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1.
Infect Immun ; 89(1)2020 12 15.
Artigo em Inglês | MEDLINE | ID: mdl-33046511

RESUMO

Programmed cell death ligand-1 (PD-L1) is an immune checkpoint protein which is used by tumor cells for immune evasion. PD-L1 is upregulated in inflamed intestinal tissues. The intestinal tract is colonized by millions of bacteria, most of which are commensal bacterial species. We hypothesized that under inflammatory conditions, some commensal bacterial species contribute to increased PD-L1 expression in intestinal epithelium and examined this hypothesis. Human intestinal epithelial HT-29 cells with and without interferon (IFN)-γ sensitization were incubated with six strains of four enteric bacterial species. The mRNA and protein levels of PD-L1 in HT-29 cells were examined using quantitative real-time PCR and flow cytometry, respectively. The levels of interleukin (IL)-1ß, IL-18, IL-6, IL-8, and tumor necrosis factor (TNF)-α secreted by HT-29 cells were measured using enzyme-linked immunosorbent assay. Apoptosis of HT-29 cells was measured using a caspase 3/7 assay. We found that Escherichia coli K12 significantly upregulated both PD-L1 mRNA and protein in IFN-γ-sensitized HT-29 cells. E. coli K12 induced the production of IL-8 in HT-29 cells, however, IL-8 did not affect HT-29 PD-L1 expression. Inhibition of the nuclear factor-kappa B pathway significantly reduced E. coli K12-induced PD-L1 expression in HT-29 cells. The other two E. coli strains and two enteric bacterial species did not significantly affect PD-L1 expression in HT-29 cells. Enterococcus faecalis significantly inhibited PD-L1 expression due to induction of cell death. Data from this study suggest that some gut bacterial species have the potential to affect immune function under inflammatory conditions via upregulating epithelial PD-L1 expression.


Assuntos
Antígeno B7-H1/genética , Escherichia coli K12/fisiologia , Regulação da Expressão Gênica , Interferon gama/metabolismo , Mucosa Intestinal/metabolismo , Mucosa Intestinal/microbiologia , NF-kappa B/metabolismo , Transdução de Sinais , Antígeno B7-H1/metabolismo , Biomarcadores , Linhagem Celular , Citocinas/metabolismo , Infecções por Escherichia coli/genética , Infecções por Escherichia coli/imunologia , Infecções por Escherichia coli/metabolismo , Infecções por Escherichia coli/microbiologia , Interações Hospedeiro-Patógeno/genética , Interações Hospedeiro-Patógeno/imunologia , Humanos
2.
Microb Pathog ; 133: 103545, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31112772

RESUMO

Commensal enteric microbes under specific conditions viz. immunocompromised system, altered microbiota or uncompetitive niche induce their otherwise dormant pathogenic phenotype to distort host cellular functioning. Here we investigate how under in vitro environment established by using Caco-2 cells, commensal gut microbe E. coli K12 (ATCC 14849) disrupt intestinal epithelial barrier function. Caco-2 cells exposed to E. coli showed the time dependent significant (P < 0.01) decrease in transepithelial electrical resistance (TEER) and concomitantly increased phenol red flux across cell monolayer in contrast to non infected control cells. E. coli infected intestinal cells were observed with suppressed (p < 0.05) mRNA levels of ZO-1, Claudin-1, Occludin and Cingulin-1 in contrast to significantly (p < 0.05) higher PIgR and hbd-2 mRNA fold changes. Immunofluorescent and electron micrographs revealed the disrupted distribution and localisation of specific tight junction proteins (Zo-1 and Claudin-1) and actin filament in E. coli infected Caco-2 cells that ultimately resulted in deformed cellular morphology. Taken together, E. coli K12 under compromised in vitro milieu disrupted the intestinal barrier functions by decreasing the expression of important tight junction genes along with the altered distribution of associated proteins that increased the intestinal permeability as reflected by phenol red flux and TEER values.


Assuntos
Escherichia coli K12/fisiologia , Escherichia coli K12/patogenicidade , Microbioma Gastrointestinal , Infecções Oportunistas/microbiologia , Simbiose , Células CACO-2/citologia , Células CACO-2/microbiologia , Claudina-1/metabolismo , Proteínas do Citoesqueleto , Impedância Elétrica , Células Epiteliais/metabolismo , Expressão Gênica , Interações entre Hospedeiro e Microrganismos , Humanos , Mucosa Intestinal/metabolismo , Intestinos/microbiologia , Proteínas de Membrana/metabolismo , Proteínas dos Microfilamentos/metabolismo , Ocludina/genética , Ocludina/metabolismo , Permeabilidade , RNA Mensageiro , Proteínas de Junções Íntimas/metabolismo , Junções Íntimas/metabolismo , Proteína da Zônula de Oclusão-1/metabolismo , beta-Defensinas/metabolismo
3.
Mol Microbiol ; 110(2): 204-218, 2018 10.
Artigo em Inglês | MEDLINE | ID: mdl-30076772

