Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 103
Filtrar
Mais filtros











Base de dados
Intervalo de ano de publicação
1.
Sci Total Environ ; 925: 171763, 2024 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-38494030

RESUMO

Microbial biofilms are behind microbiologically influenced corrosion (MIC). Sessile cells in biofilms are many times more concentrated volumetrically than planktonic cells in the bulk fluids, thus providing locally high concentrations of chemicals. More importantly, "electroactive" sessile cells in biofilms are capable of utilizing extracellularly supplied electrons (e.g., from elemental Fe) for intracellular reduction of an oxidant such as sulfate in energy metabolism. MIC directly caused by anaerobic biofilms is classified into two main types based on their mechanisms: extracellular electron transfer MIC (EET-MIC) and metabolite MIC (M-MIC). Sulfate-reducing bacteria (SRB) are notorious for their corrosivity. They can cause EET-MIC in carbon steel, but they can also secrete biogenic H2S to corrode other metals such as Cu directly via M-MIC. This study investigated the use of conductive magnetic nanowires as electron mediators to accelerate and thus identify EET-MIC of C1020 by Desulfovibrio vulgaris. The presence of 40 ppm (w/w) nanowires in ATCC 1249 culture medium at 37 °C resulted in 45 % higher weight loss and 57 % deeper corrosion pits after 7-day incubation. Electrochemical tests using linear polarization resistance and potentiodynamic polarization supported the weight loss data trend. These findings suggest that conductive magnetic nanowires can be employed to identify EET-MIC. The use of insoluble 2 µm long nanowires proved that the extracellular section of the electron transfer process is a bottleneck in SRB MIC of carbon steel.


Assuntos
Desulfovibrio vulgaris , Desulfovibrio , Nanofios , Humanos , Aço , Elétrons , Carbono/metabolismo , Biofilmes , Desulfovibrio/metabolismo , Corrosão , Sulfatos/metabolismo , Redução de Peso
2.
Arch Microbiol ; 205(5): 162, 2023 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-37010699

RESUMO

Sulfur-oxidizing bacteria (SOB) and sulfate-reducing bacteria (SRB) inhabit oilfield production systems. Sulfur oxidation driven by SOB and dissimilatory sulfate reduction driven by SRB play important roles in sulfur cycle of oil reservoirs. More importantly, hydrogen sulfide produced by SRB is an acidic, flammable, and smelly toxic gas associated with reservoir souring, corrosion of oil-production facilities, and personnel safety. Effective control of SRB is urgently needed for the oil industry. This depends on an in-depth understanding of the microbial species that drive sulfur cycle and other related microorganisms in oil reservoir environments. Here, we identified SOB and SRB in produced brines of Qizhong block (Xinjiang Oilfield, China) from metagenome sequencing data based on reported SOB and SRB, reviewed metabolic pathways of sulfur oxidation and dissimilatory sulfate reduction, and ways for SRB control. The existing issues and future research of microbial sulfur cycle and SRB control are also discussed. Knowledge of the distribution of the microbial populations, their metabolic characteristics and interactions can help to develop an effective process to harness these microorganisms for oilfield production.


Assuntos
Desulfovibrio , Campos de Petróleo e Gás , Oxirredução , Sulfatos/metabolismo , Desulfovibrio/metabolismo , Bactérias/genética , Bactérias/metabolismo , Enxofre/metabolismo
3.
mBio ; 14(2): e0007623, 2023 04 25.
Artigo em Inglês | MEDLINE | ID: mdl-36786581

