO and CC view mammograms are fused serially and reduced by principal component analysis (PCA) or genetic algorithm. The reduced features are classified using a multi-layer perceptron feed forward neural network with backpropagation learning algorithm. STATISTICAL ANALYSIS USED: Various relevant performance metrics such as accuracy, sensitivity, specificity, discriminant power, Mathews correlation coefficient (MCC), F1 score and Kappa are used to analyze the classification results. RESULTS: The accuracy, sensitivity, specificity, discriminant power, MCC, F1 score, and Kappa obtained as 92.5%, 93%, 91.8%, 1.198, 0.845, 0.936, and 0.845, respectively, for DDSM. For INbreast, the above specified metrics are 87.5%, 90.9%, 85.7%, 0.980, 0.741, 0.833, and 0.734, respectively. The results show 4.4%, 4.3%, and 9.4% improvements in accuracy, sensitivity, and specificity, respectively, compared to the previous works. CONCLUSIONS: Detailed analysis of the results implies that the serial fusion of k-Gabor features extracted from MLO and CC views with PCA reduction in CAD significantly improves the diagnostic performance.

Computer-Assisted Diagnosis System for Breast Cancer in Computed Tomography Laser Mammography (CTLM).

Computed tomography laser mammography (Eid et al. Egyp J Radiol Nucl Med, 37(1): p. 633-643, 1) is a non-invasive imaging modality for breast cancer diagnosis, which is time-consuming and challenging for the radiologist to interpret the images. Some issues have increased the missed diagnosis of radiologists in visual manner assessment in CTLM images, such as technical reasons which are related to imaging quality and human error due to the structural complexity in appearance. The purpose of this study is to develop a computer-aided diagnosis framework to enhance the performance of radiologist in the interpretation of CTLM images. The proposed CAD system contains three main stages including segmentation of volume of interest (VOI), feature extraction and classification. A 3D Fuzzy segmentation technique has been implemented to extract the VOI. The shape and texture of angiogenesis in CTLM images are significant characteristics to differentiate malignancy or benign lesions. The 3D compactness features and 3D Grey Level Co-occurrence matrix (GLCM) have been extracted from VOIs. Multilayer perceptron neural network (MLPNN) pattern recognition has developed for classification of the normal and abnormal lesion in CTLM images. The performance of the proposed CAD system has been measured with different metrics including accuracy, sensitivity, and specificity and area under receiver operative characteristics (AROC), which are 95.2, 92.4, 98.1, and 0.98%, respectively.

Aplicação de técnicas de redes neurais e modelagem atmosférica para elaboração de previsões de vazão na Bacia do Rio Grande (MG) / Application of neural networks techniques and atmospheric modeling to elaborate inflow forecasts in the Rio Grande Basin (MG), Brazil

RESUMO Neste estudo foi proposta a elaboração de um modelo de previsão de vazões no horizonte de dez dias para a Usina Hidrelétrica de Furnas, localizada na Bacia do Rio Grande, Minas Gerais, a partir da aplicação de redes neurais artificiais (RNA), informações de vazão natural e precipitação observada e prevista. O modelo foi desenvolvido utilizando o software Matlab(r) Neural Network Toolbox. Escolheu-se uma rede neural do tipo perceptron multicamadas (MLP), treinada com algoritmo supervisionado de retropropagação Levenberg-Marquardt. As previsões de precipitação foram obtidas a partir do modelo ETA/Centro de Previsão do Tempo e Estudos Climáticos (CPTEC), e utilizadas com e sem tratamento matemático. Foram realizados três experimentos, dividindo-se o histórico de dados em três períodos, sendo o primeiro para a calibração do modelo, o segundo para a validação e o terceiro para os testes. Em cada experimento foi variado o conjunto de dados de entrada, sendo utilizada, no primeiro experimento, somente a vazão passada para prever os dez dias de vazão futura. No segundo foi adicionada a precipitação observada e, no terceiro, a previsão de precipitação. Os resultados da modelagem chuva-vazão obtidos com a previsão de precipitaçãodo modelo ETA não apresentaram melhorias estatísticas em comparação com os experimentos que só utilizaram informações passadas. No entanto, quando se utilizou a previsão de precipitação corrigida matematicamente, observou-se uma melhora sensível tanto nos índices estatísticos quanto na representação da previsão simulada no hidrograma, ficando o desempenho da modelagem proposta neste estudo semelhante à encontrada em modelos conceituais do tipo chuva-vazão.