RESUMO

3-Deoxy-d-manno-oct-2-ulosonic acid (Kdo) is an essential component of lipopolysaccharides (LPS) in the Gram-negative bacterial outer membrane. Metabolic labeling of Escherichia coli LPS with 8-azido-3,8-dideoxy-d-manno-oct-2-ulosonic acid (Kdo-N3 ) has been reported but is inefficient. For optimization, it is important to understand how exogenous Kdo-N3 enters the cytoplasm. Based on similarities between Kdo and sialic acids, we proposed and verified that the sialic acid transporter NanT imports exogenous Kdo-N3 into E. coli. We demonstrated that E. coli ΔnanT were not labeled with Kdo-N3 , while expression of NanT in the ΔnanT mutant restored Kdo-N3 incorporation. Induced NanT expression in a strain lacking Kdo biosynthesis led to higher exogenous Kdo incorporation and restoration of full-length core-LPS, suggesting that NanT also transports Kdo. While Kdo-N3 incorporation was observed in strains having NanT, it was not detected in Pseudomonas aeruginosa and Acinetobacter baumannii, which lack nanT. However, heterologous expression of E. coli NanT in P. aeruginosa enabled Kdo-N3 incorporation and labeling, though this led to abnormal morphology and growth arrest. NanT seems to define which bacteria can be labeled with Kdo-N3 , provides opportunities to enhance Kdo-N3 labeling efficiency and spectrum, and raises the possibility of Kdo biosynthetic bypass where exogenous Kdo is present, perhaps even in vivo.


Assuntos
Azidas/farmacologia , Escherichia coli K12/fisiologia , Proteínas de Escherichia coli/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Transportadores de Ânions Orgânicos/metabolismo , Açúcares Ácidos/farmacologia , Simportadores/metabolismo , Acinetobacter baumannii/efeitos dos fármacos , Acinetobacter baumannii/genética , Acinetobacter baumannii/fisiologia , Membrana Celular/metabolismo , Citoplasma/metabolismo , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/genética , Proteínas de Escherichia coli/genética , Corantes Fluorescentes/farmacologia , Lipopolissacarídeos/metabolismo , Proteínas de Membrana Transportadoras/genética , Ácidos Neuramínicos/farmacologia , Transportadores de Ânions Orgânicos/genética , Pseudomonas aeruginosa/efeitos dos fármacos , Pseudomonas aeruginosa/genética , Pseudomonas aeruginosa/fisiologia , Simportadores/genética
4.
Nat Commun ; 9(1): 1885, 2018 05 14.
Artigo em Inglês | MEDLINE | ID: mdl-29760469

RESUMO

The bacterial flagellum is a large extracellular protein organelle that extrudes from the cell surface. The flagellar filament is assembled from tens of thousands of flagellin subunits that are exported through the flagellar type III secretion system. Here, we measure the growth of Escherichia coli flagella in real time and find that, although the growth rate displays large variations at similar lengths, it decays on average as flagella lengthen. By tracking single flagella, we show that the large variations in growth rate occur as a result of frequent pauses. Furthermore, different flagella on the same cell show variable growth rates with correlation. Our observations are consistent with an injection-diffusion model, and we propose that an insufficient cytoplasmic flagellin supply is responsible for the pauses in flagellar growth in E. coli.


Assuntos
Escherichia coli K12/ultraestrutura , Flagelos/ultraestrutura , Flagelina/ultraestrutura , Imagem com Lapso de Tempo/métodos , Sistemas de Secreção Tipo III/fisiologia , Arsenicais/química , Arsenicais/metabolismo , Cisteína/química , Cisteína/metabolismo , Escherichia coli K12/fisiologia , Flagelos/fisiologia , Flagelina/metabolismo , Corantes Fluorescentes/química , Corantes Fluorescentes/metabolismo , Oligopeptídeos/química , Oligopeptídeos/metabolismo , Biossíntese de Proteínas , Subunidades Proteicas/química , Subunidades Proteicas/metabolismo
5.
Sci Rep ; 8(1): 8166, 2018 05 25.
Artigo em Inglês | MEDLINE | ID: mdl-29802368