RESUMO

Desulfovibrio vulgaris has been a primary pure culture sulfate reducer for developing microbial corrosion concepts. Multiple mechanisms for how it accepts electrons from Fe0 have been proposed. We investigated Fe0 oxidation with a mutant of D. vulgaris in which hydrogenase genes were deleted. The hydrogenase mutant grew as well as the parental strain with lactate as the electron donor, but unlike the parental strain, it was not able to grow on H2. The parental strain reduced sulfate with Fe0 as the sole electron donor, but the hydrogenase mutant did not. H2 accumulated over time in Fe0 cultures of the hydrogenase mutant and sterile controls but not in parental strain cultures. Sulfide stimulated H2 production in uninoculated controls apparently by both reacting with Fe0 to generate H2 and facilitating electron transfer from Fe0 to H+. Parental strain supernatants did not accelerate H2 production from Fe0, ruling out a role for extracellular hydrogenases. Previously proposed electron transfer between Fe0 and D. vulgaris via soluble electron shuttles was not evident. The hydrogenase mutant did not reduce sulfate in the presence of Fe0 and either riboflavin or anthraquinone-2,6-disulfonate, and these potential electron shuttles did not stimulate parental strain sulfate reduction with Fe0 as the electron donor. The results demonstrate that D. vulgaris primarily accepts electrons from Fe0 via H2 as an intermediary electron carrier. These findings clarify the interpretation of previous D. vulgaris corrosion studies and suggest that H2-mediated electron transfer is an important mechanism for iron corrosion under sulfate-reducing conditions. IMPORTANCE Microbial corrosion of iron in the presence of sulfate-reducing microorganisms is economically significant. There is substantial debate over how microbes accelerate iron corrosion. Tools for genetic manipulation have only been developed for a few Fe(III)-reducing and methanogenic microorganisms known to corrode iron and in each case those microbes were found to accept electrons from Fe0 via direct electron transfer. However, iron corrosion is often most intense in the presence of sulfate-reducing microbes. The finding that Desulfovibrio vulgaris relies on H2 to shuttle electrons between Fe0 and cells revives the concept, developed in some of the earliest studies on microbial corrosion, that sulfate reducers consumption of H2 is a major microbial corrosion mechanism. The results further emphasize that direct Fe0-to-microbe electron transfer has yet to be rigorously demonstrated in sulfate-reducing microbes.


Assuntos
Desulfovibrio vulgaris , Desulfovibrio , Hidrogenase , Ferro , Desulfovibrio vulgaris/genética , Desulfovibrio vulgaris/metabolismo , Hidrogenase/genética , Hidrogenase/metabolismo , Corrosão , Oxirredução , Ácido Láctico , Sulfatos , Desulfovibrio/genética , Desulfovibrio/metabolismo
4.
Sci Total Environ ; 861: 160551, 2023 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-36460112

RESUMO

Schwertmannite (Sch) is an iron-hydroxysulfate mineral commonly found in acid mine drainage contaminated environment. The transformation mechanism of Sch mediated by pure cultured iron-reducing bacteria (FeRB) or sulfate-reducing bacteria (SRB) has been studied. However, FeRB and SRB widely coexist in the environment, the mechanism of Sch transformation by the consortia of FeRB and SRB is still unclear. This study investigated the Sch reduction by co-cultured Shewanella oneidensis (FeRB) and Desulfosporosinus meridiei (SRB). The results showed that co-culture of FeRB and SRB could accelerate the reductive dissolution of Sch, but not synergistically, and there were two distinct phases in the reduction of Sch mediated by FeRB and SRB: an initial phase in which FeRB predominated and Fe3+ in Sch was reduced, accompanied with the release of SO42-, and the detected secondary minerals were mainly vivianite; the second phase in which SRB predominated and mediated the reduction of SO42-, producing minerals including mackinawite and siderite in addition to vivianite. Compared to pure culture, the abundance of FeRB and SRB in the consortia decreased, and more minerals aggregated inside and outside the cell; correspondingly, the transcription levels of genes (cymA, omcA, and mtrCBA) related to Fe3+ reduction in co-culture was down-regulated, while the transcription levels of SO42--reducing genes (sat, aprAB, dsr(C)) was generally up-regulated. These phenomena suggested that secondary minerals produced in co-culture limited but did not inhibit bacterial growth, and the presence of SRB was detrimental to dissimilatory Fe3+ reduction, while existed FeRB was in favor of dissimilatory SO42- reduction. SRB mediated SO42- reduction by up-regulating the expression of SO42- reduction-related genes when its abundance was limited, which may be a strategy to cope with external coercion. These findings allow for a better understanding of the process and mechanism of microbial mediated reduction of Sch in the environment.


Assuntos
Desulfovibrio , Ferro , Ferro/metabolismo , Técnicas de Cocultura , Compostos Férricos/metabolismo , Minerais/metabolismo , Desulfovibrio/metabolismo , Bactérias/metabolismo , Sulfatos/metabolismo , Oxirredução
5.
Int J Biol Macromol ; 213: 631-638, 2022 Jul 31.
Artigo em Inglês | MEDLINE | ID: mdl-35667460

RESUMO

Hydrogen sulfide (H2S) is a bioactive gas regulating insulin secretion and sensitivity, produced by sulfate-reducing bacteria in the gut. The present study investigated the effect of chondroitin sulfate (CS) treatment, which indirectly increased the H2S production on nonalcoholic fatty liver disease (NAFLD). A 7-week CS supplementation had beneficial effects on body weight gain, liver function, hepatic histology, and serum lipid levels. CS could ameliorate diet-induced insulin resistance and improve insulin sensitivity via the AKT pathway, and modulate gut microbiota composition, especially increased the abundance of Desulfovibrio and elevated levels of hydrogen sulfide (H2S). Collectively, these findings suggested that CS treatment was positively correlated with Desulfovibrio in the gut, and the metabolic H2S flowed into the liver via the gut-liver axis, thereby triggering the AKT signaling pathway and improving insulin resistance. Thus, CS-induced alterations in the gut microbiota seem a promising for ameliorating NAFLD.


