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1.
Mikrochim Acta ; 191(7): 368, 2024 06 04.
Artigo em Inglês | MEDLINE | ID: mdl-38833176

RESUMO

A colorimetric analysis platform has been successfully developed based on FeCo-NC dual-atom nanozyme (FeCo-NC DAzyme) for the detection of organophosphorus pesticides (OPPs). The FeCo-NC DAzyme exhibited exceptional oxidase-like activity (OXD), enabling the catalysis of colorless TMB to form blue oxidized TMB (oxTMB) without the need for H2O2 involvement. By combining acid phosphatase (ACP) hydrolase with FeCo-NC DAzyme, a "FeCo-NC DAzyme + TMB + ACP + SAP" colorimetric system was constructed, which facilitated the rapid detection of malathion. The chromogenic system was applied to detect malathion using a smartphone-based app and an auxiliary imaging interferogram device for colorimetric measurements, which have a linear range of 0.05-4.0 µM and a limit of detection (LOD) as low as 15 nM in real samples, comparable to UV-Vis and HPLC-DAD detection methods. Overall, these findings present a novel approach for convenient, rapid, and on-site monitoring of OPPs.


Assuntos
Colorimetria , Limite de Detecção , Praguicidas , Smartphone , Colorimetria/métodos , Praguicidas/análise , Compostos Organofosforados/análise , Compostos Organofosforados/química , Malation/análise , Malation/química , Oxirredutases/química , Ferro/química , Fosfatase Ácida/análise , Fosfatase Ácida/química , Benzidinas
2.
J Mol Recognit ; 36(9): e3049, 2023 09.
Artigo em Inglês | MEDLINE | ID: mdl-37553866

RESUMO

Helicobacter pylori is the most common cause of gastric ulcers and is associated with gastric cancer. The enzyme HppA of class C nonspecific acid phosphohydrolases (NSAPs) of H. pylori plays a crucial role in the electron transport chain. Herein, we report an in silico homology model of HppA consisting of a monomeric α + ß model. A high throughput structure-based virtual screening approach yielded potential inhibitors against HppA with higher binding energies. Further analyses of molecular interaction maps and protein-ligand fingerprints, followed by molecular mechanics-generalized Born surface area (MM-GBSA) end point binding energy calculations of docked complexes, resulted in the detection of top binders/ligands. Our investigations identified potential substrate-competitive small molecule inhibitors of HppA, with admissible pharmacokinetic properties. These molecules may provide a starting point for developing novel therapeutic agents against H. pylori.


Assuntos
Fosfatase Ácida , Helicobacter pylori , Fosfatase Ácida/química , Fosfatase Ácida/metabolismo , Helicobacter pylori/química , Helicobacter pylori/metabolismo , Simulação de Dinâmica Molecular , Ensaios de Triagem em Larga Escala , Simulação de Acoplamento Molecular
3.
Int J Biol Macromol ; 224: 20-31, 2023 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-36481331

RESUMO

Acid phosphatase (ACP) is a key enzyme in the regulation of phosphate feeding in plants. In this study, a new ACP from C. oxyacantha was isolated to homogeneity and biochemically described for the first time. Specific activity (283 nkat/mg) was found after 2573 times purification fold and (17 %) yield. Using SDS-PAGE under denaturing and nondenaturing conditions, ACP was isolated as a monomer with a molecular weight of 36 kDa. LC-MS/MS confirmed the presence of this band, suggesting that C. oxycantha ACP is a monomer. The enzyme could also hydrolyze orthophosphate monoester with an optimal pH of 5.0 and a temperature of 50 °C. Thermodynamic parameters were also determined (Ea, ΔH°, ΔG°, and ΔS°). ACP activity was further studied in the presence of cysteine, DTT, SDS, EDTA, ß-ME, Triton-X-100 H2O2, and PMSF. The enzyme had a Km of 0.167 mM and an Ea of 9 kcal/mol for p-nitrophenyl phosphate. The biochemical properties of the C. oxyacantha enzyme distinguish it from other plant acid phosphatases and give a basic understanding of ACP in C. oxyacantha. The results of this investigation also advance our knowledge about the biochemical significance of ACP in C. oxyacantha. Thermal stability over a wide pH and temperature range make it more suitable for use in harsh industrial environments. However, further structural and physiological studies are anticipated to completely comprehend its important aspects in oxyacantha species.