RESUMO

Conjugated estrogens (CE) and Bazedoxifene (BZA) combination is used to alleviate menopause-associated symptoms in women. CE+BZA undergo first-pass-metabolism in the liver and deconjugation by gut microbiome via ß-glucuronidase (GUS) enzyme inside the distal gut. To date, the impact of long-term exposure to CE+BZA on the gut microbiome or GUS activity has not been examined. Our study using an ovariectomized mouse model showed that CE+BZA administration did not affect the overall cecal or fecal microbiome community except that it decreased the abundance of Akkermansia, which was identified as a fecal biomarker correlated with weight gain. The fecal GUS activity was reduced significantly and was positively correlated with the abundance of Lactobacillaceae in the fecal microbiome. We further confirmed in Escherichia coli K12 and Lactobacillus gasseri ADH that Tamoxifen-, 4-hydroxy-Tamoxifen- and Estradiol-Glucuronides competed for GUS activity. Our study for the first time demonstrated that long-term estrogen supplementation directly modulated gut microbial GUS activity. Our findings implicate that long-term estrogen supplementation impacts composition of gut microbiota and microbial activity, which affects estrogen metabolism in the gut. Thus, it is possible to manipulate such activity to improve the efficacy and safety of long-term administered estrogens for postmenopausal women or breast cancer patients.


Assuntos
Estrogênios Conjugados (USP)/farmacologia , Fezes/enzimologia , Microbioma Gastrointestinal/efeitos dos fármacos , Glucuronidase/metabolismo , Indóis/farmacologia , Animais , Biomarcadores/metabolismo , Interações Medicamentosas , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/fisiologia , Fezes/microbiologia , Feminino , Lactobacillus gasseri/efeitos dos fármacos , Lactobacillus gasseri/fisiologia , Camundongos , Camundongos Endogâmicos C57BL , Fatores de Tempo
6.
EMBO J ; 37(8)2018 04 13.
Artigo em Inglês | MEDLINE | ID: mdl-29514851

RESUMO

The nucleotide second messenger c-di-GMP nearly ubiquitously promotes bacterial biofilm formation, with enzymes that synthesize and degrade c-di-GMP being controlled by diverse N-terminal sensor domains. Here, we describe a novel class of widely occurring c-di-GMP phosphodiesterases (PDE) that feature a periplasmic "CSS domain" with two highly conserved cysteines that is flanked by two transmembrane regions (TM1 and TM2) and followed by a cytoplasmic EAL domain with PDE activity. Using PdeC, one of the five CSS domain PDEs of Escherichia coli K-12, we show that DsbA/DsbB-promoted disulfide bond formation in the CSS domain reduces PDE activity. By contrast, the free thiol form is enzymatically highly active, with the TM2 region promoting dimerization. Moreover, this form is processed by periplasmic proteases DegP and DegQ, yielding a highly active TM2 + EAL fragment that is slowly removed by further proteolysis. Similar redox control and proteolysis was also observed for a second CSS domain PDE, PdeB. At the physiological level, CSS domain PDEs modulate production and supracellular architecture of extracellular matrix polymers in the deeper layers of mature E. coli biofilms.


Assuntos
Escherichia coli K12/fisiologia , Proteínas de Escherichia coli/metabolismo , Diester Fosfórico Hidrolases/metabolismo , Biofilmes , Membrana Celular/metabolismo , GMP Cíclico/análogos & derivados , GMP Cíclico/metabolismo , Oxirredução , Domínios Proteicos , Proteólise
7.
J Microbiol Methods ; 145: 93-97, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29288674

RESUMO

Cellular glycogen levels reflect the activity of RpoS, an important stress-inducible bacterial sigma factor known to regulate several stress-resistance related genes, such as katE, encoding hydroperoxidase II (HPII), and the glg genes, encoding glycogen synthesis enzymes, in Escherichia coli. In this study, a straightforward assay for measuring glycogen levels and RpoS activity was developed combining the ease and simplicity of qualitative approaches. The assay reagent was a 2% iodine solution (2% iodine/1M NaOH), and the basic principle of this assay is the iodine-glycogen reaction, which produces a reddish brown color that can be measured using a spectrophotometer. A calibration plot using a known amount of glycogen yielded the best linear fit over a range of 10-300µg/assay (R2=0.994). The applicability of the assay for measuring the glycogen level of various samples was assessed using a wild type (WT) E. coli K-12 strain, glycogen- and RpoS-deficient isogenic mutants, and clinical bacterial isolates with or without RpoS activity; the assay generated reproducible results. Additionally, the assay was successfully applied for measuring glycogen levels in human cells. In conclusion, we developed a straightforward and cost-effective assay for measuring glycogen levels, which can be applied for measuring RpoS activity.