Assuntos
Desulfovibrio , Sulfeto de Hidrogênio , Resistência à Insulina , Hepatopatia Gordurosa não Alcoólica , Animais , Sulfatos de Condroitina/metabolismo , Sulfatos de Condroitina/farmacologia , Desulfovibrio/metabolismo , Dieta Hiperlipídica , Sulfeto de Hidrogênio/metabolismo , Fígado/metabolismo , Camundongos , Camundongos Endogâmicos C57BL , Hepatopatia Gordurosa não Alcoólica/metabolismo , Proteínas Proto-Oncogênicas c-akt/metabolismo
6.
Anaerobe ; 75: 102582, 2022 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-35533828

RESUMO

Desulfovibrio spp. is a commensal sulfate reducing bacterium that is present in small numbers in the gastrointestinal tract. Increased concentrations of Desulfovibrio spp. (blooms) have been reported in patients with inflammatory bowel disease and irritable bowel syndrome. Since stress has been reported to exacerbate symptoms of these chronic diseases, this study examined whether the stress catecholamine norepinephrine (NE) promotes Desulfovibrio growth. Norepinephrine-stimulated growth has been reported in other bacterial taxa, and this effect may depend on the availability of the micronutrient iron. OBJECTIVES: This study tested whether norepinephrine exposure affects the in vitro growth of Desulfovibrio vulgaris in an iron dependent manner. METHODS: DSV was incubated in a growth medium with and without 1 µm of norepinephrine. An additional growth assay added the iron chelator deferoxamine in NE exposed DSV. Iron regulatory genes were assessed with and without the treatment of NE and Deferoxamine. RESULTS: We found that norepinephrine significantly increased growth of D. vulgaris. Norepinephrine also increased bacterial production of hydrogen sulfide. Additionally, norepinephrine significantly increased bacterial expression in three of the four tested iron regulatory genes. The iron chelator deferoxamine inhibited growth of D. vulgaris in a dose-dependent manner and reversed the effect of norepinephrine on proliferation of D. vulgaris and on bacterial expression of iron regulatory genes. CONCLUSION: The data presented in this work suggests that promotion of D. vulgaris growth by norepinephrine is iron dependent.


Assuntos
Desulfovibrio vulgaris , Desulfovibrio , Desferroxamina/metabolismo , Desferroxamina/farmacologia , Desulfovibrio/metabolismo , Desulfovibrio vulgaris/genética , Humanos , Ferro/metabolismo , Quelantes de Ferro/metabolismo , Quelantes de Ferro/farmacologia , Norepinefrina/metabolismo , Norepinefrina/farmacologia
7.
J Hazard Mater ; 433: 128835, 2022 07 05.
Artigo em Inglês | MEDLINE | ID: mdl-35398798

RESUMO

Mercury (Hg) is a pervasive environmental pollutant and poses serious health concerns as inorganic Hg(II) can be converted to the neurotoxin methylmercury (MeHg), which bioaccumulates and biomagnifies in food webs. Phytoplankton, representing the base of aquatic food webs, can take up Hg(II) and influence MeHg production, but currently little is known about how and to what extent phytoplankton may impact Hg(II) methylation by itself or by methylating bacteria it harbors. This study investigated whether some species of phytoplankton could produce MeHg and how the live or dead phytoplankton cells and excreted algal organic matter (AOM) impact Hg(II) methylation by several known methylators, including iron-reducing bacteria (FeRB), Geobacter anodireducens SD-1 and Geobacter sulfurreducens PCA, and the sulfate-reducing bacterium (SRB) Desulfovibrio desulfuricans ND132 (or Pseudodesulfovibrio mercurii). Our results indicate that, among the 4 phytoplankton species studied, none were capable of methylating Hg(II). However, the presence of phytoplankton cells (either live or dead) from Chlorella vulgaris (CV) generally inhibited Hg(II) methylation by FeRB but substantially enhanced methylation by SRB D. desulfuricans ND132. Enhanced methylation was attributed in part to CV-excreted AOM, which increased Hg(II) complexation and methylation by ND132 cells. In contrast, inhibition of methylation by FeRB was attributed to these bacteria incapable of competing with phytoplankton for Hg(II) binding and uptake. These observations suggest that phytoplankton could play different roles in affecting Hg(II) methylation by the two groups of anaerobic bacteria, FeRB and SRB, and thus shed additional light on how phytoplankton blooms may modulate MeHg production and bioaccumulation in the aquatic environment.