ABSTRACT The purpose of this study was to elaborate a ten-year runoff forecast model for the Furnas hydroelectric plant. The facility is located in the Rio Grande Basin in the state of Minas Gerais, Brazil. Artificial neural networks were used to determine natural flow as well as observed and predicted precipitation. The model was created using the Matlab(r) Neural Network Toolbox software, and the multi-layers perceptron (MLP) was trained with supervised learning algorithm Levenberg-Marquardt. Precipitation forecasts derived from ETA/Centro de Previsão do Tempo e Estudos Climáticos (CPTEC) model, and both raw and mathematical adjusted data were used. Historical data was separated in three different periods in order to calibrate, validate and test the model. The first share was used for calibration, the second portion was used for validation and the third one to test the model. In each experiment the input data was modified; thus, in the first experiment, to forecast the ten day runoff, only the past runoff data was considered. In the second experiment, observed precipitation was added; and in the third one, the forecast precipitation was added. The rainfall-runoff modeling results did not show any significant improvement in the statistics when ETA input data is compared with the experiments that only used past information as input. Nevertheless, when forecast precipitation was used with mathematical adjustment, a mild improvement was shown for the statistics index and for the forecast hydrogram simulation. As a result, the modeling performance proposed in this study is similar to that found in conceptual models of rainfall-runoff type.

A new texture and shape based technique for improving meningioma classification.

Over the past decade, computer-aided diagnosis is rapidly growing due to the availability of patient data, sophisticated image acquisition tools and advancement in image processing and machine learning algorithms. Meningiomas are the tumors of brain and spinal cord. They account for 20% of all the brain tumors. Meningioma subtype classification involves the classification of benign meningioma into four major subtypes: meningothelial, fibroblastic, transitional, and psammomatous. Under the microscope, the histology images of these four subtypes show a variety of textural and structural characteristics. High intraclass and low interclass variabilities in meningioma subtypes make it an extremely complex classification problem. A number of techniques have been proposed for meningioma subtype classification with varying performances on different subtypes. Most of these techniques employed wavelet packet transforms for textural features extraction and analysis of meningioma histology images. In this article, a hybrid classification technique based on texture and shape characteristics is proposed for the classification of meningioma subtypes. Meningothelial and fibroblastic subtypes are classified on the basis of nuclei shapes while grey-level co-occurrence matrix textural features are used to train a multilayer perceptron for the classification of transitional and psammomatous subtypes. On the whole, average classification accuracy of 92.50% is achieved through the proposed hybrid classifier; which to the best of our knowledge is the highest.

Funciones de transferencia en el perceptrón multicapa: efecto de su combinación en entrenamiento local y distribuido / Transfer functions in the multilayer perceptron: effects of its combination on local and distributed training

El perceptrón multicapa (PMC) figura dentro de los tipos de redes neuronales artificiales (RNA) con resultados útiles en los estudios de relación estructura-actividad. Dado que los volúmenes de datos en proyectos de Bioinformática son eventualmente grandes, se propuso evaluar algoritmos para acortar el tiempo de entrenamiento de la red sin afectar su eficiencia. Se desarrolló un algoritmo para el entrenamiento local y distribuido del PMC con la posibilidad de variar las funciones de transferencias para lo cual se utilizaron el Weka y la Plataforma de Tareas Distribuidas Tarenal para distribuir el entrenamiento del perceptrón multicapa. Se demostró que en dependencia de la muestra de entrenamiento, la variación de las funciones de transferencia pueden reportar resultados mucho más eficientes que los obtenidos con la clásica función Sigmoidal, con incremento de la g-media entre el 4.5 y el 17 por ciento. Se encontró además que en los entrenamientos distribuidos es posible alcanzar eventualmente mejores resultados que los logrados en ambiente local(AU)

The multilayer perceptron (PMC) ranks among the types of artificial neural networks (ANN), which has provided better results in studies of structure-activity relationship. As the data volumes in Bioinformatics' projects are eventually big, it was proposed to evaluate algorithms to shorten the training time of the network without affecting its efficiency. There were evaluated different tools that work with ANN and were selected Weka algorithm for extracting the network and the Platform for Distributed Task Tarenal to distribute the training of multilayer perceptron. Finally, it was developed a training algorithm for local and distributed the MLP with the possibility of varying transfer functions. It was shown that depending on the training sample, the change of transfer functions can yield results much more efficient than those obtained with the classic sigmoid function with increased g-media between 4.5 and 17 percent. Moreover, it was found that with distributed training can be achieved eventually, better results than those achieved in the local environment(AU)

Model for End-stage Liver Disease.

Model for end-stage liver disease (MELD) score, initially developed to predict survival following transjugular intrahepatic portosystemic shunt was subsequently found to be accurate predictor of mortality amongst patents with end-stage liver disease. Since 2002, MELD score using 3 objective variables (serum bilirubin, serum creatinine, and institutional normalized ratio) has been used worldwide for listing and transplanting patients with end-stage liver disease allowing transplanting sicker patients first irrespective of the wait time on the list. MELD score has also been shown to be accurate predictor of survival amongst patients with alcoholic hepatitis, following variceal hemorrhage, infections in cirrhosis, after surgery in patients with cirrhosis including liver resection, trauma, and hepatorenal syndrome (HRS). Although, MELD score is closest to the ideal score, there are some limitations including its inaccuracy in predicting survival in 15-20% cases. Over the last decade, many efforts have been made to further improve and refine MELD score. Until, a better score is developed, liver allocation would continue based on the currently used MELD score.