Assuntos
Proteínas de Bactérias/metabolismo , Bioensaio/métodos , Escherichia coli K12/fisiologia , Glicogênio/análise , Fator sigma/metabolismo , Proteínas de Bactérias/genética , Catalase/metabolismo , Colorimetria , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/genética , Humanos , Iodo/farmacologia , Mutação , Células PC-3 , Sensibilidade e Especificidade , Fator sigma/genética , Estresse Fisiológico/efeitos dos fármacos , Estresse Fisiológico/genética
8.
PLoS Biol ; 15(6): e2001477, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28594817

RESUMO

Environmental stresses increase genetic variation in bacteria, plants, and human cancer cells. The linkage between various environments and mutational outcomes has not been systematically investigated, however. Here, we established the influence of nutritional stresses commonly found in the biosphere (carbon, phosphate, nitrogen, oxygen, or iron limitation) on both the rate and spectrum of mutations in Escherichia coli. We found that each limitation was associated with a remarkably distinct mutational profile. Overall mutation rates were not always elevated, and nitrogen, iron, and oxygen limitation resulted in major spectral changes but no net increase in rate. Our results thus suggest that stress-induced mutagenesis is a diverse series of stress input-mutation output linkages that is distinct in every condition. Environment-specific spectra resulted in the differential emergence of traits needing particular mutations in these settings. Mutations requiring transpositions were highest under iron and oxygen limitation, whereas base-pair substitutions and indels were highest under phosphate limitation. The unexpected diversity of input-output effects explains some important phenomena in the mutational biases of evolving genomes. The prevalence of bacterial insertion sequence transpositions in the mammalian gut or in anaerobically stored cultures is due to environmentally determined mutation availability. Likewise, the much-discussed genomic bias towards transition base substitutions in evolving genomes can now be explained as an environment-specific output. Altogether, our conclusion is that environments influence genetic variation as well as selection.


Assuntos
DNA Bacteriano , Escherichia coli K12/fisiologia , Interação Gene-Ambiente , Modelos Genéticos , Mutagênese , Mutação , Estresse Fisiológico , Carboidratos Epimerases/genética , Carboidratos Epimerases/metabolismo , Células Clonais , Análise por Conglomerados , DNA Bacteriano/metabolismo , Escherichia coli K12/genética , Escherichia coli K12/crescimento & desenvolvimento , Escherichia coli K12/isolamento & purificação , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Fermentação , Perfilação da Expressão Gênica , Regulação Bacteriana da Expressão Gênica , Mutação INDEL , Mutagênese Insercional , Taxa de Mutação , Mutação de Sentido Incorreto , Nutrigenômica/métodos , Mutação Puntual
9.
J Zhejiang Univ Sci B ; 18(5): 410-420, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28471113

RESUMO

OBJECTIVE: To investigate the antibacterial mechanism of high-mobility group nucleosomal-binding domain 2 (HMGN2) on Escherichia coli K12, focusing on the antibacterial and antibiofilm formation effects. Its chemotactic activity on human neutrophils was also investigated. METHODS: Human tissue-derived HMGN2 (tHMGN2) was extracted from fresh uterus fiber cystadenoma and purified by HP1100 reversed-phase high-performance liquid chromatography (RP-HPLC). Recombinant human HMGN2 (rHMGN2) was generated in E. coli DE3 carrying PET-32a-c(+)-HMGN2. Antibacterial activity of HMGN2 was determined using an agarose diffusion assay and minimum inhibitory concentration (MIC) of HMGN2 was determined by the microdilution broth method. Bacterial membrane permeability assay and DNA binding assay were performed. The antibiofilm effect of HMGN2 was investigated using a crystal violet assay and electron microscopy scanning. The activating effect and chemotactic activity of HMGN2 on neutrophils were determined using a nitroblue tetrazolium (NBT) reduction assay and Transwell chamber cell migration assay, respectively. RESULTS: HMGN2 showed a relatively high potency against Gram-negative bacteria E. coli and the MIC of HMGN2 was 16.25 µg/ml. Elevated bacterial membrane permeability was observed in HMGN2-treated E. coli K12. HMGN2 could also bind the bacterial plasmid and genomic DNA in a dose-dependent manner. The antibiofilm effect of HMGN2 on E. coli K12 was confirmed by crystal violet staining and scanning electron microscopy. However, the activating effects and chemotactic effects of HMGN2 on human neutrophils were not observed. CONCLUSIONS: As an antimicrobial peptide (AMP), HMGN2 possessed a good capacity for antibacterial and antibiofilm activities on E. coli K12. This capacity might be associated with disruption of the bacterial membrane and combination of DNA, which might affect the growth and viability of E. coli.


