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1.
Bioorg Med Chem ; 110: 117815, 2024 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-38943807

RESUMO

The adenylation (A) domain of non-ribosomal peptide synthetases (NRPSs) catalyzes the adenylation reaction with substrate amino acids and ATP. Leveraging the distinct substrate specificity of A-domains, we previously developed photoaffinity probes for A-domains based on derivatization with a 5'-O-N-(aminoacyl)sulfamoyl adenosine (aminoacyl-AMS)-appended clickable benzophenone. Although our photoaffinity probes with different amino acid warheads enabled selective detection, visualization, and enrichment of target A-domains in proteomic environments, the effects of photoaffinity linkers have not been investigated. To explore the optimal benzophenone-based linker scaffold, we designed seven photoaffinity probes for the A-domains with different lengths, positions, and molecular shapes. Using probes 2-8 for the phenylalanine-activating A-domain of gramicidin S synthetase A (GrsA), we systematically investigated the binding affinity and labeling efficiency of the endogenous enzyme in a live producer cell. Our results indicated that the labeling efficiencies of probes 2-8 tended to depend on their binding affinities rather than on the linker length, flexibility, or position of the photoaffinity group. We also identified that probe 2 with a 4,4'-diaminobenzophenone linker exhibits the highest labeling efficiency for GrsA with fewer non-target labeling properties in live cells.


Assuntos
Benzofenonas , Peptídeo Sintases , Marcadores de Fotoafinidade , Benzofenonas/química , Benzofenonas/síntese química , Benzofenonas/farmacologia , Benzofenonas/metabolismo , Marcadores de Fotoafinidade/química , Marcadores de Fotoafinidade/síntese química , Peptídeo Sintases/metabolismo , Peptídeo Sintases/química , Estrutura Molecular
2.
Ecotoxicol Environ Saf ; 274: 116217, 2024 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-38489904

RESUMO

The aim of this study is to conduct a thorough evaluation of the association between Benzophenone-3 (BP-3) exposure and OA, offering critical insights into the underlying mechanisms involved. The National Health and Nutrition Examination Survey (NHANES) database was utilized to investigate the correlation between BP-3 and osteoarthritis. Proteomic sequencing from clinical sample and the PharmMapper online tool were employed to predict the biological target of BP-3. Cellular molecular assays and transfection studies were performed to verify the prediction from bioinformatics analyses. Through cross-sectional analysis of the NHANES database, we identified BP-3 as a risk factor for OA development. The results of proteomic sequencing showed that Secreted Protein Acidic and Rich in Cysteine (SPARC) was significantly elevated in the area of damage compared to the undamaged area. SPARC was also among the potential biological targets of BP-3 predicted by the online program. Through in vitro cell experiments, we further determined that the toxicological effects of BP-3 may be due to SPARC, which elevates intracellular GPX4 levels, activates the glutathione system, and promotes lipid peroxidation to mitigate ferroptosis. Inhibiting SPARC expression has been shown to reduce inflammation and ferroptosis in OA contexts. This research provides an expansive understanding of BP-3's influence on osteoarthritis development. We have identified SPARC as a potent target for combating chondrocyte ferroptosis in BP-3-associated osteoarthritis.


Assuntos
Benzofenonas , Ferroptose , Osteoartrite , Osteonectina , Humanos , Benzofenonas/metabolismo , Benzofenonas/toxicidade , Biologia Computacional , Estudos Transversais , Ferroptose/efeitos dos fármacos , Inquéritos Nutricionais , Osteoartrite/induzido quimicamente , Osteonectina/antagonistas & inibidores , Osteonectina/genética , Osteonectina/metabolismo , Proteômica
3.
Phytochem Anal ; 35(3): 445-468, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38069552

RESUMO

INTRODUCTION: The genus Clusia L. is mostly recognised for the production of prenylated benzophenones and tocotrienol derivatives. OBJECTIVES: The objective of this study was to map metabolome variation within Clusia minor organs at different developmental stages. MATERIAL AND METHODS: In total 15 organs/stages (leaf, flower, fruit, and seed) were analysed by UPLC-MS and 1H- and heteronuclear multiple-bond correlation (HMBC)-NMR-based metabolomics. RESULTS: This work led to the assignment of 46 metabolites, belonging to organic acids(1), sugars(2) phenolic acids(1), flavonoids(3) prenylated xanthones(1) benzophenones(4) and tocotrienols(2). Multivariate data analyses explained the variability and classification of samples, highlighting chemical markers that discriminate each organ/stage. Leaves were found to be rich in 5-hydroxy-8-methyltocotrienol (8.5 µg/mg f.w.), while flowers were abundant in the polyprenylated benzophenone nemorosone with maximum level detected in the fully mature flower bud (43 µg/mg f.w.). Nemorosone and 5-hydroxy tocotrienoloic acid were isolated from FL6 for full structural characterisation. This is the first report of the NMR assignments of 5-hydroxy tocotrienoloic acid, and its maximum level was detected in the mature fruit at 50 µg/mg f.w. Seeds as typical storage organ were rich in sugars and omega-6 fatty acids. CONCLUSION: To the best of our knowledge, this is the first report on a comparative 1D-/2D-NMR approach to assess compositional differences in ontogeny studies compared with LC-MS exemplified by Clusia organs. Results derived from this study provide better understanding of the stages at which maximal production of natural compounds occur and elucidate in which developmental stages the enzymes responsible for the production of such metabolites are preferentially expressed.