Assuntos
Chlorella vulgaris , Desulfovibrio desulfuricans , Desulfovibrio , Mercúrio , Compostos de Metilmercúrio , Bactérias/metabolismo , Chlorella vulgaris/metabolismo , Desulfovibrio/metabolismo , Desulfovibrio desulfuricans/metabolismo , Exsudatos e Transudatos/metabolismo , Ferro/metabolismo , Mercúrio/metabolismo , Mercúrio/toxicidade , Metilação , Compostos de Metilmercúrio/metabolismo , Compostos de Metilmercúrio/toxicidade , Fitoplâncton , Sulfatos/metabolismo
8.
Chemosphere ; 298: 134256, 2022 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-35271902

RESUMO

Aquaculture wastewater contained a high remnant of oxytetracycline (OTC) and nitrate. In this study, OTC co-metabolized with denitrification/desulfurization was investigated in terms of kinetic analysis, pathway, microbial communities and produces analysis in sulfate-reducing bacteria (SRB) mediated system. Long-term acclimatization with sulfate (300 mg-S/L) could markedly accelerate the removed rate of OTC from 0.9 to 1.4 mg/g-SS/d, with the kinetic constants increasing from 0.2760 to 0.5232 d-1, mainly via enzymes including adenosine-5'-phos-phosulfate reductase and cytochrome P450, and non-enzymatic process related to intermediates (adenosine-5'-phos-phosulfate and S0). Furthermore, OTC was likely detoxified by SRB enriched sludge mainly via hydrolysis, dehydration, oxidation and reduction. The denitrification process would postpone the OTC degradation via outcompeting electron donors with the desulfurization process. Redundancy analysis suggested that sulfur-oxidizing bacteria (Acidithiobacillus, Ochrobactrum) were highly related to OTC degradation processes. This study provides deep insight and a new opportunity for the treatment of aquaculture wastewater containing OTC, sulfate and nitrate by SRB sludge.


Assuntos
Desulfovibrio , Oxitetraciclina , Adenosina , Reatores Biológicos/microbiologia , Desnitrificação , Desulfovibrio/metabolismo , Cinética , Nitratos/metabolismo , Esgotos/microbiologia , Sulfatos/metabolismo , Águas Residuárias/microbiologia
9.
Bioelectrochemistry ; 145: 108058, 2022 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-35074731

RESUMO

Sulfate-reducing bacteria (SRB) are the most studied microorganisms related to severe episodes of microbially influenced corrosion (MIC). A mechanism used by SRB to corrode steel alloys is the extracellular electron transfer (EET), which was described by the biocatalytic cathodic sulfate reduction (BCSR) theory. This theory was supported by several experimental research and some mathematical approaches. However, mathematical modelling that represents the effect of the EET on pit development and the subsequent changes in surface topography has not been reported. In this study, a mechanistic mathematical model of microbial corrosion induced by SRB through EET was developed and implemented. The developed model used data from previously reported experiments to describe the phenomenon and define stoichiometric and kinetic parameters. Results of biofilm development and growth-associated corrosion (i.e. weight loss and maximum pit depths) obtained by simulations were similar to experimental evidence reported in the literature. These simulations reveal that the main parameters that control MIC are the maintenance coefficient of SRB, the initial planktonic cell concentration, and the probability of surface colonization.


Assuntos
Desulfovibrio , Aço , Biofilmes , Carbono , Corrosão , Desulfovibrio/metabolismo , Elétrons , Modelos Teóricos , Sulfatos/metabolismo
10.
Bioelectrochemistry ; 142: 107933, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34560601

RESUMO

Crevice corrosion of X80 carbon steel in simulated seawater with the presence of SRB was studied by surface analysis and electrochemical measurements. The electrode inside crevice was seriously corroded. Large amount of corrosion products accumulated along the crevice mouth. Galvanic current densities measurements confirmed that there was a galvanic effect between the carbon steel at the crevice interior and exterior during the crevice corrosion. The difference in the sessile SRB cells quantities and SRB biofilms developments inside and outside crevice caused the galvanic effect between the carbon steel inside and outside the crevice, which further induced crevice corrosion. Increased crevice width reduced the galvanic effect, resulting in less crevice corrosion in wider crevice.