Assuntos
Antibacterianos/administração & dosagem , Permeabilidade da Membrana Celular/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/fisiologia , Proteína HMGN2/administração & dosagem , Sobrevivência Celular/efeitos dos fármacos , Sobrevivência Celular/fisiologia , Relação Dose-Resposta a Droga , Proteína HMGN2/genética , Humanos , Proteínas Recombinantes/administração & dosagem
10.
Acta Microbiol Immunol Hung ; 64(2): 179-189, 2017 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-27842452

RESUMO

Escherichia coli has developed sophisticated means to sense, respond, and adapt in stressed environment. It has served as a model organism for studies in molecular genetics and physiology since the 1960s. Stress response genes are induced whenever a cell needs to adapt and survive under unfavorable growth conditions. Two of the possible important genes are rpoS and bolA. The rpoS gene has been known as the alternative sigma (σ) factor, which controls the expression of a large number of genes, which are involved in responses to various stress factors as well as transition to stationary phase from exponential form of growth. Morphogene bolA response to stressed environment leads to round morphology of E. coli cells, but little is known about its involvement in biofilms and its development or maintenance. This study has been undertaken to address the adherence pattern and formation of biofilms by E. coli on stainless steel, polypropylene, and silicone surfaces after 24 h of growth at 37 °C. Scanning electron microscopy was used for direct examination of the cell attachment and biofilm formation on various surfaces and it was found that, in the presence of bolA, E. coli cells were able to attach to the stainless steel and silicone very well. By contrast, polypropylene surface was not found to be attractive for E. coli cells. This indicates that bolA responded and can play a major role in the presence and absence of rpoS in cell attachment.


Assuntos
Biofilmes , Escherichia coli K12/fisiologia , Proteínas de Escherichia coli/metabolismo , Polipropilenos/química , Aço Inoxidável/química , Fatores de Transcrição/metabolismo , Aderência Bacteriana , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Escherichia coli K12/genética , Proteínas de Escherichia coli/genética , Regulação Bacteriana da Expressão Gênica , Fator sigma/genética , Fator sigma/metabolismo , Silicones/química , Fatores de Transcrição/genética
11.
Mikrobiologiia ; 84(5): 512-28, 2015.
Artigo em Russo | MEDLINE | ID: mdl-27169240

RESUMO

Effect of sublethal doses of physical and chemical stressors (heat shock for 2 h at 45 degrees C and addition of C12-alkylhydroxybenzene, a microbial alarmone) on development of resistance to the subsequent lethal antibiotic attack and the role of the time interval between these treatments were studied on a submerged batch culture of Escherichia coli 12. The interval sufficient for the development of stress response provides for development of temporary adaptive resistance to the antibiotic attack, resulting in increased number of surviving persister cells. The interval below the time required for the stress response potentiates cell death and results in a decreased number of persisters. Heterogeneity of the fractions (10(-4) to 10(-2)% of the intial CFU number) surviving lethal doses of an antibiotic (a mpicillin or ciprofloxacin) was found. Apart from a low number of antibiotic-resistant cells (up to 0.005% of surviving cells), the fractions contained antibiotic-tolerant forms, such as temporarily resistant metabolically adapted cells, long-term persisters, and the cells of slowly growing SCV variants with small colonies (d ≤ 1 mm). Persisters are hypothesized to act as precursors for cystlike dormant cells (CLC), in which the cell differentiation stage is completed and the processes of cell ametabolism (transition to the anabiotic state) are still incomplete.


Assuntos
Adaptação Fisiológica/efeitos dos fármacos , Antibacterianos/farmacologia , Derivados de Benzeno/farmacologia , Farmacorresistência Bacteriana/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Adaptação Fisiológica/fisiologia , Ampicilina/farmacologia , Ciprofloxacina/farmacologia , Contagem de Colônia Microbiana , Farmacorresistência Bacteriana/fisiologia , Escherichia coli K12/fisiologia , Escherichia coli K12/ultraestrutura , Temperatura Alta , Testes de Sensibilidade Microbiana , Viabilidade Microbiana/efeitos dos fármacos , Estresse Fisiológico , Fatores de Tempo
12.
J Water Health ; 12(4): 763-71, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25473986

RESUMO

A quantitative polymerase chain reaction assay (115 bp amplicon) specific to Escherichia coli K12 with an ABI(TM) internal control was developed based on sequence data encoding the rfb gene cluster. Assay specificity was evaluated using three E. coli K12 strains (ATCC W3110, MG1655 & DH1), 24 non-K12 E. coli and 23 bacterial genera. The biofilm detection limit was 10(3) colony-forming units (CFU) E. coli K12 mL(-1), but required a modified protocol, which included a bio-blocker Pseudomonas aeruginosa with ethylenediaminetetraacetic acid buffered to pH 5 prior to cell lysis/DNA extraction. The novel protocol yielded the same sensitivity for drinking water biofilms associated with Fe3O4 (magnetite)-coated SiO2 (quartz) grains and biofilm-surface iron corrosion products from a drinking water distribution system. The novel DNA extraction protocol and specific E. coli K12 assay are sensitive and robust enough for detection and quantification within iron drinking water pipe biofilms, and are particularly well suited for studying enteric bacterial interactions within biofilms.


Assuntos
Biofilmes/crescimento & desenvolvimento , DNA Bacteriano/isolamento & purificação , Água Potável/microbiologia , Escherichia coli K12/fisiologia , Ferro/metabolismo , Abastecimento de Água/análise , Corrosão , DNA Bacteriano/genética , Escherichia coli K12/genética , Escherichia coli K12/isolamento & purificação , Limite de Detecção , Dados de Sequência Molecular , Pseudomonas aeruginosa/genética , Pseudomonas aeruginosa/isolamento & purificação , Pseudomonas aeruginosa/fisiologia , Reação em Cadeia da Polimerase em Tempo Real , Análise de Sequência de DNA , Especificidade da Espécie
13.
J Bacteriol ; 196(15): 2748-61, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24837288

RESUMO

Iron bioavailability is a major limiter of bacterial growth in mammalian host tissue and thus represents an important area of study. Escherichia coli K-12 metabolism was studied at four levels of iron limitation in chemostats using physiological and proteomic analyses. The data documented an E. coli acclimation gradient where progressively more severe iron scarcity resulted in a larger percentage of substrate carbon being directed into an overflow metabolism accompanied by a decrease in biomass yield on glucose. Acetate was the primary secreted organic by-product for moderate levels of iron limitation, but as stress increased, the metabolism shifted to secrete primarily lactate (∼70% of catabolized glucose carbon). Proteomic analysis reinforced the physiological data and quantified relative increases in glycolysis enzyme abundance and decreases in tricarboxylic acid (TCA) cycle enzyme abundance with increasing iron limitation stress. The combined data indicated that E. coli responds to limiting iron by investing the scarce resource in essential enzymes, at the cost of catabolic efficiency (i.e., downregulating high-ATP-yielding pathways containing enzymes with large iron requirements, like the TCA cycle). Acclimation to iron-limited growth was contrasted experimentally with acclimation to glucose-limited growth to identify both general and nutrient-specific acclimation strategies. While the iron-limited cultures maximized biomass yields on iron and increased expression of iron acquisition strategies, the glucose-limited cultures maximized biomass yields on glucose and increased expression of carbon acquisition strategies. This study quantified ecologically competitive acclimations to nutrient limitations, yielding knowledge essential for understanding medically relevant bacterial responses to host and to developing intervention strategies.


Assuntos
Adaptação Fisiológica , Escherichia coli K12/fisiologia , Regulação Bacteriana da Expressão Gênica , Glucose/metabolismo , Ferro/metabolismo , Proteômica , Proteínas de Bactérias/metabolismo , Biomassa , Carbono/metabolismo , Ciclo do Ácido Cítrico , Meios de Cultura , Eletroforese em Gel Bidimensional , Metabolismo Energético , Escherichia coli K12/crescimento & desenvolvimento , Glicólise , Ferro/análise , Espectrometria de Massas
14.
Microb Biotechnol ; 7(3): 265-75, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24628798

RESUMO

Olive mill wastes are sources of phenolic compounds with a wide array of biological activities, including antimicrobial effects. A potential option for bioremediation to overcome ecological problems is the reutilization of these natural compounds in food production. The aim of this work was to gain a better understanding of the antimicrobial mode of action of a phenols extract from olive vegetation water (PEOVW) at molecular level by studying Escherichia coli as a model microorganism. Genome-wide transcriptional analysis was performed on E. coli K-12 exposed to PEOVW. The repression of genes for flagellar synthesis and the involvement of genes linked to biofilm formation and stress response were observed. Sub-inhibitory concentrations of PEOVW significantly decreased biofilm formation, swarming and swimming motility, thus confirming the gene expression data. This study provides interesting insights on the molecular action of PEOVW on E. coli K-12. Given these anti-biofilm properties and considering that biofilm formation is a serious problem for the food industry and human health, PEOVW has proved to be a high-value natural product.


Assuntos
Biofilmes/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Locomoção/efeitos dos fármacos , Olea/química , Polifenóis/metabolismo , Anti-Infecciosos/metabolismo , Biofilmes/crescimento & desenvolvimento , Escherichia coli K12/fisiologia , Perfilação da Expressão Gênica
15.
Proc Natl Acad Sci U S A ; 110(38): 15265-70, 2013 Sep 17.
Artigo em Inglês | MEDLINE | ID: mdl-24003132

RESUMO

Ribosomes are the protein synthesizing factories of the cell, polymerizing polypeptide chains from their constituent amino acids. However, distinct combinations of amino acids, such as polyproline stretches, cannot be efficiently polymerized by ribosomes, leading to translational stalling. The stalled ribosomes are rescued by the translational elongation factor P (EF-P), which by stimulating peptide-bond formation allows translation to resume. Using metabolic stable isotope labeling and mass spectrometry, we demonstrate in vivo that EF-P is important for expression of not only polyproline-containing proteins, but also for specific subsets of proteins containing diprolyl motifs (XPP/PPX). Together with a systematic in vitro and in vivo analysis, we provide a distinct hierarchy of stalling triplets, ranging from strong stallers, such as PPP, DPP, and PPN to weak stallers, such as CPP, PPR, and PPH, all of which are substrates for EF-P. These findings provide mechanistic insight into how the characteristics of the specific amino acid substrates influence the fundamentals of peptide bond formation.


Assuntos
Escherichia coli K12/fisiologia , Fatores de Alongamento de Peptídeos/metabolismo , Prolina/metabolismo , Biossíntese de Proteínas/fisiologia , Ribossomos/metabolismo , Motivos de Aminoácidos/genética , Cromatografia Líquida , Escherichia coli K12/metabolismo , Humanos , Proteômica , Espectrometria de Massas em Tandem , beta-Galactosidase
16.
Microbiology (Reading) ; 159(Pt 10): 2036-2048, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23912937

RESUMO

An E. coli K-12 mutant deficient in S-adenosylmethionine (SAM) synthesis, i.e ΔmetK, but expressing a rickettsial SAM transporter, can grow in glucose minimal medium if provided with both SAM and methionine. It uses the externally provided (R)-enantiomer of SAM as methyl donor to produce most but not all of its methionine, by methylation of homocysteine catalysed by homocysteine methyltransferase (MmuM). The ΔmetK cells are also altered in growth and are twice as long as those of the parent strain. When starved of SAM, the mutant makes a small proportion of very long cells suggesting a role of SAM and of methylation in the onset of crosswall formation.


Assuntos
Carbono/metabolismo , Divisão Celular , Escherichia coli K12/fisiologia , Proteínas de Escherichia coli/metabolismo , Homocisteína S-Metiltransferase/metabolismo , Metionina Adenosiltransferase/deficiência , Metionina/biossíntese , Meios de Cultura/química , Escherichia coli K12/citologia , Escherichia coli K12/genética , Escherichia coli K12/metabolismo , Glucose/metabolismo , S-Adenosilmetionina/metabolismo
17.
Langmuir ; 29(11): 3773-9, 2013 Mar 19.
Artigo em Inglês | MEDLINE | ID: mdl-23425314

RESUMO

In this work, we demonstrate a convenient, efficient, and environmentally benign strategy to achieving antimicrobial and antiadhesive purposes using a silver-zwitterion nanocomposite. The synthesis of the nanocomposite relies on loading zwitterionic polymer brushes with Ag(+) precursor ions, followed by their in situ reduction to Ag nanoparticle by ultraviolet (UV) irradiation. Both poly(sulfobetaine methacrylate) (pSBMA) and poly(carboxybetaine methacrylate) (pCBMA) have been studied as matrices for the embedding of silver. Well-dispersed silver nanoparticles are embedded into pCBMA matrices. The obtained pCBMA-silver hybrid (CB-Ag) is capable of killing bacteria upon contact and releasing dead bacteria under wet conditions. Results suggest the feasibility of using this nanocomposite system as a robust and reliable antimicrobial and antiadhesive platform for the prevention of microbial colonization.


Assuntos
Anti-Infecciosos/química , Anti-Infecciosos/farmacologia , Betaína/química , Nanocompostos/química , Ácidos Polimetacrílicos/química , Prata/química , Adesividade/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/fisiologia , Viabilidade Microbiana/efeitos dos fármacos , Propriedades de Superfície , Fatores de Tempo
18.
Infect Immun ; 80(10): 3429-37, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22825446

RESUMO

Exposing mice to a social stressor called social disruption (SDR) that involves repeated social defeat during intermale aggression results in increased circulating cytokines, such as interleukin-1α (IL-1α) and IL-1ß, and increased reactivity of splenic CD11b(+) macrophages to inflammatory stimuli. For example, upon lipopolysaccharide stimulation, macrophages from stressor-exposed mice produce higher levels of cytokines than do cells from nonstressed controls. Moreover, the SDR stressor enhances the ability of these macrophages to kill Escherichia coli both in vitro and in vivo, through a Toll-like receptor 4-dependent mechanism. The present study tested the hypothesis that stressor-enhanced bacterial killing is due to increases in the production of peroxynitrite. Male mice were exposed to the SDR stressor or were left undisturbed. Upon stimulation with E. coli, splenic macrophages from SDR-exposed mice expressed significantly increased levels of inducible nitric oxide synthase mRNA and produced higher levels of peroxynitrite. Blocking the production of peroxynitrite abrogated the SDR-induced increase in microbicidal activity. Studies in IL-1 receptor type 1 knockout mice indicated that the increased microbicidal activity and peroxynitrite production was dependent upon IL-1 signaling. These data confirm and extend the importance of IL-1 signaling for stressor-induced immunopotentiation; the finding that inhibiting superoxide or nitric oxide production inhibits both peroxynitrite production and killing of E. coli demonstrates that peroxynitrite mediates the stressor-induced increase in bacterial killing.