Assuntos
Fosfatase Ácida , Plântula , Fosfatase Ácida/química , Plântula/metabolismo , Cromatografia Líquida , Peróxido de Hidrogênio , Concentração de Íons de Hidrogênio , Espectrometria de Massas em Tandem , Termodinâmica , Temperatura , Fosfatos , Cinética , Peso Molecular , Especificidade por Substrato
4.
Environ Sci Technol ; 56(22): 16441-16452, 2022 11 15.
Artigo em Inglês | MEDLINE | ID: mdl-36283689

RESUMO

Among ubiquitous phosphorus (P) reserves in environmental matrices are ribonucleic acid (RNA) and polyphosphate (polyP), which are, respectively, organic and inorganic P-containing biopolymers. Relevant to P recycling from these biopolymers, much remains unknown about the kinetics and mechanisms of different acid phosphatases (APs) secreted by plants and soil microorganisms. Here we investigated RNA and polyP dephosphorylation by two common APs, a plant purple AP (PAP) from sweet potato and a fungal phytase from Aspergillus niger. Trends of δ18O values in released orthophosphate during each enzyme-catalyzed reaction in 18O-water implied a different extent of reactivity. Subsequent enzyme kinetics experiments revealed that A. niger phytase had 10-fold higher maximum rate for polyP dephosphorylation than the sweet potato PAP, whereas the sweet potato PAP dephosphorylated RNA at a 6-fold faster rate than A. niger phytase. Both enzymes had up to 3 orders of magnitude lower reactivity for RNA than for polyP. We determined a combined phosphodiesterase-monoesterase mechanism for RNA and terminal phosphatase mechanism for polyP using high-resolution mass spectrometry and 31P nuclear magnetic resonance, respectively. Molecular modeling with eight plant and fungal AP structures predicted substrate binding interactions consistent with the relative reactivity kinetics. Our findings implied a hierarchy in enzymatic P recycling from P-polymers by phosphatases from different biological origins, thereby influencing the relatively longer residence time of RNA versus polyP in environmental matrices. This research further sheds light on engineering strategies to enhance enzymatic recycling of biopolymer-derived P, in addition to advancing environmental predictions of this P recycling by plants and microorganisms.


Assuntos
6-Fitase , 6-Fitase/química , 6-Fitase/genética , 6-Fitase/metabolismo , Fósforo , Monoéster Fosfórico Hidrolases/metabolismo , Cinética , Simulação de Acoplamento Molecular , Fosfatase Ácida/química , Fosfatase Ácida/genética , Fosfatase Ácida/metabolismo , Polifosfatos , Isótopos , Biopolímeros , RNA
5.
mBio ; 13(3): e0103422, 2022 06 28.
Artigo em Inglês | MEDLINE | ID: mdl-35536002

RESUMO

Inositol pyrophosphates (IPPs) are signaling molecules that regulate cellular phosphate homeostasis in diverse eukaryal taxa. In fission yeast, mutations that increase 1,5-IP8 derepress the PHO regulon while mutations that ablate IP8 synthesis are PHO hyper-repressive. Fission yeast Asp1, the principal agent of 1,5-IP8 dynamics, is a bifunctional enzyme composed of an N-terminal IPP kinase domain and a C-terminal IPP pyrophosphatase domain. Here we conducted a biochemical characterization and mutational analysis of the autonomous Asp1 kinase domain (aa 1-385). Reaction of Asp1 kinase with IP6 and ATP resulted in both IP6 phosphorylation to 1-IP7 and hydrolysis of the ATP γ-phosphate, with near-equal partitioning between productive 1-IP7 synthesis and unproductive ATP hydrolysis under optimal kinase conditions. By contrast, reaction of Asp1 kinase with 5-IP7 is 22-fold faster than with IP6 and is strongly biased in favor of IP8 synthesis versus ATP hydrolysis. Alanine scanning identified essential constituents of the active site. We deployed the Ala mutants to show that derepression of pho1 expression correlated with Asp1's kinase activity. In the case of full-length Asp1, the activity of the C-terminal pyrophosphatase domain stifled net phosphorylation of the 1-position during reaction of Asp1 with ATP and either IP6 or 5-IP7. We report that inorganic phosphate is a concentration-dependent enabler of net IP8 synthesis by full-length Asp1 in vitro, by virtue of its antagonism of IP8 turnover. IMPORTANCE Expression of the fission yeast phosphate regulon is sensitive to the intracellular level of the inositol pyrophosphate (IPP) signaling molecule 1,5-IP8. IP8 dynamics are determined by Asp1, a bifunctional enzyme comprising N-terminal IPP 1-kinase and C-terminal IPP 1-pyrophosphatase domains that catalyze IP8 synthesis and catabolism, respectively. Here, we interrogated the activities and specificities of the Asp1 kinase domain and full length Asp1. We find that reaction of Asp1 kinase with 5-IP7 is 22-fold faster than with IP6 and is strongly biased in favor of IP8 synthesis versus the significant unproductive ATP hydrolysis seen during its reaction with IP6. We report that full-length Asp1 catalyzes futile cycles of 1-phosphate phosphorylation by its kinase component and 1-pyrophosphate hydrolysis by its pyrophosphatase component that result in unproductive net consumption of the ATP substrate. Net synthesis of 1,5-IP8 is enabled by physiological concentrations of inorganic phosphate that selectively antagonize IP8 turnover.


