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1.
Sci Rep ; 7(1): 4296, 2017 06 27.
Artigo em Inglês | MEDLINE | ID: mdl-28655887

RESUMO

Caenorhabditis briggsae has emerged as a model for comparative biology against model organism C. elegans. Most of its cell fate specifications are completed during embryogenesis whereas its cell growth is achieved mainly in larval stages. The molecular mechanism underlying the drastic developmental changes is poorly understood. To gain insights into the molecular changes between the two stages, we compared the proteomes between the two stages using iTRAQ. We identified a total of 2,791 proteins in the C. briggsae embryos and larvae, 247 of which undergo up- or down-regulation between the two stages. The proteins that are upregulated in the larval stages are enriched in the Gene Ontology categories of energy production, protein translation, and cytoskeleton; whereas those upregulated in the embryonic stage are enriched in the categories of chromatin dynamics and posttranslational modification, suggesting a more active chromatin modification in the embryos than in the larva. Perturbation of a subset of chromatin modifiers followed by cell lineage analysis suggests their roles in controlling cell division pace. Taken together, we demonstrate a general molecular switch from chromatin modification to metabolism during the transition from C. briggsae embryonic to its larval stages using iTRAQ approach. The switch might be conserved across metazoans.


Assuntos
Caenorhabditis/metabolismo , Divisão Celular , Cromatina/metabolismo , Proteoma , Proteômica , Animais , Divisão Celular/genética , Biologia Computacional/métodos , Curadoria de Dados , Desenvolvimento Embrionário/genética , Ontologia Genética , Larva , Espectrometria de Massas , Peptídeos/metabolismo , Fenótipo , Proteômica/métodos , Interferência de RNA
2.
PLoS One ; 8(3): e58893, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23520540

RESUMO

The presence of amyloid aggregates of the 42 amino acid peptide of amyloid beta (Aß42) in the brain is the characteristic feature of Alzheimer's disease (AD). Amyloid beta (Aß deposition is also found in muscle fibers of individuals affected by inclusion body myositis (sIBM), a rare muscular degenerative disease affecting people over 50. Both conditions are presently lacking an effective therapeutic treatment. There is increasing evidence to suggest that natural polyphenols may prevent the formation of toxic amyloid aggregates; this applies also to oleuropein aglycone (OLE), the most abundant polyphenol in extra virgin olive oil, previously shown to hinder amylin and Aß aggregation. Here we evaluated the ability of OLE to interfere with Aß proteotoxicity in vivo by using the transgenic CL2006 and CL4176 strains of Caenorhabditis elegans, simplified models of AD and of sIBM, which express human Aß in the cytoplasm of body wall muscle cells. OLE-fed CL2006 worms displayed reduced Aß plaque deposition, less abundant toxic Aß oligomers, remarkably decreased paralysis and increased lifespan with respect to untreated animals. A protective effect was also observed in CL4176 worms but only when OLE was administered before the induction of the Aß transgene expression. These effects were specific, dose-related, and not mediated by the known polyphenolic anti-oxidant activity, suggesting that, in this model organism, OLE interferes with the Aß aggregation skipping the appearance of toxic species, as already shown in vitro for Aß42.


Assuntos
Doença de Alzheimer/tratamento farmacológico , Peptídeos beta-Amiloides/biossíntese , Caenorhabditis/metabolismo , Fragmentos de Peptídeos/biossíntese , Piranos/farmacologia , Vasodilatadores/farmacologia , Doença de Alzheimer/genética , Doença de Alzheimer/metabolismo , Doença de Alzheimer/patologia , Peptídeos beta-Amiloides/antagonistas & inibidores , Peptídeos beta-Amiloides/genética , Animais , Animais Geneticamente Modificados , Caenorhabditis/genética , Modelos Animais de Doenças , Humanos , Glucosídeos Iridoides , Iridoides , Fragmentos de Peptídeos/antagonistas & inibidores , Fragmentos de Peptídeos/genética
3.
Nat Rev Genet ; 13(5): 343-57, 2012 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-22473383

RESUMO

Organisms require an appropriate balance of stability and reversibility in gene expression programmes to maintain cell identity or to enable responses to stimuli; epigenetic regulation is integral to this dynamic control. Post-translational modification of histones by methylation is an important and widespread type of chromatin modification that is known to influence biological processes in the context of development and cellular responses. To evaluate how histone methylation contributes to stable or reversible control, we provide a broad overview of how histone methylation is regulated and leads to biological outcomes. The importance of appropriately maintaining or reprogramming histone methylation is illustrated by its links to disease and ageing and possibly to transmission of traits across generations.