Assuntos
Biofilmes/crescimento & desenvolvimento , Desulfovibrio/metabolismo , Água do Mar/microbiologia , Aço/química , Microbiologia da Água , Corrosão
11.
Bioelectrochemistry ; 142: 107922, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34392136

RESUMO

Localized corrosion of submerged steel H-piles was detected in a Florida bridge spanning over a brackish river. Analysis of the water showed proliferation of sulfate reducing bacteria (SRB). The steel piles had coincident heavy marine growth that may support biofilms and biocorrosion. The objective of the research described here was to identify the role of the physical morphologies of macrofouling on SRB activity and the aggravation of microbiologically influences corrosion (MIC) of submerged steel bridge. Laboratory experiments were carried out in nutrient-rich environments inoculated with SRB, with both porous and laminate crevice conditions characteristic of soft and hard marine fouling. It was confirmed that SRB proliferation can occur within the crevice environments, but aeration levels under crevices with interaction with the bulk solution can affect SRB activity. Electrochemical impedance spectroscopy provided separation of environmental parameters and surface reaction parameters for the complicated systems relating to corrosion under the porous and laminate crevice geometries.


Assuntos
Biofilmes/crescimento & desenvolvimento , Desulfovibrio/metabolismo , Águas Salinas/química , Aço/química , Corrosão
12.
Bioelectrochemistry ; 142: 107920, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34388603

RESUMO

EET (extracellular electron transfer) is behind MIC (microbiologically influenced corrosion) of carbon steel by SRB (sulfate reducing bacteria). This work evaluated 20 ppm (w/w) riboflavin (an electron mediator) acceleration of C1018 carbon steel MIC by Desulfovibrio ferrophilus IS5 in enriched artificial seawater (EASW) after 7-d incubation in anaerobic vials at 28 °C. Twenty ppm riboflavin did not significantly change cell growth or alter the corrosion product varieties, but it led to 52% increase in weight loss and 105% increase in pit depth, compared to the control without 20 ppm riboflavin. With 20 ppm riboflavin supplement in EASW, D. ferrophilus yielded weight loss-based corrosion rate of 1.57 mm/y (61.8 mpy), and pit depth growth rate of 2.88 mm/y (113 mpy), highest reported for short-term pure-strain SRB MIC of carbon steel. Electrochemical tests in 450 mL glass cells indicated that the biofilm responded rather quickly to the riboflavin injection (20 ppm in broth) to the culture medium. Polarization resistance (Rp) began to decrease within minutes after injection. Within 2 h, the riboflavin injection led to 31% decrease in Rp and 35% decrease in Rct + Rf from electrochemical impedance spectroscopy (EIS). The Tafel corrosion current density increased 63% 2 h after the injection.


Assuntos
Biofilmes/crescimento & desenvolvimento , Desulfovibrio/metabolismo , Riboflavina , Corrosão , Transporte de Elétrons , Riboflavina/química , Riboflavina/metabolismo , Aço/química
13.
FEMS Microbiol Ecol ; 95(8)2019 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-31281924

RESUMO

Community compositional changes and the corrosion of carbon steel in the presence of different electron donor and acceptor combinations were examined with a methanogenic consortium enriched for its ability to mineralize paraffins. Despite cultivation in the absence of sulfate, metagenomic analysis revealed the persistence of several sulfate-reducing bacterial taxa. Upon sulfate amendment, the consortium was able to couple C28H58 biodegradation with sulfate reduction. Comparative analysis suggested that Desulforhabdus and/or Desulfovibrio likely supplanted methanogens as syntrophic partners needed for C28H58 mineralization. Further enrichment in the absence of a paraffin revealed that the consortium could also utilize carbon steel as a source of electrons. The severity of both general and localized corrosion increased in the presence of sulfate, regardless of the electron donor utilized. With carbon steel as an electron donor, Desulfobulbus dominated in the consortium and electrons from iron accounted for ∼92% of that required for sulfate reduction. An isolated Desulfovibrio spp. was able to extract electrons from iron and accelerate corrosion. Thus, hydrogenotrophic partner microorganisms required for syntrophic paraffin metabolism can be readily substituted depending on the availability of an external electron acceptor and a single paraffin-degrading consortium harbored microbes capable of both chemical and electrical microbially influenced iron corrosion.