Assuntos
Escherichia coli K12/fisiologia , Macrófagos/fisiologia , Ácido Peroxinitroso/metabolismo , Baço/citologia , Agressão , Animais , Comportamento Animal , Antígeno CD11b/genética , Antígeno CD11b/metabolismo , Interleucina-1/fisiologia , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Nitrogênio/metabolismo , Ácido Peroxinitroso/genética , Receptores de Interleucina-1/genética , Receptores de Interleucina-1/metabolismo , Predomínio Social , Estresse Fisiológico
19.
Proc Natl Acad Sci U S A ; 109(18): 6957-62, 2012 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-22509007

RESUMO

Cell division in typical rod-shaped bacteria such as Escherichia coli shows a remarkable plasticity in being able to adapt to a variety of irregular cell shapes. Here, we investigate the roles of the Min system and the nucleoid-occlusion factor SlmA in supporting this adaptation. We study "squeezed" E. coli in narrow nanofabricated channels where these bacteria exhibit highly irregular shapes and large volumes. Despite the severely anomalous morphologies we find that most of these bacteria maintain their ability to divide into two equally sized daughters with an accuracy comparable to that of normal rod-shaped cells (about 4%). Deletion of either slmA or minC shows that the molecular systems associated with these genes are largely dispensable for accurate cell division in these irregular cell shapes. Using fluorescence time-lapse microscopy, we determine that the functionality of the Min system is affected by the cell shape, whereas the localization of a nucleoid relative to the cell division proteins (the divisome) remains unperturbed in a broad spectrum of morphologies, consistent with nucleoid occlusion. The observed positioning of the nucleoid relative to the divisome appears not to be affected by the nucleoid-occlusion factor SlmA. The current study underscores the importance of nucleoid occlusion in positioning the divisome and shows that it is robust against shape irregularities.


Assuntos
Divisão Celular/fisiologia , Escherichia coli K12/citologia , Escherichia coli K12/fisiologia , Adenosina Trifosfatases/genética , Adenosina Trifosfatases/fisiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/fisiologia , Fenômenos Biofísicos , Proteínas de Transporte/genética , Proteínas de Transporte/fisiologia , Divisão Celular/genética , Proteínas do Citoesqueleto/genética , Proteínas do Citoesqueleto/fisiologia , Proteínas de Ligação a DNA , Escherichia coli K12/genética , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/fisiologia , Deleção de Genes , Genes Bacterianos , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Membrana/genética , Proteínas de Membrana/fisiologia , Técnicas Analíticas Microfluídicas/instrumentação , Microscopia de Fluorescência , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Imagem com Lapso de Tempo
20.
Antonie Van Leeuwenhoek ; 101(2): 423-31, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21965040

RESUMO

Base excision repair (BER) is dedicated to the repair of oxidative DNA damage caused by reactive oxygen species generated by chemical and physical agents or by metabolism which can react with DNA and cause a variety of mutations. Epithelial cells are typically the first type of host cell to come into contact with potential microbial invaders. In this work, we have evaluated whether the adherence to human epithelial cells causes DNA damage and associated filamentation. Experiments concerning adherence to HEp-2 cells were carried out with mutants deficient in BER that were derived from Escherichia coli K-12. Since the removal of mannose during bacterial interaction with HEp-2 cells allows adhesion through mannose-sensitive adhesins, the experiments were also performed in the presence and the absence of mannose. Our results showed enhanced filamentation for the single xth (BW9091) and triple xth nfo nth (BW535) mutants in adherence assays with HEp-2 cells performed without D: -mannose. The increased filamentation growth was inhibited by complementation of BER mutants with a wild type xth gene. Moreover, we measured SOS induction of bacteria adhered to HEp-2 cells in the presence and absence of D: -mannose through of SOS-chromotest assay and we observed a higher ß-galactosidase expression in the absence of mannose. In this context, data showed evidence that bacterial attachment to HEp-2 epithelial surfaces can generate DNA lesions and SOS induction.


Assuntos
Aderência Bacteriana , Reparo do DNA , Células Epiteliais/microbiologia , Infecções por Escherichia coli/microbiologia , Escherichia coli K12/citologia , Escherichia coli K12/genética , Linhagem Celular Tumoral , Dano ao DNA , Escherichia coli K12/fisiologia , Humanos , Manose/metabolismo , Resposta SOS em Genética
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