Assuntos
Histonas/metabolismo , Animais , Caenorhabditis/metabolismo , Drosophila/metabolismo , Epigênese Genética , Feminino , Histona Desmetilases/metabolismo , Histona Metiltransferases , Histona-Lisina N-Metiltransferase/metabolismo , Humanos , Masculino , Metilação , Camundongos , Neoplasias/metabolismo , Processamento de Proteína Pós-Traducional , Ratos
4.
RNA Biol ; 8(4): 637-47, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21593603

RESUMO

A programmed ribosomal frameshift (PRF) in the decoding of APC (adenomatous polyposis coli) mRNA has been identified and characterized in Caenorhabditis worms, Drosophila and mosquitoes. The frameshift product lacks the C-terminal approximately one-third of the product of standard decoding and instead has a short sequence encoded by the -1 frame which is just 13 residues in C. elegans, but is 125 in D. melanogaster. The frameshift site is A_AA.A_AA.C in Caenorhabditids, fruit flies and the mosquitoes studied while a variant A_AA.A_AA.A is found in some other nematodes. The predicted secondary RNA structure of the downstream stimulators varies considerably in the species studied. In the twelve sequenced Drosophila genomes, it is a long stem with a four-way junction in its loop. In the five sequenced Caenorhabditis species, it is a short RNA pseudoknot with an additional stem in loop 1. The efficiency of frameshifting varies significantly, depending on the particular stimulator within the frameshift cassette, when tested with reporter constructs in rabbit reticulocyte lysates. Phylogenetic analysis of the distribution of APC programmed ribosomal frameshifting cassettes suggests it has an ancient origin and raises questions about a possibility of synthesis of alternative protein products during expression of APC in other organisms such as humans. The origin of APC as a PRF candidate emerged from a prior study of evolutionary signatures derived from comparative analysis of the 12 fly genomes. Three other proposed PRF candidates (Xbp1, CG32736, CG14047) with switches in conservation of reading frames are likely explained by mechanisms other than PRF.


Assuntos
Proteína da Polipose Adenomatosa do Colo/metabolismo , Mudança da Fase de Leitura do Gene Ribossômico , Genes APC , RNA Mensageiro/genética , Células-Tronco/citologia , Proteína da Polipose Adenomatosa do Colo/genética , Animais , Caenorhabditis/genética , Caenorhabditis/metabolismo , Proliferação de Células , Drosophila/genética , Drosophila/metabolismo , Mutação da Fase de Leitura , Mucosa Intestinal/citologia , Fases de Leitura Aberta , Filogenia , RNA Mensageiro/química , RNA Mensageiro/metabolismo , Alinhamento de Sequência , Deleção de Sequência , Via de Sinalização Wnt/genética , beta Catenina/genética , beta Catenina/metabolismo
5.
J Insect Physiol ; 57(5): 584-94, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21335009

RESUMO

Many life history stages of animals that experience environmental insults enter developmental arrested states that are characterized by reduced cellular proliferation, with or without a concurrent reduction in overall metabolism. In the case of the most profound metabolic arrest reported in invertebrates, i.e., anaerobic quiescence in Artemia franciscana embryos, acidification of the intracellular milieu is a major factor governing catabolic and anabolic downregulation. Release of ions from intracellular compartments is the source for approximately 50% of the proton equivalents needed for the 1.5 unit acidification that is observed. Recovery from the metabolic arrest requires re-sequestration of the protons with a vacuolar-type ATPase (V-ATPase). The remarkable facet of this mechanism is the ability of embryonic cells to survive the dissipation of intracellular ion gradients. Across many diapause-like states, the metabolic reduction and subsequent matching of energy demand is accomplished by shifting energy metabolism from oxidative phosphorylation to aerobic glycolysis. Molecular pathways that are activated to induce these resilient hypometabolic states include stimulation of the AMP-activated protein kinase (AMPK) and insulin signaling via suite of daf (dauer formation) genes for diapause-like states in nematodes and insects. Contributing factors for other metabolically depressed states involve hypoxia-inducible factor-1 and downregulation of the pyruvate dehydrogenase complex. Metabolic similarities between natural states of stasis and some cancer phenotypes are noteworthy. Reduction of flux through oxidative phosphorylation helps prevent cell death in certain cancer types, similar to the way it increases viability of dauer stages in Caenorhabditis elegans. Mechanisms that underlie natural stasis are being used to pre-condition mammalian cells prior to cell biostabilization and storage.


Assuntos
Artemia/embriologia , Artemia/metabolismo , Embrião não Mamífero/metabolismo , Animais , Caenorhabditis/metabolismo , Linhagem Celular , Células Cultivadas , Criopreservação , Regulação para Baixo , Metabolismo Energético , Peixes Listrados/metabolismo , Mamíferos/metabolismo
6.
Planta Med ; 75(3): 216-21, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19085685

RESUMO

Epigallocatechin gallate (EGCG) is a major green tea polyphenol with pronounced antioxidative activity. The effects of EGCG on lifespan and stress resistance in wild-type N2 and transgenic strains of Caenorhabditis elegans [ HSP-16.2/GFP, MEV-1(KN1), FEM-1(HC17)] were investigated. The expression of HSP-16.2 (induced by the pro-oxidant juglone) and the intracellular levels of H (2)O (2) were inhibited by EGCG treatment. Daily administration of 220 muM EGCG increased the mean lifespan by 10.14 % and 14.27 % in N2 and FEM-1(HC17) strains, respectively, and 55 muM EGCG increased the mean lifespan in MEV-1(KN1) by 16.11 %. The survival rate was also increased under lethal oxidative stress by 65.05 %. These findings suggest that the increased mean lifespan and stress resistance in C. ELEGANS apparently depend, among other factors, on the antioxidant properties of EGCG.