Assuntos
Deltaproteobacteria/metabolismo , Desulfovibrio/metabolismo , Ferro/metabolismo , Parafina/metabolismo , Aço/química , Anaerobiose/fisiologia , Corrosão , Consórcios Microbianos/fisiologia , Oxirredução , Sulfatos/metabolismo
14.
Sci Rep ; 9(1): 712, 2019 01 24.
Artigo em Inglês | MEDLINE | ID: mdl-30679587

RESUMO

Despite recent advances in understanding the biogenesis of iron-sulfur (Fe-S) proteins, most studies focused on aerobic bacteria as model organisms. Accordingly, multiple players have been proposed to participate in the Fe-S delivery step to apo-target proteins, but critical gaps exist in the knowledge of Fe-S proteins biogenesis in anaerobic organisms. Mrp/NBP35 ATP-binding proteins are a subclass of the soluble P-loop containing nucleoside triphosphate hydrolase superfamily (P-loop NTPase) known to bind and transfer Fe-S clusters in vitro. Here, we report investigations of a novel atypical two-domain Mrp/NBP35 ATP-binding protein named MrpORP associating a P-loop NTPase domain with a dinitrogenase iron-molybdenum cofactor biosynthesis domain (Di-Nase). Characterization of full length MrpORP, as well as of its two domains, showed that both domains bind Fe-S clusters. We provide in vitro evidence that the P-loop NTPase domain of the MrpORP can efficiently transfer its Fe-S cluster to apo-target proteins of the ORange Protein (ORP) complex, suggesting that this novel protein is involved in the maturation of these Fe-S proteins. Last, we showed for the first time, by fluorescence microscopy imaging a polar localization of a Mrp/NBP35 protein.


Assuntos
Proteínas de Bactérias/metabolismo , Desulfovibrio/metabolismo , Proteínas de Ligação ao GTP/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Ferro/metabolismo , Enxofre/metabolismo , Proteínas AAA/genética , Proteínas AAA/metabolismo , Proteínas de Bactérias/genética , Citosol , Desulfovibrio/classificação , Desulfovibrio/genética , Proteínas de Ligação ao GTP/genética , Proteínas Ferro-Enxofre/genética , Molibdoferredoxina/metabolismo , Nitrogenase/genética , Nitrogenase/metabolismo , Ligação Proteica , Domínios Proteicos
15.
Methods Enzymol ; 606: 73-94, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30097105

RESUMO

Anaerobic choline deamination catalyzed by the glycyl radical enzyme choline trimethylamine-lyase (CutC) has emerged as a major route for trimethylamine (TMA) production within anaerobic environments, including the human gut. The association of this microbial metabolite and its downstream products with diseases such as atherosclerosis and chronic kidney disease has driven the need for a better molecular understanding of TMA-generating enzymes. Our previous work has shown that generating the critical, glycine-centered radical species on CutC requires posttranslational modification by an S-adenosyl-l-methionine (SAM)-dependent radical-activating protein (CutD) harboring an oxygen-sensitive [4Fe-4S] cofactor. In this chapter, we describe our strategy to heterologously express and purify Desulfovibrio alaskensis G20 CutD in Escherichia coli and reconstitute its iron-sulfur center under anaerobic conditions. In addition, we present the methods we have developed to characterize the activity of CutD and utilize this enzyme in conjunction with purified CutC to gain an unprecedented insight into the anaerobic C-N cleavage of choline.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Proteínas de Bactérias/metabolismo , Colina/metabolismo , Ensaios Enzimáticos/métodos , Liases/metabolismo , Proteínas Adaptadoras de Transdução de Sinal/química , Proteínas Adaptadoras de Transdução de Sinal/isolamento & purificação , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Clonagem Molecular/métodos , Desulfovibrio/metabolismo , Espectroscopia de Ressonância de Spin Eletrônica/métodos , Metilaminas/metabolismo , Processamento de Proteína Pós-Traducional , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , S-Adenosilmetionina/metabolismo
16.
Microb Pathog ; 112: 126-134, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28963010