Assuntos
Fosfatase Ácida , Proteínas de Schizosaccharomyces pombe , Schizosaccharomyces , Fosfatase Ácida/química , Fosfatase Ácida/metabolismo , Trifosfato de Adenosina/metabolismo , Difosfatos/metabolismo , Expressão Gênica , Fosfatos de Inositol/metabolismo , Enzimas Multifuncionais/genética , Enzimas Multifuncionais/metabolismo , Fosfotransferases (Aceptor do Grupo Fosfato)/genética , Pirofosfatases/genética , Pirofosfatases/metabolismo , Schizosaccharomyces/genética , Schizosaccharomyces/metabolismo , Proteínas de Schizosaccharomyces pombe/química , Proteínas de Schizosaccharomyces pombe/genética , Proteínas de Schizosaccharomyces pombe/metabolismo
6.
Int J Mol Sci ; 22(21)2021 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-34769193

RESUMO

BACKGROUND: Acid phosphatase and its regulation are important objects of biological and clinical research and play an important role in the development and treatment of prostate and bone diseases. The newly patented aminoalkanol (4-[2-hydroxy-3-(propan-2-ylamino)propyl]-1,7-dimethyl-8,9-diphenyl-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5,10-trione hydrochloride) (I) and (4-[3-(dimethylamino)-2-hydroxypropyl]-1,7-dimethyl-8,9-diphenyl-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5,10-trione hydrochloride) (II) derivatives have potential anticancer activity, and their influence on enzymatic activity can significantly impact the therapeutic effects of acid phosphatase against many diseases. Therefore, in this study, we investigated the action of compounds (I) and (II) on acid phosphatase. METHODS: Capillary electrophoresis was used to evaluate the inhibition of acid phosphatase. Lineweaver-Burk plots were constructed to compare the Km of this enzyme in the presence of inhibitors (I) or (II) with the Km in solutions without these inhibitors. RESULTS: Compound (I) showed a stronger competitive inhibition against acid phosphatase, whereas derivative (II) showed a weaker competitive type of inhibition. The detailed kinetic studies of these compounds showed that their type and strength of inhibition as well as affinity depend on the kind of substituent occurring in the main chemical molecule. CONCLUSIONS: This study is of great importance because the disclosed inhibition of acid phosphatase by compounds (I) and (II) raises the question of whether these compounds could have any effect on the treatment possibilities of prostate diseases.


Assuntos
Fosfatase Ácida/antagonistas & inibidores , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Próstata/enzimologia , Fosfatase Ácida/química , Fosfatase Ácida/metabolismo , Amino Álcoois/química , Amino Álcoois/farmacologia , Antineoplásicos/química , Antineoplásicos/farmacologia , Descoberta de Drogas , Humanos , Cinética , Masculino , Simulação de Acoplamento Molecular , Próstata/química , Próstata/efeitos dos fármacos , Próstata/metabolismo
7.
Front Immunol ; 12: 715245, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34394119

RESUMO

The apextrin C-terminal (ApeC) domain is a class of newly discovered protein domains with an origin dating back to prokaryotes. ApeC-containing proteins (ACPs) have been found in various marine and aquatic invertebrates, but their functions and the underlying mechanisms are largely unknown. Early studies suggested that amphioxus ACP1 and ACP2 bind to bacterial cell walls and have a role in immunity. Here we identified another two amphioxus ACPs (ACP3 and ACP5), which belong to the same phylogenetic clade with ACP1/2, but show distinct expression patterns and sequence divergence (40-50% sequence identities). Both ACP3 and ACP5 were mainly expressed in the intestine and hepatic cecum, and could be up-regulated after bacterial challenge. Both prokaryotic-expressed recombinant ACP3 and ACP5 could bind with several species of bacteria and yeasts, showing agglutinating activity but no microbicidal activity. ELISA assays suggested that their ApeC domains could interact with peptidoglycan (PGN), but not with lipoteichoic acid (LTA), lipopolysaccharides (LPS) and zymosan A. Furthermore, they can only bind to Lys-type PGN from Staphylococcus aureus, but not to DAP-type PGN from Bacillus subtilis and not to moieties of PGN such as MDPs, NAMs and NAGs. This recognition spectrum is different from that of ACP1/2. We also found that when expressed in mammalian cells, ACP3 could interact with TRAF6 via a conserved non-ApeC region, which inhibited the ubiquitination of TRAF6 and hence suppressed downstream NF-κB activation. This work helped define a novel subfamily of ACPs, which have conserved structures, and have related yet diversified molecular functions. Its members have dual roles, with ApeC as a lectin and a conserved unknown region as a signal transduction regulator. These findings expand our understanding of the ACP functions and may guide future research on the role of ACPs in different animal clades.


Assuntos
Fosfatase Ácida/metabolismo , Interações entre Hospedeiro e Microrganismos , Domínios e Motivos de Interação entre Proteínas , Transdução de Sinais , Fator 6 Associado a Receptor de TNF/metabolismo , Fosfatase Ácida/química , Fosfatase Ácida/genética , Sequência de Aminoácidos , Animais , Linhagem Celular Tumoral , Parede Celular/imunologia , Parede Celular/metabolismo , Clonagem Molecular , Biologia Computacional/métodos , Bases de Dados Genéticas , Expressão Gênica , Perfilação da Expressão Gênica , Humanos , Invertebrados , Ligação Proteica , Staphylococcus aureus/imunologia , Staphylococcus aureus/metabolismo
8.
Int J Biol Macromol ; 165(Pt B): 2253-2266, 2020 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-33098900

RESUMO

Purple acid phosphatases (PAPs), a family of metallo-phosphoesterase enzymes, are involved in phosphorus nutrition in plants. In this study, we report that the tomato genome encodes 25 PAP members. Physio-biochemical analyses revealed relatively lower total root-associated acid phosphatase activity in the seedlings of Solanum pimpinellifolium than their cultivated tomato seedlings under Pi deficiency. Scrutiny of their transcript abundance shows that most of PAPs are activated, although to varying levels, under Pi deficiency in tomato. Further investigation demonstrates that the magnitude of induction of phosphate starvation inducible root-associated PAP homologs remains lower in the Pi-starved S. pimpinellifolium seedlings, hence, accounting for the lower acid phosphatase activity in this wild relative. Examination of their amino acid sequences revealed significant variation in their substrate-specificity defining residues. Among all members, only SlPAP15 possesses the critical lysine residue (R337) and atypical REKA motif in its C-terminal region. Homology modeling and docking studies revealed that ADP and ATP are preferred substrates of SlPAP15. We also identified other amino acid residues present in the vicinity of the active site, possibly facilitating such physical interactions. Altogether, the results presented here will help in the functional characterization of these genes in the tomato in the future.


Assuntos
Fosfatase Ácida/química , Fosfatase Ácida/genética , Regulação Enzimológica da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Fosfatos/deficiência , Solanum lycopersicum/enzimologia , Solanum lycopersicum/genética , Fosfatase Ácida/metabolismo , Difosfato de Adenosina/metabolismo , Trifosfato de Adenosina/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Sítios de Ligação , Cromossomos de Plantas/genética , Perfilação da Expressão Gênica , Ligantes , Solanum lycopersicum/crescimento & desenvolvimento , Simulação de Acoplamento Molecular , Anotação de Sequência Molecular , Filogenia , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Plântula/enzimologia , Especificidade por Substrato
9.
J Am Chem Soc ; 142(40): 17024-17038, 2020 10 07.
Artigo em Inglês | MEDLINE | ID: mdl-32926779

RESUMO

Broad-spectrum antivirals are powerful weapons against dangerous viruses where no specific therapy exists, as in the case of the ongoing SARS-CoV-2 pandemic. We discovered that a lysine- and arginine-specific supramolecular ligand (CLR01) destroys enveloped viruses, including HIV, Ebola, and Zika virus, and remodels amyloid fibrils in semen that promote viral infection. Yet, it is unknown how CLR01 exerts these two distinct therapeutic activities. Here, we delineate a novel mechanism of antiviral activity by studying the activity of tweezer variants: the "phosphate tweezer" CLR01, a "carboxylate tweezer" CLR05, and a "phosphate clip" PC. Lysine complexation inside the tweezer cavity is needed to antagonize amyloidogenesis and is only achieved by CLR01. Importantly, CLR01 and CLR05 but not PC form closed inclusion complexes with lipid head groups of viral membranes, thereby altering lipid orientation and increasing surface tension. This process disrupts viral envelopes and diminishes infectivity but leaves cellular membranes intact. Consequently, CLR01 and CLR05 display broad antiviral activity against all enveloped viruses tested, including herpesviruses, Measles virus, influenza, and SARS-CoV-2. Based on our mechanistic insights, we potentiated the antiviral, membrane-disrupting activity of CLR01 by introducing aliphatic ester arms into each phosphate group to act as lipid anchors that promote membrane targeting. The most potent ester modifications harbored unbranched C4 units, which engendered tweezers that were approximately one order of magnitude more effective than CLR01 and nontoxic. Thus, we establish the mechanistic basis of viral envelope disruption by specific tweezers and establish a new class of potential broad-spectrum antivirals with enhanced activity.


Assuntos
Antivirais/química , Antivirais/farmacologia , Hidrocarbonetos Aromáticos com Pontes/farmacologia , Organofosfatos/farmacologia , Proteínas do Envelope Viral/efeitos dos fármacos , Fosfatase Ácida/química , Fosfatase Ácida/metabolismo , Amiloide/antagonistas & inibidores , Fármacos Anti-HIV/química , Fármacos Anti-HIV/farmacologia , Arginina/química , Betacoronavirus/efeitos dos fármacos , Hidrocarbonetos Aromáticos com Pontes/química , Membrana Celular/química , Membrana Celular/efeitos dos fármacos , Membrana Celular/virologia , Infecções por HIV/tratamento farmacológico , HIV-1/efeitos dos fármacos , Humanos , Lipídeos/química , Lisina/química , Espectroscopia de Ressonância Magnética , Organofosfatos/química , SARS-CoV-2 , Proteínas Secretadas pela Vesícula Seminal/química , Proteínas Secretadas pela Vesícula Seminal/metabolismo , Relação Estrutura-Atividade , Proteínas do Envelope Viral/metabolismo , Zika virus/efeitos dos fármacos
10.
Mikrochim Acta ; 187(6): 357, 2020 05 28.
Artigo em Inglês | MEDLINE | ID: mdl-32468344

RESUMO

The preparation of aggregation-induced emission-type copper nanoclusters (CuNCs) capped with polydopamine (PDA) is described. PDA was formed via in situ polymerization of dopamine in the presence of alkaline polyethylenimine. The PDA-capped CuNCs (PDA-CuNCs) exhibit orange fluorescence with maximal emission at 580 nm upon excitation at 340 nm, a storage stability of at least 2 weeks, and a quantum yield (QY) of 2.54% in aqueous solution. The QY is 28-fold higher than that of sole CuNCs. The fluorescence of the PDA-CuNCs is quenched by Fe3+ ion while it is recovered by PO43- due to its stronger affinity for Fe3+. On this basis, a fluorometric phosphate assay was developed that has a 1.5 nM detection limit and a linear range over 0.003-70 µM. The method was satisfactorily applied to the determination of phosphate in local tap water and human sera, and the results agreed well with those obtained by a colorimetric method. In the presence of acid phosphatase (ACP), PO43- is produced by the catalytic hydrolysis of adenosine triphosphate (ACP substrate). Thus, a fluorogenic assay for screening ACP activity was established. Response is linear over the activity range 0.0012-25 U L-1, with a detection limit of 0.001 U L-1 (at S/N = 3). Graphic abstract We proposed an effective polydopamine-templating strategy for the in situ synthesis of highly emissive and stable CuNCs and demonstrated its use as an ion-driven fluorescence switch for the determination of phosphate and acid phosphatase activity.


Assuntos
Fosfatase Ácida/análise , Corantes Fluorescentes/química , Indóis/química , Nanopartículas Metálicas/química , Fosfatos/sangue , Polímeros/química , Espectrometria de Fluorescência/métodos , Fosfatase Ácida/química , Trifosfato de Adenosina/química , Cobre/química , Água Potável/análise , Ensaios Enzimáticos/métodos , Humanos , Ferro/química , Limite de Detecção
11.
Mikrochim Acta ; 186(8): 558, 2019 07 23.
Artigo em Inglês | MEDLINE | ID: mdl-31338595

RESUMO

The author describe a method for preparation of green fluorescent nitrogen-doped carbon dots (N-CDs) through hydrothermal treatment of a mixture of lotus leaf juice and ethylenediamine (EDA). The N-CDs have uniform size, good dispersibility and water solubility. Under 316 and 366 nm photoexcitation, they show dual fluorescence with emission peaks at 415 and 509 nm, respectively. They are positively charge and display low cytotoxicity. This makes them an excellent choice for fluorometric assays and for bioimaging. A ratiometric assay was developed for the determination of the activity of acid phosphatase (ACP). It is based on the aggregation- induced quenching (AIQ) of the fluorescence of the N-CDs by sodium hexametaphosphate (NaPO3)6. Enzymatic hydrolysis of (NaPO3)6 by ACP leads to the disintegration of (NaPO3)6 and to the restoration of fluorescence. The measurement of the ratio of fluorescence at two wavelengths (415 and 509 nm), background interference and fluctuating signals can be widely eliminated. The method works in the 1-50 U·L-1 ACP activity range and has a detection limit of 0.43 U·L-1. It was successfully applied (a) to the determination of ACP in spiked serum samples, (b) to ACP inhibitor screening, and (c) to imaging of ACP in HePG2 cells. Graphical abstract Schematic presentation of the synthesis of nitrogen-doped carbon dots (N-CDs), and their application to the ratiometric fluorometric determination of acid phosphatase (ACP) based on the aggregation-induced quenching and enzymatic hydrolysis.


Assuntos
Fosfatase Ácida , Carbono/química , Corantes Fluorescentes/química , Nitrogênio/química , Fosfatase Ácida/análise , Fosfatase Ácida/antagonistas & inibidores , Fosfatase Ácida/sangue , Fosfatase Ácida/química , Química Verde , Células Hep G2 , Humanos , Lotus , Fosfatos/química , Extratos Vegetais/química , Folhas de Planta
12.
Chembiochem ; 20(12): 1536-1540, 2019 06 14.
Artigo em Inglês | MEDLINE | ID: mdl-30719821

RESUMO

Purple acid phosphatases (PAPs) are members of the large family of metallohydrolases, a group of enzymes that perform a wide range of biological functions, while employing a highly conserved catalytic mechanism. PAPs are found in plants, animals and fungi; in humans they play an important role in bone turnover and are thus of interest for developing treatments for osteoporosis. The majority of metallohydrolases use a metal-bound hydroxide to initiate catalysis, which leads to the formation of a proposed five-coordinate oxyphosphorane species in the transition state. In this work, we crystallized PAP from red kidney beans (rkbPAP) in the presence of both adenosine and vanadate. The in crystallo-formed vanadate analogue of ADP provides detailed insight into the binding mode of a PAP substrate, captured in a structure that mimics the putative fivecoordinate transition state. Our observations not only provide unprecedented insight into the mechanism of metallohydrolases, but might also guide the structure-based design of inhibitors for application in the treatment of several human illnesses.


Assuntos
Fosfatase Ácida/química , Proteínas de Plantas/química , Catálise , Domínio Catalítico , Cinética , Modelos Moleculares , Phaseolus/metabolismo , Vanadatos/química
13.
Molecules ; 23(12)2018 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-30544943

RESUMO

PAP248⁻286, a 39 amino acid peptide fragment, derived from the prostatic acid phosphatase secreted in human semen, forms amyloid fibrils and facilitates the attachment of retroviruses to host cells that results in the enhancement of viral infection. Therefore, the inhibition of amyloid formation by PAP248⁻286 (termed PAP f39) may likely reduce HIV transmission in AIDS. In this study, we show that the naphthoquinone tryptophan (NQTrp) hybrid molecule significantly inhibited PAP f39 aggregation in vitro in a dose-dependent manner as observed from the ThT assay, ANS assay, and transmission electron microscopy imaging. We found that even at a sub-molar concentration of 20:1 [PAP f39:NQTrp], NQTrp could reduce >50% amyloid formation. NQTrp inhibition of PAP f39 aggregation resulted in non-toxic intermediate species as determined by the vesicle leakage assay. Isothermal titration calorimetry and molecular docking revealed that the binding of NQTrp and PAP f39 is spontaneous, and NQTrp predominantly interacts with the polar and charged residues of the peptide by forming hydrogen bonds and hydrophobic contacts with a strong binding energy. Collectively, these findings indicate that NQTrp holds significant potential as a small molecule inhibitor of semen amyloids.


Assuntos
Fosfatase Ácida/metabolismo , Amiloide/metabolismo , Naftoquinonas/química , Naftoquinonas/farmacologia , Fosfatase Ácida/química , Amiloide/antagonistas & inibidores , Sítios de Ligação , Corantes/química , Vermelho Congo/química , Relação Dose-Resposta a Droga , Simulação de Acoplamento Molecular , Naftoquinonas/administração & dosagem , Fragmentos de Peptídeos/metabolismo , Conformação Proteica , Termodinâmica , Triptofano/química
14.
Bull Environ Contam Toxicol ; 101(3): 380-385, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-30027446

RESUMO

A pot-culture was conducted in Completely Randomized Design with three replicates to study the effect of Pb and Ni on enzymatic activities in a Vertisols. Results indicated that increasing in the levels of Pb from 0, 100, 150 and 300 mg kg-1 soil significantly reduced the dehydrogenase activity (DHA) 38.9, 32.1, 30.9, 18.1 µg triphenylformazan g-1 soil 24 h-1; acid phosphatase activities 73, 61, 58, 55 µg PNP g-1 soil h-1 and alkaline phosphatase activities 80.7, 69.4, 66.2 and 64.0 µg PNP g-1 soil h-1, respectively. Application of Ni up to 100 mg kg-1 had significantly improved the soil enzymatic activities and thereafter there was no such change up to the highest level (300 mg Ni kg-1). Among soil enzymatic activities, DHA was more sensitive to Pb application. The findings generated through this study can be useful for managing waste water for safe disposal as well as sustainable crop production.


Assuntos
Chumbo/análise , Níquel/análise , Poluentes do Solo/análise , Solo/química , Fosfatase Ácida/química , Fosfatase Alcalina/química , Monitoramento Ambiental , Índia , Oxirredutases/química
15.
Methods Mol Biol ; 1511: 151-161, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-27730609

RESUMO

Autolysosomes are organelles that sequester and degrade a portion of the cytoplasm during autophagy. Although autophagosomes are short lived compared to other organelles such as mitochondria, plastids, and peroxisomes, many autolysosomes accumulate in tobacco BY-2 cells cultured under sucrose starvation conditions in the presence of a cysteine protease inhibitor. We here describe our methodology for isolating autolysosomes from BY-2 cells by conventional cell fractionation using a Percoll gradient. The autolysosome fraction separates clearly from fractions containing mitochondria and peroxisomes. It contains acid phosphatase, vacuolar H+-ATPase, and protease activity. Electron micrographs show that the fraction contains partially degraded cytoplasm seen in autolysosomes before isolation although an autolysosome structure is only partially preserved.


Assuntos
Fracionamento Celular/métodos , Centrifugação com Gradiente de Concentração/métodos , Lisossomos/química , Células Vegetais/química , Proteínas de Plantas/química , Fosfatase Ácida/química , Fosfatase Ácida/isolamento & purificação , Autofagia , Biomarcadores/química , Técnicas de Cultura de Células , Fracionamento Celular/instrumentação , Centrifugação com Gradiente de Concentração/instrumentação , Meios de Cultura/química , Inibidores de Cisteína Proteinase/farmacologia , Leucina/análogos & derivados , Leucina/farmacologia , Lisossomos/efeitos dos fármacos , Lisossomos/ultraestrutura , Mitocôndrias/química , Mitocôndrias/efeitos dos fármacos , Mitocôndrias/ultraestrutura , Peptídeo Hidrolases/química , Peptídeo Hidrolases/isolamento & purificação , Peroxissomos/química , Peroxissomos/efeitos dos fármacos , Peroxissomos/ultraestrutura , Células Vegetais/efeitos dos fármacos , Células Vegetais/ultraestrutura , Proteínas de Plantas/isolamento & purificação , Proteólise , Sacarose/química , Nicotiana/química , Nicotiana/citologia , ATPases Vacuolares Próton-Translocadoras/química , ATPases Vacuolares Próton-Translocadoras/isolamento & purificação , Vacúolos/química , Vacúolos/efeitos dos fármacos , Vacúolos/ultraestrutura
16.
Biophys Chem ; 216: 37-43, 2016 09.
Artigo em Inglês | MEDLINE | ID: mdl-27393931

RESUMO

The 39-residue fragment of human prostatic acidic phosphatase (PAP) is found in high concentrations in semen and easily form fibrils. Previous work has shown that fibrillization is accelerated with a deletion of the first 8, mostly charged residues and it was hypothesized that fibrillization depended on the dynamics of these peptides. To test this hypothesis we have measured the intramolecular diffusion of the full length and 8-residue deletion peptides at two different pHs and found a correlation with fibrillization lag time. These results can be explained by a simple kinetic model of the early stages of aggregation in which oligomerization is controlled by the rate of peptide reconfiguration.


Assuntos
Fosfatase Ácida/química , Fragmentos de Peptídeos/química , Amiloide/química , Difusão , Humanos , Concentração de Íons de Hidrogênio , Cinética , Agregados Proteicos
17.
J Sci Food Agric ; 96(4): 1223-30, 2016 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-25872004

RESUMO

BACKGROUND: Recycling of phosphorus (P) from organic residues (ORs) is important to develop environmentally friendly agriculture. The use of this P source depends on phosphatase enzymes, which can be affected by a chain of parameters during maturation of ORs. In this study the phosphatase activity levels throughout vermicomposting of filter cake (FC) and cattle manure (CM) were correlated with different physical and chemical parameters in an effort to increase the knowledge about recycling of P from ORs. RESULTS: FC presented higher total nitrogen content (TNC), total organic carbon (TOC), humic acid (HA) content, water-soluble P (WSP), phosphatase activities and nanopore volume than CM during vermicomposting. Decreases in TOC of CM resulted from carbohydrate mineralization, which was not observed for FC. CM showed increased hydrophobic index during vermicomposting while FC showed a slight decrease. CONCLUSION: Phosphatase activities correlated positively with TOC, pH and WSP and negatively with HA content for both vermicomposts. Nanopore volume was negatively correlated with phosphatase activities for FC but not for CM. No correlations between hydrophobicity and phosphatase activities were found for FC. Increased hydrophobicity throughout vermicomposting of CM could be partially associated with decreases in phosphatase levels.


Assuntos
Fosfatase Ácida/química , Criação de Animais Domésticos , Substâncias Húmicas , Esterco , Animais , Bovinos , Conservação dos Recursos Naturais , Indústria de Laticínios , Feminino
18.
Molecules ; 20(12): 22781-98, 2015 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-26703540

RESUMO

This work investigated the spectrum-effect relationships between high performance liquid chromatography (HPLC) fingerprints and the anti-benign prostatic hyperplasia activities of aqueous extracts from Saxifraga stolonifera. The fingerprints of S. stolonifera from various sources were established by HPLC and evaluated by similarity analysis (SA), hierarchical clustering analysis (HCA) and principal component analysis (PCA). Nine samples were obtained from these 24 batches of different origins, according to the results of SA, HCA and the common chromatographic peaks area. A testosterone-induced mouse model of benign prostatic hyperplasia (BPH) was used to establish the anti-benign prostatic hyperplasia activities of these nine S. stolonifera samples. The model was evaluated by analyzing prostatic index (PI), serum acid phosphatase (ACP) activity, concentrations of serum dihydrotestosterone (DHT), prostatic acid phosphatase (PACP) and type II 5α-reductase (SRD5A2). The spectrum-effect relationships between HPLC fingerprints and anti-benign prostatic hyperplasia activities were investigated using Grey Correlation Analysis (GRA) and partial least squares regression (PLSR). The results showed that a close correlation existed between the fingerprints and anti-benign prostatic hyperplasia activities, and peak 14 (chlorogenic acid), peak 17 (quercetin 5-O-ß-d-glucopyranoside) and peak 18 (quercetin 3-O-ß-l-rhamno-pyranoside) in the HPLC fingerprints might be the main active components against anti-benign prostatic hyperplasia. This work provides a general model for the study of spectrum-effect relationships of S. stolonifera by combing HPLC fingerprints with a testosterone-induced mouse model of BPH, which can be employed to discover the principle components of anti-benign prostatic hyperplasia bioactivity.


Assuntos
Extratos Vegetais/química , Extratos Vegetais/farmacologia , Hiperplasia Prostática/tratamento farmacológico , Saxifragaceae/química , 3-Oxo-5-alfa-Esteroide 4-Desidrogenase/química , Fosfatase Ácida/química , Animais , Cromatografia Líquida de Alta Pressão/métodos , Di-Hidrotestosterona/química , Análise dos Mínimos Quadrados , Masculino , Camundongos , Análise de Componente Principal/métodos , Testosterona
19.
Arch Biochem Biophys ; 585: 32-38, 2015 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-26380880

RESUMO

Histidine acid phosphatases (HAPs) utilize a nucleophilic histidine residue to catalyze the transfer of a phosphoryl group from phosphomonoesters to water. HAPs function as protein phosphatases and pain suppressors in mammals, are essential for Giardia lamblia excystation, and contribute to virulence of the category A pathogen Francisella tularensis. Herein we report the first crystal structure and steady-state kinetics measurements of the HAP from Legionella pneumophila (LpHAP), also known as Legionella major acid phosphatase. The structure of LpHAP complexed with the inhibitor l(+)-tartrate was determined at 2.0 Å resolution. Kinetics assays show that l(+)-tartrate is a 50-fold more potent inhibitor of LpHAP than of other HAPs. Electrostatic potential calculations provide insight into the basis for the enhanced tartrate potency: the tartrate pocket of LpHAP is more positive than other HAPs because of the absence of an ion pair partner for the second Arg of the conserved RHGXRXP HAP signature sequence. The structure also reveals that LpHAP has an atypically expansive active site entrance and lacks the nucleotide substrate base clamp found in other HAPs. These features imply that nucleoside monophosphates may not be preferred substrates. Kinetics measurements confirm that AMP is a relatively inefficient in vitro substrate of LpHAP.


Assuntos
Fosfatase Ácida/química , Monofosfato de Adenosina/química , Proteínas de Bactérias/química , Histidina/química , Legionella pneumophila/química , Tartaratos/química , Fosfatase Ácida/antagonistas & inibidores , Fosfatase Ácida/genética , Motivos de Aminoácidos , Proteínas de Bactérias/antagonistas & inibidores , Proteínas de Bactérias/genética , Domínio Catalítico , Cristalografia por Raios X , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Cinética , Legionella pneumophila/enzimologia , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Eletricidade Estática , Especificidade por Substrato
20.
PLoS One ; 10(6): e0130144, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26091289

RESUMO

In this work, we have investigated the involvement of DmCatD, a cathepsin D-like peptidase, and acid phosphatase in the process of follicular atresia of Dipetalogaster maxima, a hematophagous insect vector of Chagas' disease. For the studies, fat bodies, ovaries and hemolymph were sampled from anautogenous females at representative days of the reproductive cycle: pre-vitellogenesis, vitellogenesis as well as early and late atresia. Real time PCR (qPCR) and western blot assays showed that DmCatD was expressed in fat bodies and ovaries at all reproductive stages, being the expression of its active form significantly higher at the atretic stages. In hemolymph samples, only the immunoreactive band compatible with pro-DmCatD was observed by western blot. Acid phosphatase activity in ovarian tissues significantly increased during follicular atresia in comparison to pre-vitellogenesis and vitellogenesis. A further enzyme characterization with inhibitors showed that the high levels of acid phosphatase activity in atretic ovaries corresponded mainly to a tyrosine phosphatase. Immunofluorescence assays demonstrated that DmCatD and tyrosine phosphatase were associated with yolk bodies in vitellogenic follicles, while in atretic stages they displayed a different cellular distribution. DmCatD and tyrosine phosphatase partially co-localized with vitellin. Moreover, their interaction was supported by FRET analysis. In vitro assays using homogenates of atretic ovaries as the enzyme source and enzyme inhibitors demonstrated that DmCatD, together with a tyrosine phosphatase, were necessary to promote the degradation of vitellin. Taken together, the results strongly suggested that both acid hydrolases play a central role in early vitellin proteolysis during the process of follicular atresia.


Assuntos
Fosfatase Ácida/fisiologia , Catepsina D/fisiologia , Atresia Folicular , Hemípteros/enzimologia , Proteínas de Insetos/fisiologia , Insetos Vetores/enzimologia , Fosfatase Ácida/química , Animais , Catepsina D/química , Doença de Chagas/parasitologia , Corpo Adiposo/enzimologia , Feminino , Expressão Gênica , Hemípteros/parasitologia , Hemolinfa/enzimologia , Humanos , Concentração de Íons de Hidrogênio , Proteínas de Insetos/química , Insetos Vetores/parasitologia , Células MCF-7 , Masculino , Especificidade de Órgãos , Ovário/enzimologia , Proteólise , Trypanosoma cruzi/fisiologia , Vitelinas/química , Vitelinas/metabolismo
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