Assuntos
Antioxidantes/farmacologia , Caenorhabditis/efeitos dos fármacos , Camellia sinensis , Catequina/análogos & derivados , Sequestradores de Radicais Livres/farmacologia , Extratos Vegetais/farmacologia , Animais , Caenorhabditis/crescimento & desenvolvimento , Caenorhabditis/metabolismo , Proteínas de Caenorhabditis elegans/antagonistas & inibidores , Proteínas de Caenorhabditis elegans/metabolismo , Catequina/farmacologia , Genes Reporter/fisiologia , Proteínas de Choque Térmico/antagonistas & inibidores , Proteínas de Choque Térmico/metabolismo , Peróxido de Hidrogênio/antagonistas & inibidores , Peróxido de Hidrogênio/metabolismo , Longevidade , Estresse Oxidativo/efeitos dos fármacos , Superóxidos/antagonistas & inibidores , Chá
7.
J Biosci Bioeng ; 105(3): 192-7, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18397767

RESUMO

The inherent operational problems of biofilters such as a pressure drop increase and nutrient limitations were managed in a toluene-removing gas biofilter with a sustainable grazing fauna consisting of micrometazoa and ciliate protozoa. Dynamic populations of predatory nematodes (Caenorhabditis sp.), rotifers (Philodina sp.), tardigrades (Echiniscus sp.) and fly larvae represented the micrometazoa community in the filter bed. Colpoda inflata, Euplotes harpa and Acineria sp. constituted the grazing ciliate community. The spatiotemporal distribution and abundance of the grazing fauna depends on physicochemical conditions and interspecies interactions in the biofilter. Of the micro metazoa, Caenorhabditis and Philodina tolerated wide concentration ranges for toluene (0.75-2.63 g m(-3)) and CO(2) (0.92-6.08 g m(-3)) and maintained stable populations of 3.4-4.7 x 10(3) and 5.8-7.65 x 10(4) g medium(-1), respectively. The grazing fauna supported a stable toluene-degrading bacterial community composed of four Pseudomonas spp. Under a maximum toluene load of 120.72 g m(-3) h(-1), at steady-state conditions 80% toluene removal was achieved in the biofilter. Of the grazing organisms, owing to their reproductive cycle and feeding behaviour, fly larvae were not suited for application in the biofilter. Meanwhile, organisms such as nematodes, rotifers and ciliates capable of tolerating a wide pollutant concentration range and maintaining a sustainable population are ideal candidates for application in biofilter technology.


Assuntos
Biodegradação Ambiental , Reatores Biológicos , Tolueno/metabolismo , Animais , Caenorhabditis/metabolismo , Eucariotos/metabolismo , Larva/metabolismo , Pseudomonas/metabolismo , Rotíferos/metabolismo
8.
Electrophoresis ; 28(23): 4484-92, 2007 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-18041037

RESUMO

Protein N-glycosylation is a post-translational modification which plays numerous crucial physiological roles. The N-glycan pattern varies depending on the species organs, tissues and even cell types and their respective physiological states. Obtaining enough starting material from a particular cell type or tissue for N-glycan purification by conventional methods can, in certain cases, be very difficult. Previously, a sensitive technique, the "in-gel release method" that allows the determination of N-glycans attached to a protein isolated by SDS-PAGE, has been developed in this and other laboratories. Here, we describe the adaptation of this method to obtain information on the N-glycome from minute amounts of tissue. The starting material, ranging from less than a milligram to a few milligrams of fresh tissue, is directly ground in Laemmli sample buffer and subject briefly to discontinuous Tris-glycine-SDS-PAGE. The Coomassie-stained band containing the majority of the proteins is subject to the "in-gel release method". The developed technique was used to analyze N-glycan patterns of different samples from Caenorhabditis elegans, Drosophila melanogaster, Spodoptera frugiperda, Trichoplusia ni, Nicotiana benthamiana, Arabidopsis thaliana, and Mus musculus. Furthermore, the technique was used to determine the effects of transient small-scale RNAi-mediated knock-down of a glycosylation-related gene in Drosophila Schneider 2 cell line.


Assuntos
Extratos Celulares/análise , Eletroforese em Gel de Poliacrilamida/métodos , Glicômica/métodos , Microquímica/métodos , Oligossacarídeos/análise , Extratos de Tecidos/análise , Animais , Arabidopsis/metabolismo , Caenorhabditis/metabolismo , Sequência de Carboidratos , Técnicas de Cultura de Células , Drosophila/metabolismo , Glicosilação , Camundongos , Oligossacarídeos/química , Sensibilidade e Especificidade , Especificidade da Espécie , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Spodoptera/metabolismo , Nicotiana/metabolismo
9.
Matrix Biol ; 26(5): 382-95, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-17321733

RESUMO

The collagen prolyl 4-hydroxylases (P4Hs) are essential for proper extracellular matrix formation in multicellular organisms. The vertebrate enzymes are alpha(2)beta(2) tetramers, in which the beta subunits are identical to protein disulfide isomerase (PDI). Unique P4H forms have been shown to assemble from the Caenorhabditis elegans catalytic alpha subunit isoforms PHY-1 and PHY-2 and the beta subunit PDI-2. A mixed PHY-1/PHY-2/(PDI-2)(2) tetramer is the major form, while PHY-1/PDI-2 and PHY-2/PDI-2 dimers are also assembled but less efficiently. Cloning and characterization of the orthologous subunits from the closely related nematode Caenorhabditis briggsae revealed distinct differences in the assembly of active P4H forms in spite of the extremely high amino acid sequence identity (92-97%) between the C. briggsae and C. elegans subunits. In addition to a PHY-1/PHY-2(PDI-2)(2) tetramer and a PHY-1/PDI-2 dimer, an active (PHY-2)(2)(PDI-2)(2) tetramer was formed in C. briggsae instead of a PHY-2/PDI-2 dimer. Site-directed mutagenesis studies and generation of inter-species hybrid polypeptides showed that the N-terminal halves of the Caenorhabditis PHY-2 polypeptides determine their assembly properties. Genetic disruption of C. briggsae phy-1 (Cb-dpy-18) via a Mos1 insertion resulted in a small (short) phenotype that is less severe than the dumpy (short and fat) phenotype of the corresponding C. elegans mutants (Ce-dpy-18). C. briggsae phy-2 RNA interference produced no visible phenotype in the wild type nematodes but produced a severe dumpy phenotype and larval arrest in phy-1 mutants. Genetic complementation of the C. briggsae and C. elegans phy-1 mutants was achieved by injection of a wild type phy-1 gene from either species.


Assuntos
Caenorhabditis/metabolismo , Colágeno/metabolismo , Pró-Colágeno-Prolina Dioxigenase/química , Pró-Colágeno-Prolina Dioxigenase/metabolismo , Subunidades Proteicas/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Animais , Caenorhabditis/genética , Catálise , Teste de Complementação Genética , Dados de Sequência Molecular , Peptídeos/química , Mutação Puntual , Pró-Colágeno-Prolina Dioxigenase/genética , Isoformas de Proteínas , Interferência de RNA , Homologia de Sequência de Aminoácidos , Especificidade da Espécie
10.
Front Biosci ; 11: 581-94, 2006 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-16146754

RESUMO

Serpins are a highly conserved superfamily of serine and papain-like cysteine proteinase inhibitors that are divided phylogenetically into clades. Serpins also can be divided anatomically into those that reside predominately outside or inside cells. While the activities of the extracellular serpins are well understood, the biological functions, as well as the overall distribution of the intracellular (serpinIC) serpins is less well defined. Conceivably, the biological function of the serpinsIC might be revealed by analysis of species with genomes of lower complexity. To this end, we sought to define the clade L serpin repertoire of Caenorhabditis elegans and other nematode species. Analysis of the C. elegans genome revealed the presence of 9 serpin genes. Five genes encoded for full-length serpins with functional reactive site loops (RSL). By definition, these genes were designated proteinase inhibitory-type, RSL-encoding serpins. Four of the C. elegans genes encoded for proteins without an RSL or transcripts with premature termination codons. The high percentage of non-RSL encoding to RSL-encoding serpin genes suggested that the former served a unique biological function rather than residing in the genome as simple pseudogenes. If this hypothesis was correct, we expected these non-RSL encoding genes to be conserved precisely in other Caenorhabditis species. However, in contrast to the RSL-encoding serpins that were well conserved and segregated into 3 sub-clades, we failed to detect non-RSL encoding serpin orthologues in the genomes of Caenorhabditis briggsae and Caenorhabditis remanei. These data suggested that unlike their RSL-encoding paralogues, the relatively high percentage of non-RSL encoding serpins in C. elegans was a vestige of recent duplication events and these latter genes were unlikely to serve essential functions in Caenorhabditis species.


Assuntos
Caenorhabditis/metabolismo , Caenorhabditis/fisiologia , Inibidores de Proteases/farmacologia , Serpinas/fisiologia , Algoritmos , Sequência de Aminoácidos , Animais , Sequência de Bases , Sítios de Ligação , Caenorhabditis elegans , Códon , Sequência Conservada , Bases de Dados Genéticas , Regulação da Expressão Gênica , Modelos Biológicos , Modelos Genéticos , Dados de Sequência Molecular , Filogenia , Conformação Proteica , Estrutura Terciária de Proteína , RNA Mensageiro/metabolismo , Homologia de Sequência de Aminoácidos , Homologia de Sequência do Ácido Nucleico , Serpinas/química , Serpinas/metabolismo , Especificidade da Espécie , Fatores de Tempo
11.
Biol Chem ; 385(8): 711-21, 2004 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-15449707

RESUMO

Polyamines are essential cell constituents involved in growth processes. In Caenorhabditis elegans the polyamine synthetic pathway consists of three enzymes, ornithine decarboxylase (ODC), S-adenosylmethionine decarboxylase (AdoMetDC) and spermidine synthase. Their gene expression pattern was determined in C. elegans by microinjection of green fluorescent protein (GFP) reporter gene constructs. All transgenic animals exhibited GFP expression in their intestinal cells. For the AdoMetDC promoter, fluorescence was additionally observed in dopaminergic neurons, while the ODC promoter also drives a male-specific GFP expression in the distal part of the reproductive system. The minimal promoter regions for intestine-specific expression of the AdoMetDC and spermidine synthase genes were determined by deletion mutants. Using the Seqcomp and Family Relation programs, a similar arrangement of putative cis-regulatory elements within these regions and also within the respective regions of the orthologous Caenorhabditis briggsae genes were found. The functional conservation of the latter was confirmed by heterologous transformation experiments. Moreover, the involvement of putative GATA- and initiator-(Inr)-like-elements in gene expression was determined by mutagenesis studies. RNase protection assay revealed that the Inr-like-element does not represent the main transcriptional start site, at least of C. elegans spermidine synthase. In conclusion, a similar minimal promoter architecture was found for C. elegans as well as C. briggsae AdoMetDC and spermidine synthase, two genes that participate in the same metabolic pathway.


Assuntos
Poliaminas Biogênicas/biossíntese , Caenorhabditis elegans/metabolismo , Fatores de Iniciação de Peptídeos/genética , Fatores de Transcrição/genética , Adenosilmetionina Descarboxilase/metabolismo , Animais , Caenorhabditis/metabolismo , Proteínas de Fluorescência Verde/metabolismo , Dados de Sequência Molecular , Ornitina Descarboxilase/metabolismo , Regiões Promotoras Genéticas/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Especificidade da Espécie , Espermidina Sintase/metabolismo
12.
Genes Dev ; 17(8): 977-90, 2003 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-12672694

RESUMO

In Caenorhabditis elegans, an X chromosome-counting mechanism specifies sexual fate. Specific genes termed X-signal elements, which are present on the X chromosome, act in a concerted dose-dependent fashion to regulate levels of the developmental switch gene xol-1. In turn, xol-1 levels determine sexual fate and the activation state of the dosage compensation mechanism. The crystal structure of the XOL-1 protein at 1.55 A resolution unexpectedly reveals that xol-1 encodes a GHMP kinase family member, despite sequence identity of 10% or less. Because GHMP kinases, thus far, have only been characterized as small molecule kinases involved in metabolic pathways, for example, amino acid and cholesterol synthesis, XOL-1 is the first member that controls nonmetabolic processes. Biochemical investigations demonstrated that XOL-1 does not bind ATP under standard conditions, suggesting that XOL-1 acts by a mechanism distinct from that of other GHMP kinases. In addition, we have cloned a XOL-1 ortholog from Caenorhabditis briggsae, a related nematode that diverged from C. elegans approximately 50-100 million years ago. These findings demonstrate an unanticipated role for GHMP kinase family members as mediators of sexual differentiation and dosage compensation and, possibly, other aspects of differentiation and development.


Assuntos
Proteínas de Caenorhabditis elegans , Caenorhabditis elegans/genética , Caenorhabditis/genética , Mecanismo Genético de Compensação de Dose , Proteínas de Helminto/química , Proteínas de Helminto/fisiologia , Processos de Determinação Sexual , Cromossomo X , Adenosina Trifosfatases/metabolismo , Trifosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Animais , Caenorhabditis/crescimento & desenvolvimento , Caenorhabditis/metabolismo , Caenorhabditis elegans/crescimento & desenvolvimento , Clonagem Molecular , Cristalização , Cristalografia por Raios X , Transtornos do Desenvolvimento Sexual/genética , Dados de Sequência Molecular , Fosfotransferases (Aceptor do Grupo Álcool)/química , Fosfotransferases (Aceptor do Grupo Fosfato)/química , Ligação Proteica , Conformação Proteica , Estrutura Terciária de Proteína , Homologia de Sequência de Aminoácidos , Transdução de Sinais , Espectrometria de Fluorescência
13.
Mol Biochem Parasitol ; 105(2): 223-36, 2000 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-10693745

RESUMO

A novel fatty acid binding protein, As-p18, is secreted into both the perivitelline and perienteric fluids of the parasitic nematode, Ascaris suum, and at least eight potential homologues of As-p18 have been identified in the Caenorhabditis elegans genome. The products of the three most closely related homologues are fatty acid binding proteins (LBP-1, LBP-2 and LBP-3) which contain putative secretory signals. Phylogenetic analysis revealed that these secreted fatty acid binding proteins comprise a distinct gene class within the fatty acid binding protein family and are possibly unique to nematodes. To examine the potential sites of As-p18 secretion, the expression of the putative promoters of the C. elegans homologues was examined with GFP reporter constructs. The developmental expression of lbp-1 was identical to that of As-p18 and consistent with the secretion of LBP-1 from the hypodermis to the perivitelline fluid. The expression patterns of lbp-2 and lbp-3 were consistent with the secretion of LBP-2 and LBP-3 from muscle into the perienteric fluid later in development. These studies demonstrate that at least some perivitelline fluid proteins appear to be secreted from the hypodermis prior to the formation of the cuticle and, perhaps more importantly, that this coordinate C. elegans/A. suum approach may be potentially useful for examining a number of key physiological processes in parasitic nematodes.


Assuntos
Ascaris suum/metabolismo , Caenorhabditis/metabolismo , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Proteínas de Helminto , Proteína P2 de Mielina/genética , Proteína P2 de Mielina/metabolismo , Proteínas de Neoplasias , Sequência de Aminoácidos , Animais , Ascaris suum/genética , Ascaris suum/crescimento & desenvolvimento , Caenorhabditis/genética , Caenorhabditis/crescimento & desenvolvimento , Proteínas de Transporte/classificação , Proteínas de Transporte/isolamento & purificação , DNA de Helmintos/análise , DNA de Helmintos/genética , Proteínas de Ligação a Ácido Graxo , Regulação da Expressão Gênica no Desenvolvimento , Genes de Helmintos , Dados de Sequência Molecular , Família Multigênica , Proteína P2 de Mielina/classificação , Proteína P2 de Mielina/isolamento & purificação , Filogenia , Alinhamento de Sequência , Análise de Sequência de DNA
14.
Neuron ; 20(4): 693-707, 1998 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-9581762

RESUMO

The synaptic protein PSD-95/SAP90 binds to and clusters a variety of membrane proteins via its two N-terminal PDZ domains. We report a novel protein, CRIPT, which is highly conserved from mammals to plants and binds selectively to the third PDZ domain (PDZ3) of PSD-95 via its C terminus. While conforming to the consensus PDZ-binding C-terminal sequence (X-S/T-X-V-COOH), residues at the -1 position and upstream of the last four amino acids of CRIPT determine its specificity for PDZ3. In heterologous cells, CRIPT causes a redistribution of PSD-95 to microtubules. In brain, CRIPT colocalizes with PSD-95 in the postsynaptic density and can be coimmunoprecipitated with PSD-95 and tubulin. These findings suggest that CRIPT may regulate PSD-95 interaction with a tubulin-based cytoskeleton in excitatory synapses.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal , Proteínas de Arabidopsis , Encéfalo/metabolismo , Proteínas de Caenorhabditis elegans , Proteínas de Transporte/química , Proteínas de Transporte/metabolismo , Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Neurônios/metabolismo , Sinaptossomos/metabolismo , Sequência de Aminoácidos , Animais , Arabidopsis/metabolismo , Sítios de Ligação , Caenorhabditis/metabolismo , Proteínas de Transporte/biossíntese , Células Cultivadas , Clonagem Molecular , Sequência Consenso , Proteína 4 Homóloga a Disks-Large , Guanilato Quinases , Hipocampo/metabolismo , Humanos , Imuno-Histoquímica , Peptídeos e Proteínas de Sinalização Intracelular , Masculino , Proteínas de Membrana/biossíntese , Dados de Sequência Molecular , Proteínas do Tecido Nervoso/química , Ratos , Ratos Sprague-Dawley , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Proteínas Associadas SAP90-PSD95 , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Sinapses/metabolismo , Proteínas Supressoras de Tumor
15.
Biochem Biophys Res Commun ; 240(2): 502-6, 1997 Nov 17.
Artigo em Inglês | MEDLINE | ID: mdl-9388509

RESUMO

The cytoplasmic domain of the syndecan family of heparan sulfate proteoglycans is punctuated by the presence of four regularly spaced tyrosine residues. In this report, we explore the possibility of whether the four tyrosine residues in the cytoplasmic domain of N-syndecan (Syndecan 3) are potential substrates for phosphorylation by a tyrosine kinase. Bacterially expressed elk kinase was used to phosphorylate a series of bacterially expressed N-syndecan fusion proteins. Our results clearly demonstrate that the tyrosine residues in the cytoplasmic domain of N-syndecan can be phosphorylated by a tyrosine-specific kinase, and that all four tyrosine residues are capable of being phosphorylated.


Assuntos
Glicoproteínas de Membrana/metabolismo , Proteoglicanas/metabolismo , Receptores Proteína Tirosina Quinases/metabolismo , Sequência de Aminoácidos , Animais , Caenorhabditis/metabolismo , Proteínas de Transporte/química , Proteínas de Transporte/metabolismo , Clonagem Molecular , Drosophila melanogaster/metabolismo , Glutationa Transferase , Proteínas Ligantes de Maltose , Glicoproteínas de Membrana/biossíntese , Glicoproteínas de Membrana/química , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Fosforilação , Reação em Cadeia da Polimerase , Proteoglicanas/biossíntese , Proteoglicanas/química , Ratos , Receptores Proteína Tirosina Quinases/biossíntese , Receptor EphB4 , Receptores da Família Eph , Receptores de Fatores de Crescimento de Fibroblastos/metabolismo , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Sindecana-3
16.
J Biol Chem ; 268(26): 19545-51, 1993 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-7690036

RESUMO

Among eukaryotes studied to date, homologs of the yeast 76-amino acid ribosomal protein have invariably been found to be cotranslated with ubiquitin. However, in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae, a 70-amino acid domain with only 40% identity to ubiquitin is cotranslated with a homolog of the ribosomal protein. In the nematode ubiquitin-like (UbL) proteins, the nucleotide sequence of the UbL coding region is 92% identical in C. elegans and C. briggsae. The corresponding gene sequence contains a single intron at a location identical to that found in the polyubiquitin gene of C. elegans, further confirming that the ubl genes are evolutionarily related to ubiquitin. The ribosomal protein portion of the UbL polypeptide consists of 93 amino acids and is 68% identical to the human homolog. The ribosomal protein portion of UbL is longer than in other homologs, with the additional sequence being present as a basic carboxyl extension. The ubl gene is constitutively expressed in all life cycle stages of C. elegans. A comparison of the nematode UbL sequences with other ubiquitin-like genes reveals a pattern of sequence conservation, which suggests that the ubiquitin-like proteins may have conserved functional domains.


Assuntos
Evolução Biológica , Caenorhabditis elegans/genética , Caenorhabditis/genética , Proteínas Ribossômicas/genética , Ubiquitinas/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Northern Blotting , Caenorhabditis/metabolismo , Caenorhabditis elegans/metabolismo , Clonagem Molecular , Embrião não Mamífero/metabolismo , Humanos , Íntrons , Dados de Sequência Molecular , Oligodesoxirribonucleotídeos , Reação em Cadeia da Polimerase , RNA/biossíntese , RNA/isolamento & purificação , Proteínas Ribossômicas/biossíntese , Homologia de Sequência de Aminoácidos , Homologia de Sequência do Ácido Nucleico , Ubiquitinas/biossíntese
17.
Biochem Biophys Res Commun ; 186(3): 1528-32, 1992 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-1324668

RESUMO

Phosphorylation of the thick filament proteins myosin and paramyosin was studied in Caenorhabditis elegans. We have incubated partially purified, native thick filaments with [gamma 32P] ATP in the presence of 50-750 mM NaCl, pH 6.5-8.0. Myosin heavy chain and paramyosin were phosphorylatable only upon solubilization at 450 mM and higher NaCl concentrations. Under conditions preserving native structures, no phosphorylation of these proteins occurred. The phosphorylation required Mg2+ but was unaffected by cAMP, cGMP or Ca2+. The specific inhibitor of cAMP and cGMP kinase catalytic subunits, H8, inhibits the activity. Sedimentation experiments show that the kinase may associate with but is not an intrinsic component of thick filaments. In C. elegans, phosphorylation by the thick filament associated activity of myosin and paramyosin is dependent upon the state of their assembly.


Assuntos
Trifosfato de Adenosina/metabolismo , Caenorhabditis/metabolismo , Miosinas/metabolismo , Proteínas Quinases/metabolismo , Tropomiosina/metabolismo , Animais , Autorradiografia , AMP Cíclico/farmacologia , Eletroforese em Gel de Poliacrilamida , Isoquinolinas/farmacologia , Miosinas/isolamento & purificação , Fosfoproteínas/isolamento & purificação , Radioisótopos de Fósforo , Fosforilação , Proteína Quinase C/antagonistas & inibidores , Tropomiosina/isolamento & purificação
18.
J Biol Chem ; 267(22): 15485-90, 1992 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-1639789

RESUMO

We have cloned a full-length cDNA for a beta-galactoside-binding protein with a relative molecular mass of 32 kDa (32-kDa GBP), recently purified from a nematode, Caenorhabditis elegans (Hirabayashi, J., Satoh, M., Ohyama, Y., and Kasai, K. (1992) J. Biochem. 111, 553-555). The clone contained a single open reading frame encoding 279 amino acids, including the initiator methionine. Significant sequence homology to metal-independent beta-galactoside-binding lectins (25-30% identities), which had previously been found only in vertebrates, was observed. Moreover, the nematode 32-kDa GBP proved to have a unique polypeptide architecture; that is, it is composed of two tandemly repeated homologous domains, each consisting of about 140 amino acids. The internal homology was about 32%. Thus, this protein is constructed with a duplicated fundamental unit which is similar to the subunit of vertebrate 14-kDa lectins. In spite of the extreme phylogenic distance between nematodes and vertebrates (divergence greater than 6 x 10(8) years ago), both of the two repeated domains of the nematode 32-kDa GBP retained most of the amino acid residues conserved in vertebrate lectins. This means that members of the metal-independent animal lectin family are distributed much more widely than had been believed: from nematodes to vertebrates. The implication is that proteins belonging to this family have fundamental roles which are not restricted to vertebrates but are common to almost all animals.


Assuntos
Caenorhabditis/genética , DNA/genética , Galactosídeos/metabolismo , Hemaglutininas/genética , Hemaglutininas/metabolismo , Sequência de Aminoácidos , Animais , Sequência de Bases , Caenorhabditis/metabolismo , Clonagem Molecular , Galectinas , Hemaglutininas/isolamento & purificação , Humanos , Dados de Sequência Molecular , Filogenia , Conformação Proteica , Mapeamento por Restrição , Homologia de Sequência do Ácido Nucleico , Vertebrados/genética
19.
EMBO J ; 11(5): 1711-6, 1992 May.
Artigo em Inglês | MEDLINE | ID: mdl-1582406

RESUMO

Titin is at present the largest known protein (M(r) 3000 kDa) and its expression is restricted to vertebrate striated muscle. Single molecules span from M- to Z-lines and therefore over 1 micron. We have isolated cDNAs encoding five distant titin A-band epitopes, extended their sequences and determined 30 kb (1000 kDa) of the primary structure of titin. Sequences near the M-line encode a kinase domain and are closely related to the C-terminus of twitchin from Caenorhabditis elegans. This suggests that the function of this region in the titin/twitchin family is conserved throughout the animal kingdom. All other A-band sequences consist of 100 amino acid (aa) repeats predicting immunoglobulin-C2 and fibronectin type III globular domains. These domains are arranged into highly ordered 11 domain super-repeat patterns likely to match the myosin helix repeat in the thick filament. Expressed titin fragments bind to the LMM part of myosin and C-protein. Binding strength increases with the number of domains involved, indicating a cumulative effect of multiple binding sites for myosin along the titin molecule. We conclude that A-band titin is likely to be involved in the ordered assembly of the vertebrate thick filament.


Assuntos
Proteínas de Caenorhabditis elegans , Proteínas de Ligação a Calmodulina , Proteínas Musculares/genética , Proteínas Quinases , Sequência de Aminoácidos , Animais , Caenorhabditis/metabolismo , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Clonagem Molecular , Conectina , DNA/genética , Fibronectinas/genética , Proteínas de Helminto/genética , Proteínas de Helminto/metabolismo , Imunoglobulinas/genética , Dados de Sequência Molecular , Proteínas Musculares/metabolismo , Miosinas/metabolismo , Fases de Leitura Aberta , Sequências Repetitivas de Ácido Nucleico , Homologia de Sequência do Ácido Nucleico , Regiões Terminadoras Genéticas
20.
FEBS Lett ; 300(1): 73-6, 1992 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-1547891

RESUMO

Pertussis toxin, islet-activating protein (IAP), and cholera toxin ADP-ribosylated 40 kDa and 45 kDa proteins in membrane preparations from Caenorhabditis elegans. Proteins with the same molecular weights were recognized in the same membranes by an antibody that had been raised against a peptide common to alpha-subunits of mammalian alpha beta gamma-heterotrimeric G proteins. The antibody produced immunoprecipitation with the 40 kDa protein 32P-labeled by IAP. A 35 kDa protein immunochemically indistinguishable from the beta-component of mammalian G proteins was also found in C. elegans membranes. The membranes displayed adenylate cyclase activity which was highly sensitive to forskolin and GTP analogues, whose action was antagonized by GDP beta S. Receptor-coupled regulation of adenylate cyclase thus appears to be mediated by mammalian-type G proteins in C. elegans as well.


Assuntos
Toxina Adenilato Ciclase , Caenorhabditis/metabolismo , Toxina da Cólera/farmacologia , Proteínas de Ligação ao GTP/metabolismo , Toxina Pertussis , Fatores de Virulência de Bordetella/metabolismo , Fatores de Virulência de Bordetella/farmacologia , Adenosina Difosfato Ribose/metabolismo , Adenilil Ciclases/metabolismo , Animais , Caenorhabditis/efeitos dos fármacos , Caenorhabditis/enzimologia , Immunoblotting , Testes de Precipitina
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