RESUMO

The human microbiome consists of a multitude of bacterial genera and species which continuously interact with one another and their host establishing a metabolic equilibrium. The dysbiosis can lead to the development of pathology, such as inflammatory bowel diseases. Sulfide-producing prokaryotes, including sulphate-reducing bacteria (SRB) constituting different genera, including the Desulfovibrio, are commonly detected within the human microbiome recovered from fecal material or colonic biopsy samples. It has been proposed that SRB likely contribute to colonic pathology, for example ulcerative colitis (UC). The interaction of SRB with the human colon and intestinal epithelial cell lines has been investigated using Desulfovibrio indonesiensis as a model mono-culture and in a co-culture with E. coli isolate, and with SRB consortia from human biopsy samples. We find that D. indonesiensis, whether as a mono- or co-culture, was internalized and induced apoptosis in colon epithelial cells. This effect was enhanced in the presence of E. coli. The SRB combination obtained through enrichment of biopsies from UC patients induced apoptosis of a human intestinal epithelial cell line. This response was not observed in SRB enrichments from healthy (non-UC) controls. Importantly, apoptosis was detected in epithelial cells from UC patients and was not seen in epithelial cells of healthy donors. Furthermore, the antibody raised against exopolysaccharides (EPS) of D. indonesiensis cross reacted with the SRB population from UC patients but not with the SRB combination from non-UC controls. This study reinforces a correlation between the presence of sulphate-reducing bacteria and an inflammatory response in UC sufferers.


Assuntos
Apoptose/efeitos dos fármacos , Bactérias/efeitos dos fármacos , Colite Ulcerativa/microbiologia , Células Epiteliais/metabolismo , Trato Gastrointestinal/metabolismo , Sulfatos/farmacologia , Biópsia , Linhagem Celular , Técnicas de Cocultura , Colo/patologia , Colonoscopia , Desulfovibrio/metabolismo , Células Epiteliais/patologia , Escherichia coli/isolamento & purificação , Escherichia coli/metabolismo , Fezes/microbiologia , Humanos , Doenças Inflamatórias Intestinais/microbiologia , Mucosa Intestinal/microbiologia , Mucosa Intestinal/patologia , Reino Unido
17.
Int J Mol Sci ; 18(1)2017 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-28067774

RESUMO

Biohydrogen is a versatile energy carrier for the generation of electric energy from renewable sources. Hydrogenases can be used in enzymatic fuel cells to oxidize dihydrogen. The rate of electron transfer (ET) at the anodic side between the [NiFe]-hydrogenase enzyme distal iron-sulfur cluster and the electrode surface can be described by the Marcus equation. All parameters for the Marcus equation are accessible from Density Functional Theory (DFT) calculations. The distal cubane FeS-cluster has a three-cysteine and one-histidine coordination [Fe4S4](His)(Cys)3 first ligation sphere. The reorganization energy (inner- and outer-sphere) is almost unchanged upon a histidine-to-cysteine substitution. Differences in rates of electron transfer between the wild-type enzyme and an all-cysteine mutant can be rationalized by a diminished electronic coupling between the donor and acceptor molecules in the [Fe4S4](Cys)4 case. The fast and efficient electron transfer from the distal iron-sulfur cluster is realized by a fine-tuned protein environment, which facilitates the flow of electrons. This study enables the design and control of electron transfer rates and pathways by protein engineering.


Assuntos
Proteínas de Bactérias/química , Hidrogênio/química , Hidrogenase/química , Proteínas Ferro-Enxofre/química , Algoritmos , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Cisteína/química , Cisteína/genética , Cisteína/metabolismo , Desulfovibrio/genética , Desulfovibrio/metabolismo , Transporte de Elétrons/genética , Elétrons , Histidina/química , Histidina/genética , Histidina/metabolismo , Hidrogênio/metabolismo , Hidrogenase/metabolismo , Proteínas Ferro-Enxofre/genética , Proteínas Ferro-Enxofre/metabolismo , Modelos Químicos , Modelos Moleculares , Mutação , Oxirredução , Conformação Proteica , Termodinâmica
18.
Anaerobe ; 43: 27-34, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27871998

RESUMO

Sulfidogenic Clostridia and sulfate reducing bacteria (SRB) often cohabit in nature. The presence of these microorganisms can cause microbially influenced corrosion (MIC) of materials in different ways. To investigate this aspect, bacteria were isolated from cooling tower water and used in corrosion tests of galvanized steel. The identity of the isolates was determined by comparative sequence analysis of PCR-amplified 16S rDNA gene fragments, separated by denaturing gradient gel electrophoresis (DGGE). This analysis showed that, in spite of the isolation process, colonies were not pure and consisted of a mixture of bacteria affiliated with Desulfosporosinus meridiei and Clostridium sp. To evaluate the corrosive effect, galvanized steel coupons were incubated with a mixed culture for 4, 8, 24, 72, 96, 168, 360 and 744 h, along with a control set in sterile culture medium only. The corrosion rate was determined by weight loss, and biofilm formation and corroded surfaces were observed by scanning electron microscopy (SEM). Although the sulfide-producing bacterial consortium led to a slight increase in the corrosion of galvanized steel coupons, when compared to the previous studies it can be said that Clostridium sp. can reduce the corrosive effect of the Desulfosporosinus sp. strain.