Assuntos
Clusia , Clusia/química , Frutas/química , Cromatografia Líquida , Espectrometria de Massas em Tandem , Benzofenonas/análise , Benzofenonas/química , Benzofenonas/metabolismo , Flores/química , Folhas de Planta/química , Metabolômica/métodos , Sementes/química , Açúcares/análise
4.
Int J Mol Sci ; 22(21)2021 Oct 23.
Artigo em Inglês | MEDLINE | ID: mdl-34768882

RESUMO

Benzophenone-3 (BP-3) is one of the most widely used chemical sunscreens. The results of many in vitro and in vivo tests confirm its high percutaneous penetration and systemic absorption, which question the safety of its wide use. The aim of our research was to assess the effect of this compound on components of the skin extracellular matrix, and to investigate whether rosmarinic acid (RA) could reduce BP-3-induced changes in human skin fibroblasts. BP-3 used at concentrations of 0.1-100 µM caused a number of unfavorable changes in the level of type I collagen, decorin, sulfated glycosaminoglycans, hyaluronic acid, elastin, and expression or activity of matrix metalloproteinases (MMP-1, MMP-2), elastase and hyaluronidase. Moreover, the intracellular retention of collagen was accompanied by changes in the expression of proteins modifying and controlling the synthesis and secretion of this protein. Most importantly, RA at a concentration of 100 µM significantly reduced or completely abolished the adverse effects of BP-3. Based on these findings, it can be concluded that this polyphenol may provide effective protection against BP-3-induced disturbances in skin cells, which may have important clinical implications.


Assuntos
Benzofenonas/efeitos adversos , Cinamatos/farmacologia , Depsídeos/farmacologia , Fibroblastos/metabolismo , Benzofenonas/metabolismo , Linhagem Celular , Células Cultivadas , Cinamatos/metabolismo , Colágeno/efeitos dos fármacos , Colágeno/metabolismo , Decorina/metabolismo , Depsídeos/metabolismo , Elastina/metabolismo , Matriz Extracelular/efeitos dos fármacos , Matriz Extracelular/metabolismo , Fibroblastos/efeitos dos fármacos , Glicosaminoglicanos/metabolismo , Humanos , Hialuronoglucosaminidase/metabolismo , Metaloproteinases da Matriz/metabolismo , Pele/efeitos dos fármacos , Pele/metabolismo , Ácido Rosmarínico
5.
Acta Crystallogr D Struct Biol ; 77(Pt 10): 1292-1304, 2021 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-34605432

RESUMO

The mutual penetration of electron densities between two interacting molecules complicates the computation of an accurate electrostatic interaction energy based on a pseudo-atom representation of electron densities. The numerical exact potential and multipole moment (nEP/MM) method is time-consuming since it performs a 3D integration to obtain the electrostatic energy at short interaction distances. Nguyen et al. [(2018), Acta Cryst. A74, 524-536] recently reported a fully analytical computation of the electrostatic interaction energy (aEP/MM). This method performs much faster than nEP/MM (up to two orders of magnitude) and remains highly accurate. A new program library, Charger, contains an implementation of the aEP/MM method. Charger has been incorporated into the MoProViewer software. Benchmark tests on a series of small molecules containing only C, H, N and O atoms show the efficiency of Charger in terms of execution time and accuracy. Charger is also powerful in a study of electrostatic symbiosis between a protein and a ligand. It determines reliable protein-ligand interaction energies even when both contain S atoms. It easily estimates the individual contribution of every residue to the total protein-ligand electrostatic binding energy. Glutathione transferase (GST) in complex with a benzophenone ligand was studied due to the availability of both structural and thermodynamic data. The resulting analysis highlights not only the residues that stabilize the ligand but also those that hinder ligand binding from an electrostatic point of view. This offers new perspectives in the search for mutations to improve the interaction between the two partners. A proposed mutation would improve ligand binding to GST by removing an electrostatic obstacle, rather than by the traditional increase in the number of favourable contacts.


Assuntos
Benzofenonas/metabolismo , Glutationa Transferase/metabolismo , Modelos Moleculares , Polyporaceae/enzimologia , Software , Eletricidade Estática , Termodinâmica , Benzofenonas/química , Glutationa Transferase/química , Ligação de Hidrogênio , Ligantes
6.
Chem Res Toxicol ; 34(4): 1046-1054, 2021 04 19.
Artigo em Inglês | MEDLINE | ID: mdl-33682414

RESUMO

Benzophenone is a mutagen, carcinogen, and endocrine disruptor. Its presence in food products or food packaging is banned in the United States. Under California Proposition 65, there is no safe harbor for benzophenone in any personal care products, including sunscreens, anti-aging creams, and moisturizers. The purpose of this study was to determine (1) if benzophenone was present in a wide variety of commercial sun protection factor (SPF)/sunscreen products, (2) whether benzophenone concentration in the product increased over time, and (3) if the degradation of octocrylene was the likely source for benzophenone contamination. Benzophenone concentration was assayed in nine commercial sunscreen products from the European Union and eight from the United States (in triplicate), including two single ingredient sources of octocrylene. These same SPF items were subjected to the United States Food and Drug Administration (U.S. FDA)-accelerated stability aging protocol for 6 weeks. Benzophenone was measured in the accelerated-aged products. Sixteen octocrylene-containing product lines that were recently purchased had an average concentration of 39 mg/kg benzophenone, ranging from 6 mg/kg to 186 mg/kg. Benzophenone was not detectable in the product that did not contain octocrylene. After subjecting the 17 products to the U.S. FDA-accelerated stability method, the 16 octocrylene-containing products had an average concentration of 75 mg/kg, ranging from 9.8 mg/kg to 435 mg/kg. Benzophenone was not detectable in the product that did not contain octocrylene. Benzophenone was detected in the pure octocrylene manufactured ingredient. Octocrylene generates benzophenone through a retro-aldol condensation. In vivo, up to 70% of the benzophenone in these sunscreen products may be absorbed through the skin. U.S. FDA has established a zero tolerance for benzophenone as a food additive. In the United States, there were 2999 SPF products containing octocrylene in 2019. The safety of octocrylene as a benzophenone generator in SPF or any consumer products should be expeditiously reviewed by regulatory agencies.


Assuntos
Acrilatos/metabolismo , Benzofenonas/metabolismo , Protetores Solares/metabolismo , Acrilatos/química , Benzofenonas/química , Contaminação de Alimentos/análise , Humanos , Estrutura Molecular , Protetores Solares/química , Fatores de Tempo , Estados Unidos
7.
Cell Chem Biol ; 27(1): 74-82.e6, 2020 01 16.
Artigo em Inglês | MEDLINE | ID: mdl-31859248

RESUMO

Activity-based protein profiling is an invaluable technique for studying enzyme biology and facilitating the development of therapeutics. Ubiquitin E3 ligases (E3s) are one of the largest enzyme families and regulate a host of (patho)physiological processes. The largest subtype are the RING E3s of which there are >600 members. RING E3s have adaptor-like activity that can be subject to diverse regulatory mechanisms and have become attractive drug targets. Activity-based probes (ABPs) for measuring RING E3 activity do not exist. Here we re-engineer ubiquitin-charged E2 conjugating enzymes to produce photocrosslinking ABPs. We demonstrate activity-dependent profiling of two divergent cancer-associated RING E3s, RNF4 and c-Cbl, in response to their native activation signals. We also demonstrate profiling of endogenous RING E3 ligase activation in response to epidermal growth factor (EGF) stimulation. These photocrosslinking ABPs should advance E3 ligase research and the development of selective modulators against this important class of enzymes.


Assuntos
Benzofenonas/química , Reagentes de Ligações Cruzadas/química , Fenilalanina/análogos & derivados , Ubiquitina-Proteína Ligases/metabolismo , Benzofenonas/metabolismo , Reagentes de Ligações Cruzadas/metabolismo , Humanos , Modelos Moleculares , Conformação Molecular , Fenilalanina/química , Fenilalanina/metabolismo , Processos Fotoquímicos , Enzimas de Conjugação de Ubiquitina/química , Enzimas de Conjugação de Ubiquitina/metabolismo , Ubiquitina-Proteína Ligases/química
8.
Xenobiotica ; 50(2): 192-208, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-30888238

RESUMO

1. Cyclic phenones are chemicals of interest to the USEPA due to their potential for endocrine disruption to aquatic and terrestrial species.2. Prior to this report, there was very limited information addressing metabolism of cyclic phenones by fish species and the potential for estrogen receptor (ER) binding and vitellogenin (Vtg) gene activation by their metabolites.3. The main objectives of the current research were to characterize rainbow trout (rt) liver slice-mediated in vitro metabolism of model parent cyclic phenones exhibiting disparity between ER binding and ER-mediated Vtg gene induction, and to assess the metabolic competency of fish liver in vitro tests to help determine the chemical form (parent and/or metabolite) associated with the observed biological response.4. GC-MS, HPLC and LC-MS/MS technologies were applied to investigate the in vitro biotransformation of cyclobutyl phenyl ketone (CBP), benzophenone (DPK), cyclohexyl phenyl ketone (CPK) mostly in the absence of standards for metabolite characterization.5. It was concluded that estrogenic effects of the studied cyclic phenones are mediated by the parent chemical structure for DPK, but by active metabolites for CPK. A definitive interpretation was not possible for CBP and CBPOH (alcohol), although a contribution of both structures to gene induction is suspected.


Assuntos
Benzofenonas/metabolismo , Disruptores Endócrinos/metabolismo , Oncorhynchus mykiss/metabolismo , Animais , Cromatografia Líquida , Estrogênios , Espectrometria de Massas em Tandem , Vitelogeninas
9.
Environ Int ; 133(Pt A): 105118, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31610369

RESUMO

The aim was to evaluate the associations of environmental phenol and paraben concentrations with the oxidative microenvironment in adipose tissue. This study was conducted in a subsample (n = 144) of the GraMo cohort (Southern Spain). Concentrations of 9 phenols and 7 parabens, and levels of oxidative stress biomarkers were quantified in adipose tissue. Associations were estimated using multivariable linear regression analyses adjusted for potential confounders. Benzophenone-3 (BP-3) concentration was borderline associated with enhanced glutathione peroxidase (GPx) activity [exp(ß) = 1.20, p = 0.060] and decreased levels of reduced glutathione (GSH) [exp(ß) = 0.55, p = 0.070]. Concentrations of bisphenol A (BPA) and methylparaben (MeP) were associated to lower glutathione reductase (GRd) activity [exp(ß) = 0.83, exp(ß) = 0.72, respectively], and BPA was borderline associated to increased levels of oxidized glutathione (GSSG) [exp(ß) = 1.73, p-value = 0.062]. MeP was inversely associated to both hemeoxygenase-1 (HO-1) and superoxide dismustase (SOD) activity, as well as to the levels of thiobarbituric acid reactive substances (TBARS) [0.75 < exp(ß) < 0.79]. Our results suggest that some specific non-persistent pollutants may be associated with a disruption of the activity of relevant antioxidant enzymes, in addition to the depletion of the glutathione stock. They might act as a tissue-specific source of free radicals, contributing to the oxidative microenvironment in the adipose tissue.


Assuntos
Tecido Adiposo/metabolismo , Poluentes Ambientais/metabolismo , Fenóis/metabolismo , Adulto , Antioxidantes/metabolismo , Compostos Benzidrílicos/metabolismo , Benzofenonas/metabolismo , Biomarcadores/metabolismo , Estudos de Coortes , Feminino , Radicais Livres/metabolismo , Glutationa/metabolismo , Glutationa Peroxidase , Humanos , Masculino , Pessoa de Meia-Idade , Oxirredução , Estresse Oxidativo , Parabenos/metabolismo , Espanha , Substâncias Reativas com Ácido Tiobarbitúrico
10.
Biochem Biophys Res Commun ; 512(1): 100-105, 2019 04 23.
Artigo em Inglês | MEDLINE | ID: mdl-30871775

RESUMO

Protein-protein interaction, including protein homo-oligomerization, is commonly believed to occur through a specific interface made of a limited number of amino acid residues. Here our systematic in vivo photo-crosslinking analysis via genetically incorporated unnatural amino acids unexpectedly shows that the dimerization of HdeA, an acid stress chaperone, is mediated by the residues along its whole polypeptide. These include those "forbidden" residues that are far away from the dimerization interface as judged according to the reported 3-D structure. We demonstrate that such dimerization, though intriguing, is neither a result of protein over-expression nor of any structural disturbance caused by the residue replacement. Similar unexpected dimerization also occurs for two other oligomeric proteins, IbpB (a molecular chaperone existing as polydispersed oligomers in vitro) and DegP (a protease existing as hexamers in vitro). In contrast to these three proteins, dimerization of a few other oligomeric proteins (e.g., OmpF, LamB, SurA, FtsZ and FkpA) that we similarly examined in living cells seems to be mediated only by specific residues. Together, our unexpected observations suggest that, for some oligomeric proteins such as HdeA, IbpB and DegP, their subunit interactions in living cells can also be mediated by residues other than those located at the interfaces as revealed by in vitro structure determination. Our observations might be partially explained by the formation of "encounter complex" or by protein conformational dynamics. Our findings provide new insights on understanding protein-protein interactions and encounter complex formation in living cells.


Assuntos
Proteínas de Escherichia coli/química , Domínios e Motivos de Interação entre Proteínas , Benzofenonas/química , Benzofenonas/metabolismo , Reagentes de Ligações Cruzadas , Diazometano/análogos & derivados , Diazometano/química , Diazometano/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Proteínas de Choque Térmico/química , Proteínas de Choque Térmico/genética , Proteínas de Choque Térmico/metabolismo , Lisina/análogos & derivados , Lisina/química , Lisina/metabolismo , Modelos Moleculares , Simulação de Dinâmica Molecular , Mutação , Proteínas Periplásmicas/química , Proteínas Periplásmicas/genética , Proteínas Periplásmicas/metabolismo , Fenilalanina/análogos & derivados , Fenilalanina/química , Fenilalanina/metabolismo , Multimerização Proteica , Estrutura Quaternária de Proteína , Subunidades Proteicas , Serina Endopeptidases/química , Serina Endopeptidases/genética , Serina Endopeptidases/metabolismo
11.
Sci Rep ; 8(1): 8472, 2018 05 31.
Artigo em Inglês | MEDLINE | ID: mdl-29855494

RESUMO

Wood decay fungi have complex detoxification systems that enable them to cope with secondary metabolites produced by plants. Although the number of genes encoding for glutathione transferases is especially expanded in lignolytic fungi, little is known about their target molecules. In this study, by combining biochemical, enzymatic and structural approaches, interactions between polyphenols and six glutathione transferases from the white-rot fungus Trametes versicolor have been demonstrated. Two isoforms, named TvGSTO3S and TvGSTO6S have been deeply studied at the structural level. Each isoform shows two distinct ligand-binding sites, a narrow L-site at the dimer interface and a peculiar deep hydrophobic H-site. In TvGSTO3S, the latter appears optimized for aromatic ligand binding such as hydroxybenzophenones. Affinity crystallography revealed that this H-site retains the flavonoid dihydrowogonin from a partially purified wild-cherry extract. Besides, TvGSTO6S binds two molecules of the flavonoid naringenin in the L-site. These data suggest that TvGSTO isoforms could interact with plant polyphenols released during wood degradation.


Assuntos
Proteínas Fúngicas/química , Glutationa Transferase/química , Desintoxicação Metabólica Fase II , Polifenóis/química , Trametes/metabolismo , Madeira/química , Sequência de Aminoácidos , Benzofenonas/química , Benzofenonas/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Flavonoides/química , Flavonoides/metabolismo , Proteínas Fúngicas/metabolismo , Glutationa Transferase/metabolismo , Isoenzimas/química , Isoenzimas/metabolismo , Cinética , Polifenóis/metabolismo , Estabilidade Proteica , Estrutura Terciária de Proteína , Prunus/química , Prunus/metabolismo , Alinhamento de Sequência , Temperatura , Madeira/metabolismo
12.
J Neurosci ; 37(50): 12272-12280, 2017 12 13.
Artigo em Inglês | MEDLINE | ID: mdl-29118109

RESUMO

γ-Secretase is an intramembrane cleaving protease that is responsible for the generation of amyloid-ß peptides, which are linked to the pathogenesis of Alzheimer disease. Recently, γ-secretase modulators (GSMs) have been shown to specifically decrease production of the aggregation-prone and toxic longer Aß species, and concomitantly increase the levels of shorter Aß. We previously found that phenylimidazole-type GSMs bind to presenilin 1 (PS1), the catalytic subunit of the γ-secretase, and allosterically modulate γ-secretase activity. However, the precise conformational alterations in PS1 remained unclear. Here we mapped the amino acid residues in PS1 that is crucial for the binding and pharmacological actions of E2012, a phenylimidazole-type GSM, using photoaffinity labeling and the substituted cysteine accessibility method. We also demonstrated that a piston-like vertical motion of transmembrane domain (TMD) 1 occurs during modulation of Aß production. Taking these results together, we propose a model for the molecular mechanism of phenylimidazole-type GSMs, in which the trimming activity of γ-secretase is modulated by the position of the TMD1 of PS1 in the lipid bilayer.SIGNIFICANCE STATEMENT Reduction of the toxic longer amyloid-ß peptide is one of the therapeutic approaches for Alzheimer disease. A subset of small compounds called γ-secretase modulators specifically decreases the longer amyloid-ß production, although its mechanistic action remains unclear. Here we found that the modulator compound E2012 targets to the hydrophilic loop 1 of presenilin 1, which is a catalytic subunit of the γ-secretase. Moreover, E2012 triggers the piston movement of the transmembrane domain 1 of presenilin 1, which impacts on the γ-secretase activity. These results illuminate how γ-secretase modulators allosterically affect the proteolytic activity, and highlight the importance of the structural dynamics of presenilin 1 in the complexed process of the intramembrane cleavage.


Assuntos
Secretases da Proteína Precursora do Amiloide/química , Precursor de Proteína beta-Amiloide/metabolismo , Modelos Químicos , Presenilina-1/química , Sequência de Aminoácidos , Secretases da Proteína Precursora do Amiloide/metabolismo , Precursor de Proteína beta-Amiloide/genética , Animais , Benzofenonas/metabolismo , Sítios de Ligação , Biotina/análogos & derivados , Biotina/metabolismo , Feminino , Humanos , Imidazóis/metabolismo , Bicamadas Lipídicas , Masculino , Camundongos , Microssomos/metabolismo , Movimento (Física) , Mutação , Marcadores de Fotoafinidade , Piperidinas/metabolismo , Presenilina-1/genética , Presenilina-1/metabolismo , Ligação Proteica , Domínios Proteicos , Processamento de Proteína Pós-Traducional , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo
13.
Org Lett ; 19(8): 2066-2069, 2017 04 21.
Artigo em Inglês | MEDLINE | ID: mdl-28387122

RESUMO

Asperphenins A (1) and B (2), novel diastereomeric lipopeptidyl benzophenone metabolites, were isolated from a marine-derived Aspergillus sp. fungus. On the basis of the results of combined spectroscopic analyses, the structures of these compounds were determined to be linear assemblies of three motifs: a hydroxy fatty acid, a tripeptide, and a trihydroxybenzophenone. The absolute configurations were assigned using chemical modifications and electronic circular dichroism (ECD) calculations. The novel compounds exhibited significant cytotoxicity on diverse cancer cells.


Assuntos
Aspergillus/química , Benzofenonas/metabolismo , Lipopeptídeos/metabolismo , Antineoplásicos/química , Antineoplásicos/metabolismo , Antineoplásicos/farmacologia , Benzofenonas/química , Benzofenonas/farmacologia , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Sobrevivência Celular/efeitos dos fármacos , Humanos , Lipopeptídeos/química , Lipopeptídeos/farmacologia , Conformação Molecular , Metabolismo Secundário
14.
Bioorg Med Chem Lett ; 27(3): 636-641, 2017 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-28007448

RESUMO

A variety of solid tumor cancers contain significant regions of hypoxia, which provide unique challenges for targeting by potent anticancer agents. Bioreductively activatable prodrug conjugates (BAPCs) represent a promising strategy for therapeutic intervention. BAPCs are designed to be biologically inert until they come into contact with low oxygen tension, at which point reductase enzyme mediated cleavage releases the parent anticancer agent in a tumor-specific manner. Phenstatin is a potent inhibitor of tubulin polymerization, mimicking the chemical structure and biological activity of the natural product combretastatin A-4. Synthetic approaches have been established for nitrobenzyl, nitroimidazole, nitrofuranyl, and nitrothienyl prodrugs of phenstatin incorporating nor-methyl, mono-methyl, and gem-dimethyl variants of the attached nitro compounds. A series of BAPCs based on phenstatin have been prepared by chemical synthesis and evaluated against the tubulin-microtubule protein system. In a preliminary study using anaerobic conditions, the gem-dimethyl nitrothiophene and gem-dimethyl nitrofuran analogues were shown to undergo efficient enzymatic cleavage in the presence of NADPH cytochrome P450 oxidoreductase. Each of the eleven BAPCs evaluated in this study demonstrated significantly reduced inhibitory activity against tubulin in comparison to the parent anti-cancer agent phenstatin (IC50=1.0µM). In fact, the majority of the BAPCs (seven of the eleven analogues) were not inhibitors of tubulin polymerization (IC50>20µM), which represents an anticipated (and desirable) attribute for these prodrugs, since they are intended to be biologically inactive prior to enzyme-mediated cleavage to release phenstatin.


Assuntos
Benzofenonas/química , Benzofenonas/farmacologia , Pró-Fármacos/química , Pró-Fármacos/farmacologia , Hipóxia Tumoral/efeitos dos fármacos , Benzofenonas/metabolismo , Humanos , Concentração Inibidora 50 , Pró-Fármacos/metabolismo , Ligação Proteica , Tubulina (Proteína)/química , Tubulina (Proteína)/metabolismo , Moduladores de Tubulina/química , Moduladores de Tubulina/metabolismo , Moduladores de Tubulina/farmacologia
15.
ACS Chem Neurosci ; 7(8): 1166-73, 2016 08 17.
Artigo em Inglês | MEDLINE | ID: mdl-27253220

RESUMO

γ-Secretase is a multiprotein complex that catalyzes intramembrane proteolysis associated with Alzheimer's disease and cancer. Here, we have developed potent sulfonamide clickable photoaffinity probes that target γ-secretase in vitro and in cells by incorporating various photoreactive groups and walking the clickable alkyne handle to different positions around the molecule. We found that benzophenone is preferred over diazirine as a photoreactive group within the sulfonamide scaffold for labeling γ-secretase. Intriguingly, the placement of the alkyne at different positions has little effect on probe potency but has a significant impact on the efficiency of labeling of γ-secretase. Moreover, the optimized clickable photoprobe, 163-BP3, was utilized as a cellular probe to effectively assess the target engagement of inhibitors with γ-secretase in primary neuronal cells. In addition, biotinylated 163-BP3 probes were developed and used to capture the native γ-secretase complex in the 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonate (CHAPSO) solubilized state. Taken together, these next generation clickable and biotinylated sulfonamide probes offer new tools to study γ-secretase in biochemical and cellular systems. Finally, the data provide insights into structural features of the sulfonamide inhibitor binding site in relation to the active site and into the design of clickable photoaffinity probes.


Assuntos
Secretases da Proteína Precursora do Amiloide/metabolismo , Domínio Catalítico/efeitos dos fármacos , Neurônios/efeitos dos fármacos , Neurônios/enzimologia , Sulfonamidas/farmacologia , Peptídeos beta-Amiloides/metabolismo , Animais , Benzofenonas/metabolismo , Sítios de Ligação/efeitos dos fármacos , Biotinilação , Células Cultivadas , Córtex Cerebral/citologia , Ácidos Cólicos/metabolismo , Diazometano/metabolismo , Células HeLa , Humanos , Fragmentos de Peptídeos/metabolismo , Marcadores de Fotoafinidade , Presenilina-1/metabolismo , Especificidade por Substrato
16.
Environ Sci Process Impacts ; 18(2): 237-45, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26745785

RESUMO

Photochemical reactions involving a variety of photosensitizers contribute to the abiotic transformation of pesticides in prairie pothole lakes (PPLs). Despite the fact that triplet excited state dissolved organic matter (DOM) enhances phototransformation of pesticides by acting as a photosensitizer, it may also decrease the overall phototransformation rate through various mechanisms. In this study, the effect of DOM on the phototransformation of four commonly applied pesticides in four different PPL waters was investigated under simulated sunlight using photoexcited benzophenone-4-carboxylate as the oxidant with DOM serving as an anti-oxidant. For atrazine and mesotrione, a decrease in phototransformation rates was observed, while phototransformations of metolachlor and isoproturon were not affected by DOM inhibition. Phototransformation rates and the extent of inhibition/enhancement by DOM varied spatially and temporally across the wetlands studied. Characterization of DOM from the sites and different seasons suggested that the DOM type and variations in the DOM structure are important factors controlling phototransformation rates of pesticides in PPLs.


Assuntos
Benzofenonas/metabolismo , Compostos Orgânicos/metabolismo , Praguicidas/metabolismo , Luz Solar , Poluentes Químicos da Água/metabolismo , Biodegradação Ambiental , Pradaria , Lagos , Oxirredução , Áreas Alagadas
17.
Biomed Pharmacother ; 75: 93-9, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26463637

RESUMO

The leishmanicidal potential of benzophenones has been described, some of them highlighting their potential as cysteine protease inhibitors. Therefore, this work described leishmanicidal activity of nine benzophenone derivatives (1a-c;2a-c;3a-c) against intramacrophage amastigote forms of Leishmania(L.)amazonensis (IC50) and the cytotoxic effect on murine peritoneal macrophages (CC50). The derivative 1c exhibited a selectivity index SI (CC50/IC50) of 6.7, besides cytotoxicity lower than Amphotericin B (p< 0.05). Moreover it showed inhibitory activity against papain (42.8±0.3, p<0.05), and when tested on trypanosomatids cysteine proteases 1c also proved to be a potent inhibitor of rCPB2.8, rCPB3.0 and cruzain, showing non-competitive inhibition mechanism by enzymatic assays in vitro.So, benzophenone 1c is interesting drug candidate prototype, with a multi-target directed mode of action, inhibiting rCPB2.8, rCPB3.0 and cruzain.


Assuntos
Benzofenonas/farmacologia , Cisteína Endopeptidases/metabolismo , Inibidores de Cisteína Proteinase/farmacologia , Leishmania/efeitos dos fármacos , Macrófagos Peritoneais/efeitos dos fármacos , Proteínas de Protozoários/antagonistas & inibidores , Tripanossomicidas/farmacologia , Animais , Benzofenonas/metabolismo , Ligação Competitiva , Sobrevivência Celular/efeitos dos fármacos , Células Cultivadas , Inibidores de Cisteína Proteinase/metabolismo , Relação Dose-Resposta a Droga , Cinética , Leishmania/enzimologia , Leishmania/crescimento & desenvolvimento , Macrófagos Peritoneais/patologia , Camundongos , Papaína/antagonistas & inibidores , Papaína/metabolismo , Ligação Proteica , Proteínas de Protozoários/metabolismo , Tripanossomicidas/metabolismo
18.
Lipids ; 50(8): 773-84, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26123692

RESUMO

The effect of an inhibitor of cycloartenol synthase (CAS, EC 5.4.99.8) on the proteome of tobacco BY-2 cells has been examined. CAS catalyzes the first committed step in phytosterol synthesis in plants. BY-2 cells were treated with RO 48-8071, a potent inhibitor of oxidosqualene cyclization. Proteins were separated by two-dimensional electrophoresis and spots, that clearly looked differentially accumulated after visual inspection, were cut, in-gel trypsin digested, and peptides were analyzed by nano-HPLC-MS/MS. Distinct peptides were compared to sequences in the data banks and attributed to corresponding proteins and genes. Inhibition of CAS induced proteins that appear to mitigate the negative effects of the chemical exposure. However, as all enzymes that are directly involved in phytosterol biosynthesis are low-abundant proteins, significant changes in their levels could not be observed. Differences could be seen with enzymes involved in primary metabolism (glycolysis, pentose phosphate pathway etc.), in proteins of the chaperonin family, and those, like actin, that participate in formation and strengthening of the cytoskeleton and have some impact on cell growth and division.


Assuntos
Transferases Intramoleculares/antagonistas & inibidores , Transferases Intramoleculares/metabolismo , Nicotiana/efeitos dos fármacos , Nicotiana/metabolismo , Proteínas de Plantas/metabolismo , Benzofenonas/metabolismo , Linhagem Celular , Cromatografia Líquida de Alta Pressão , Eletroforese em Gel Bidimensional , Fitosteróis/metabolismo , Proteínas de Plantas/antagonistas & inibidores , Proteômica , Espectrometria de Massas em Tandem
19.
Lipids ; 50(8): 761-72, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26033687

RESUMO

Tobacco BY-2 cell suspensions are our preferred model for studying isoprenoid biosynthesis pathways, due to their easy genetic transformation and the efficient absorption of metabolic precursors, intermediates, and/or inhibitors. Using this model system, we have analyzed the effects of chemical and genetic blockage of cycloartenol synthase (CAS, EC 5.4.99.8), an oxidosqualene cyclase that catalyzes the first committed step in the sterol pathway of plants. BY-2 cells were treated with RO 48-8071, a potent inhibitor of oxidosqualene cyclization. Short-term treatments (24 h) resulted in accumulation of oxidosqualene with no changes in the final sterol products. Interestingly, long-term treatments (6 days) induced down-regulation in gene expression not only of CAS but also of the SMT2 gene coding sterol methyltransferase 2 (EC 2.1.1.41). This explains some of the increase in 24-methyl sterols at the expense of the 24-ethyl sterols stigmasterol and sitosterol. In our alternative strategy, CAS gene expression was partially blocked by using an inducible artificial microRNA. The limited effectiveness of this approach might be explained by some dependence of the machinery for RNAi formation on an operating MVA/sterol pathway. For comparison we checked the effect of RO 48-8071 on a green cell suspension of Arabidopsis and on seedlings, containing a small spectrum of triterpenes besides phytosterols. Triterpenes remained essentially unaffected, but phytosterol accumulation was clearly diminished.


Assuntos
Transferases Intramoleculares/metabolismo , Nicotiana/metabolismo , Proteínas de Plantas/metabolismo , Esteróis/metabolismo , Arabidopsis/genética , Arabidopsis/metabolismo , Benzofenonas/metabolismo , Vias Biossintéticas , Linhagem Celular , Inativação Gênica , Transferases Intramoleculares/antagonistas & inibidores , Transferases Intramoleculares/genética , Proteínas de Plantas/antagonistas & inibidores , Proteínas de Plantas/genética , Esqualeno/análogos & derivados , Esqualeno/análise , Esqualeno/metabolismo , Esteróis/análise , Nicotiana/efeitos dos fármacos , Nicotiana/genética
20.
Environ Sci Technol ; 49(6): 3860-8, 2015 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-25679259

RESUMO

Several human and fish bioassays have been designed to characterize the toxicity and the estrogenic activity of chemicals. However, their biotransformation capability (bioactivation/detoxification processes) is rarely reported, although this can influence the estrogenic potency of test compounds. The fate of two estrogenic chemicals, the UV filter benzophenone-2 (BP2) and the bisphenol A substitute bisphenol S (BPS) was deciphered in eight human and zebrafish in vitro cell models, encompassing hepatic and mammary cellular contexts. BP2 and BPS were metabolized into a variety of gluco- and sulfo-conjugated metabolites. Similar patterns of BP2 and BPS biotransformation were observed among zebrafish models (primary hepatocytes, ZFL and ZELH-zfER cell lines). Interestingly, metabolic patterns in zebrafish models and in the human hepatic cell line HepaRG shared many similarities, while biotransformation rates in cell lines widely used for estrogenicity testing (MELN and T47D-KBLuc) were quantitatively low and qualitatively different. This study provides new data on the comparative metabolism of BP2 and BPS in human and fish cellular models that will help characterize their metabolic capabilities, and underlines the relevance of using in vitro zebrafish-based bioassays when screening for endocrine disrupting chemicals.


Assuntos
Benzofenonas/metabolismo , Estrogênios/toxicidade , Hepatócitos/metabolismo , Fenóis/metabolismo , Sulfonas/metabolismo , Peixe-Zebra/metabolismo , Animais , Biotransformação/efeitos dos fármacos , Bovinos , Linhagem Celular , Cromatografia Líquida de Alta Pressão , Hepatócitos/efeitos dos fármacos , Humanos , Fígado/metabolismo
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