Assuntos
Bactérias/classificação , Biofilmes/efeitos dos fármacos , Aço/química , Sulfetos/metabolismo , Microbiologia da Água , Ar Condicionado , Bactérias/genética , Bactérias/crescimento & desenvolvimento , Bactérias/metabolismo , Carboidratos/análise , Clostridium/genética , Clostridium/metabolismo , Corrosão , DNA Bacteriano/química , DNA Ribossômico/química , Eletroforese em Gel de Gradiente Desnaturante , Desulfovibrio/genética , Desulfovibrio/metabolismo , Microscopia Eletrônica de Varredura , Peptococcaceae/genética , Peptococcaceae/metabolismo , Reação em Cadeia da Polimerase , RNA Ribossômico 16S/genética , Alinhamento de Sequência , Zinco/análise
19.
ISME J ; 9(11): 2400-12, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-25871933

RESUMO

A central tenant in microbial biogeochemistry is that microbial metabolisms follow a predictable sequence of terminal electron acceptors based on the energetic yield for the reaction. It is thereby oftentimes assumed that microbial respiration of ferric iron outcompetes sulfate in all but high-sulfate systems, and thus sulfide has little influence on freshwater or terrestrial iron cycling. Observations of sulfate reduction in low-sulfate environments have been attributed to the presumed presence of highly crystalline iron oxides allowing sulfate reduction to be more energetically favored. Here we identified the iron-reducing processes under low-sulfate conditions within columns containing freshwater sediments amended with structurally diverse iron oxides and fermentation products that fuel anaerobic respiration. We show that despite low sulfate concentrations and regardless of iron oxide substrate (ferrihydrite, Al-ferrihydrite, goethite, hematite), sulfidization was a dominant pathway in iron reduction. This process was mediated by (re)cycling of sulfur upon reaction of sulfide and iron oxides to support continued sulfur-based respiration--a cryptic sulfur cycle involving generation and consumption of sulfur intermediates. Although canonical iron respiration was not observed in the sediments amended with the more crystalline iron oxides, iron respiration did become dominant in the presence of ferrihydrite once sulfate was consumed. Thus, despite more favorable energetics, ferrihydrite reduction did not precede sulfate reduction and instead an inverse redox zonation was observed. These findings indicate that sulfur (re)cycling is a dominant force in iron cycling even in low-sulfate systems and in a manner difficult to predict using the classical thermodynamic ladder.


Assuntos
Desulfovibrio/metabolismo , Compostos Férricos/metabolismo , Sedimentos Geológicos/química , Sulfatos/metabolismo , Desulfovibrio/genética , Água Doce , Gases , Sedimentos Geológicos/microbiologia , Ferro/metabolismo , Compostos de Ferro , Minerais , Oxirredução , Óxidos , Consumo de Oxigênio , RNA Ribossômico 16S/genética , Sulfetos , Enxofre/metabolismo , Compostos de Enxofre , Termodinâmica
20.
N Biotechnol ; 32(6): 727-31, 2015 Dec 25.
Artigo em Inglês | MEDLINE | ID: mdl-25686718

RESUMO

Desulfovibrio alaskensis G20 is an anaerobic sulfate reducing bacteria. While Desulfovibrio species have previously been shown to reduce palladium and platinum to the zero-state, forming nanoparticles in the process; there have been no reports that D. alaskensis is able to form these nanoparticles. Metal nanoparticles have properties that make them ideal for use in many industrial and medical applications, such as their size and shape giving them higher catalytic activity than the bulk form of the same metal. Nanoparticles of the platinum group metals in particular are highly sought after for their catalytic ability and herein we report the formation of both palladium and platinum nanoparticles by D. alaskensis and the biotransformation of solvated nickel ions to nanoparticle form.


Assuntos
Desulfovibrio/classificação , Desulfovibrio/metabolismo , Poluentes Ambientais/metabolismo , Nanopartículas Metálicas/microbiologia , Níquel/metabolismo , Platina/metabolismo , Biodegradação Ambiental , Poluentes Ambientais/isolamento & purificação , Nanopartículas Metálicas/química , Nanopartículas Metálicas/ultraestrutura , Níquel/química , Níquel/isolamento & purificação , Platina/química , Platina/isolamento & purificação , Especificidade da Espécie , Gerenciamento de Resíduos/métodos
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA