Complete mitogenome of Ganges river dolphin, Platanista gangetica gangetica and its phylogenetic relationship with other cetaceans.

The Ganges river dolphin, Platanista gangetica gangetica is one of the endangered cetaceans. Due to increasing anthropogenic activities, it has faced a significant reduction in distribution range since the late 1800s and has even gone extinct from most of the early localities. The investigation of complete mitogenome holds significant relevance for identifying evolutionary relationships and monitoring the endangered species. Herein, we report and characterize for the first time the 16,319 bp complete mitochondrial genome of P. g. gangetica. It comprises 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA genes, and one control region (CR). The genome composition was A + T biased (59.6%) and exhibited a positive AT-skew (0.104) and negative GC-skew (- 0.384). All the genes were encoded on the heavy strand, except eight tRNAs and the ND6 gene. In the CR, an 18 bp tandem repeat sequence was observed. Our Bayesian Inference (BI) and Maximum Likelihood (ML) based phylogenetic analysis indicated that studied river dolphins were polyphyletic and the placement of Platanista was to be more basal than other river dolphins (Lipotes, Inia and Pontoporia). The pairwise genetic distance of Platanista with other cetaceans was varied, with an overall close affinity with whales. The model-based BI and ML phylogenetic analysis indicated that Platanista clustering with Ziphiidae with high to moderate supportive values (PP/BP = 98/68). The results of this study provide insights important for the conservation genetics and further evolutionary studies of the freshwater river dolphins.

The abundance of false killer whale, Pseudorca crassidens (Cetartiodactyla: Delphinidae) in coastal waters of Golfo Dulce and Osa Peninsula, Costa Rica / Abundancia de la falsa orca, Pseudorca crassidens (Cetartiodactyla: Delphinidae) en las aguas costeras del Golfo Dulce y la Península de Osa, Costa Rica

Introduction: False killer whale (Pseudorca crassidens) is a tropical and subtropical social species that live in groups with individuals of mixed ages and sex classes. False killer whales have been documented since the late 1990s in Southwestern Costa Rica. Objective: To estimate the abundance of false killer whales in Osa Peninsula waters. Methods: Cetacean surveys off the Osa Peninsula Waters (OPW), Costa Rica, yielded opportunistic encounters with false killer whales in Drake Bay and Caño Island (2001-2019) and observations during formal surveys in Golfo Dulce (2005-2015). Photo-identification data was analyzed using capture-mark-recapture models in the study area, through an open population (POPAN) framework, considering the effect of time on the parameters apparent survival and capture probability, producing an abundance estimate for a superpopulation in the entire study area. Results: False killer whale abundance in OPW is characterized by a small population size of no more than 100 individuals, complemented by a very low probability of encounter and a contrasting high apparent survival. Conclusions: This population estimate should be taken as conservative, however, the small population size of less than 100 individuals should be considered vulnerable, in contrast to the increasing anthropogenic impacts in the coastal seascape. We argue the potential occurrence of population units along the coastal seascape of the Pacific littoral and oceanic island-associated units at Isla del Coco.

Introducción: La falsa orca es una especie gregaria tropical y subtropical, que vive en grupos con individuos de diferentes clases de edad y sexo. La falsa orca ha sido documentada en el sur-oeste de Costa Rica desde finales de los 90s. Objetivo: Evaluar el uso de hábitat de la especie en términos de abundancia. Métodos: Observaciones en campo para cetáceos en aguas de la Península de Osa (APO), incluyen encuentros oportunísimos en Bahía de Drake y la Isla del Caño (2001-2019), así como observaciones directas de Pseudorca crassidens, durante muestreos formales en Golfo Dulce (2005-2015). Se analizaron datos sobre foto-identificación utilizando modelos de marcaje captura y recaptura, considerando un enfoque para población abierta (POPAN), el cual considera el efecto del tiempo en los parámetros demográficos: supervivencia aparente (ф) y probabilidad de captura (P), produciendo un estimado de abundancia que comprende toda la superpoblación en el área de estudio. Resultados: La abundancia de la falsa orca en APO se caracteriza por un tamaño poblacional pequeño, de menos de 100 individuos, que se complementa por una muy baja probabilidad de captura, en contraste con una supervivencia aparente alta. Conclusión: Este estimado debe tratarse como conservativo, no obstante, el pequeño número poblacional, de menos de 100 individuos debe considerarse como vulnerable, en contraste con el incremento del impacto antropogénico del paisaje marino costero. Se discute la posible presencia de unidades poblacionales en el paisaje costero del litoral Pacífico y de unidades oceánicas asociadas a la Isla del Coco.

Limited trophic partitioning among sympatric delphinids off a tropical oceanic atoll.

Understanding trophic relationships among marine predators in remote environments is challenging, but it is critical to understand community structure and dynamics. In this study, we used stable isotope analysis of skin biopsies to compare the isotopic, and thus, trophic niches of three sympatric delphinids in the waters surrounding Palmyra Atoll, in the Central Tropical Pacific: the melon-headed whale (Peponocephala electra), Gray's spinner dolphin (Stenella longirostris longirostris), and the common bottlenose dolphin (Tursiops truncatus). δ15N values suggested that T. truncatus occupied a significantly higher trophic position than the other two species. δ13C values did not significantly differ between the three delphinds, potentially indicating no spatial partitioning in depth or distance from shore in foraging among species. The dietary niche area-determined by isotopic variance among individuals-of T. truncatus was also over 30% smaller than those of the other species taken at the same place, indicating higher population specialization or lower interindividual variation. For P. electra only, there was some support for intraspecific variation in foraging ecology across years, highlighting the need for temporal information in studying dietary niche. Cumulatively, isotopic evidence revealed surprisingly little evidence for trophic niche partitioning in the delphinid community of Palmyra Atoll compared to other studies. However, resource partitioning may happen via other behavioral mechanisms, or prey abundance or availability may be adequate to allow these three species to coexist without any such partitioning. It is also possible that isotopic signatures are inadequate to detect trophic partitioning in this environment, possibly because isotopes of prey are highly variable or insufficiently resolved to allow for differentiation.

Diversidad de cetáceos en el paisaje marino costeros de Golfo Dulce, Península de Osa, Costa Rica / Diversity of cetaceans in coastal seascape Golfo Dulce, Osa Peninsula, Costa Rica

Resumen Golfo Dulce es un estuario en forma de fiordo, localizado en el Pacífico Sur de Costa Rica. Este ecosistema marino-costero contiene una importante biodiversidad marina que incluye cetáceos. Este estudio describe la estructura de la comunidad de cetáceos en Golfo Dulce, sustentado en la diversidad de hábitats. Datos sobre avistamientos colectados en muestreos periódicos sistemáticos, han resultado en 943 registros (2005-2014≈3 490h≈64 533km) de siete especies de la familia Delphinidae, una Balaenopteridae y una especie de la familia Kogiidae. Se observa un gradiente en la diversidad de cetáceos desde la cuenca interna de Golfo Dulce hasta la zona de transición- oceánica en la entrada al Golfo. La dominancia se establece por la forma costera del delfín nariz de botella y el delfín manchado en la cuenca interna, mientras que T. truncatus junto con ballenas jorobadas migrantes ejercen la dominancia en el área del Umbral. El área transicional oceánica sostiene la mayor diversidad, dominada por especies de delfínidos de naturaleza piscívora, incluyendo la forma oceánica del delfín nariz de botella y la subespecie "Centroamericana" del delfín tornillo. Nosotros proponemos la hipótesis de una forma potencial particular del delfín manchado pantropical para Golfo Dulce, en contraste con S. attenuatta graffmani en aguas abiertas costeras del Pacífico Costarricense. El patrón de la estructura comunitaria de cetáceos se establece por la dinámica en uso de área por las especies presentes, lo cual debería ser considerado para el diseño de estrategias de manejo y conservación.

Abstract Golfo Dulce is a fiord-lilke embayment located in the southern Pacific of Costa Rica, this coastal-marine ecosystem harbors an important wealth in marine biodiversity, including cetaceans. In this study we describe the cetacean community of Golfo Dulce, in relation to the diversity of habitats constituting the seascape. Sighting data collected in periodic systematic surveys has yielded 943 records (2005-2014≈3 490h≈64 533km), of 12 species of cetaceans. A gradient of cetacean diversity is observed from the inner basin to the transitional-oceanic area at the entrance of the Gulf, with coastal bottlenose dolphin and spotted dolphin dominating the inner basin, and bottlenose dolphins and migratory humpback whales the sill area. Transitional oceanic habitat holds the greatest species diversity dominated by oceanic species, particularly piscivorous delphinids, including the off-shore form of bottlenose dolphins and the "Central American" spinner dolphin. We hypothesize the potential occurrence of a morphotype of pantropical spotted dolphins within Golfo Dulce, in contrast with S. attenuatta graffmani outside in open Pacific coastal waters. The pattern of cetacean community structure is established by the dynamic of area use by the species, which should be considered for the establishment of management and conservation strategies. Rev. Biol. Trop. 63 (2): 395-406. Epub 2015 June 01.

Occurrence and distribution patterns of several marine vertebrates in Golfo Dulce, Costa Rica / Patrones de presencia y distribución de vertebrados marinos en el Golfo Dulce

Abstract Within the months of January-February 2010 and July-August 2011, 55 daily sighting surveys were conducted in Golfo Dulce, a tropical fiord-like embayment in the South Pacific region of Costa Rica. The research objective was to collect baseline data on several marine vertebrates that enter or reside in the Gulf and determine spatial distribution during the study periods. Sighting surveys mainly focused on whales, dolphins, sea turtles and sea snakes. A total of 458 recorded sightings, representing at least 30 marine species, were acquired during 423.7 observation hours across all areas of the embayment. These data, along with information garnered from 82 interviews with local fishermen and tour boat guides, confirmed a wide array of marine species utilizing the inlet for the purposes of foraging, mating, resting and socializing. GIS analyses allowed comparisons of spatial distribution and revealed high-density areas for marine fauna within Golfo Dulce. Rev. Biol. Trop. 63 (Suppl. 1): 261-272. Epub 2015 April 01.

Resumen Durante los meses de enero-febrero del 2010 y julio-agosto del 2011, se realizaron 55 muestreos de avistamientos diarios en el Golfo Dulce, una ensenada considerada un fiordo tropical en la región del Pacífico Sur de Costa Rica. El objetivo de la investigación fue recolectar datos de línea base en relación con las especies marinas que entran o residen en el Golfo, incluida la distribución espacial durante los períodos de estudio. El enfoque principal del estudio fue en especies de ballenas, delfines, tortugas marinas y serpientes marinas; sin embargo, se registraron observaciones de otras especies. Se documentaron un total de 458 avistamientos, que representan por lo menos 30 especies marinas, durante 423.7h de observación en todas las áreas del Golfo. Estos datos, junto con la información obtenida a partir de 82 entrevistas a pescadores locales y guías de barcos turísticos, sugieren que una gran variedad de vertebrados marinos utilizan el Golfo con el propósito de buscar alimento, aparearse, descansar y socializar. El análisis de los datos mediante SIG permite la comparación de la distribución espacial, la cual reveló áreas de alta densidad de fauna marina en el Golfo Dulce.

Delphinid systematics and biogeography with a focus on the current genus Lagenorhynchus: multiple pathways for antitropical and trans-oceanic radiation.

The six species currently classified within the genus Lagenorhynchus exhibit a pattern of antitropical distribution common among marine taxa. In spite of their morphological similarities they are now considered an artificial grouping, and include both recent and the oldest representatives of the Delphinidae radiation. They are, therefore, a good model for studying questions about the evolutionary processes that have driven dolphin speciation, dispersion and distribution. Here we used two different approaches. First we constructed a multigenic phylogeny with a minimum amount of missing data (based on 9 genes, 11,030bp, using the 6 species of the genus and their closest relatives) to infer their relationships. Second, we built a supermatrix phylogeny (based on 33 species and 27 genes) to test the effect of taxon sampling on the phylogeny of the genus, to provide inference on biogeographic history, and provide inference on the main events shaping the dispersion and radiation of delphinids. Our analyses suggested an early evolutionary history of marine dolphins in the North Atlantic Ocean and revealed multiple pathways of migration and radiation, probably guided by paleoceanographic changes during the Miocene and Pliocene. L. acutus and L. albirostris likely shared a common ancestor that arose in the North Atlantic around the Middle Miocene, predating the radiation of subfamilies Delphininae, Globicephalinae and Lissodelphininae.

Species tree of a recent radiation: the subfamily Delphininae (Cetacea, Mammalia).

Lineages undergoing rapid radiations provide exceptional opportunities for studying speciation and adaptation, but also represent a challenge for molecular systematics because retention of ancestral polymorphisms and the occurrence of hybridization can obscure relationships among lineages. Dolphins in the subfamily Delphininae are one such case. Non-monophyly, rapid speciation events, and discordance between morphological and molecular characters have made the inference of phylogenetic relationships within this subfamily very difficult. Here we approach this problem by applying multiple methods intended to estimate species trees using a multi-gene dataset for the Delphininae (Sousa, Sotalia, Stenella, Tursiops, Delphinus and Lagenodelphis). Incongruent gene trees obtained indicate that incomplete lineage sorting and possibly hybridization are confounding the inference of species history in this group. Nonetheless, using coalescent-based methods, we have been able to extract an underlying species-tree signal from divergent histories of independent genes. This is the first time a molecular study provides support for such relationships. This study further illustrates how methods of species-tree inference can be very sensitive both to the characteristics of the dataset and the evolutionary processes affecting the evolution of the group under study.

Toward the resolution of an explosive radiation--a multilocus phylogeny of oceanic dolphins (Delphinidae).

Oceanic dolphins (Delphinidae) are the product of a rapid radiation that yielded ∼36 extant species of small to medium-sized cetaceans that first emerged in the Late Miocene. Although they are a charismatic group of organisms that have become poster children for marine conservation, many phylogenetic relationships within Delphinidae remain elusive due to the slow molecular evolution of the group and the difficulty of resolving short branches from successive cladogenic events. Here I combine existing and newly generated sequences from four mitochondrial (mt) genes and 20 nuclear (nu) genes to reconstruct a well-supported phylogenetic hypothesis for Delphinidae. This study compares maximum-likelihood and Bayesian inference methods of several data sets including mtDNA, combined nuDNA, gene trees of individual nuDNA loci, and concatenated mtDNA+nuDNA. In addition, I contrast these standard phylogenetic analyses with the species tree reconstruction method of Bayesian concordance analysis (BCA). Despite finding discordance between mtDNA and individual nuDNA loci, the concatenated matrix recovers a completely resolved and robustly supported phylogeny that is also broadly congruent with BCA trees. This study strongly supports groupings such as Delphininae, Lissodelphininae, Globicephalinae, Sotalia+Delphininae, Steno+Orcaella+Globicephalinae, and Leucopleurus acutus, Lagenorhynchus albirostris, and Orcinus orca as basal delphinid taxa.

Cetáceos de las aguas costeras del Pacífico norte y sur de Costa Rica

Inshore cetaceans from the North and South Pacific coast of Costa Rica. Twenty nine cetacean species occur in Costa Rican waters but extensive research has been conducted only for three species. The latter shows there is a lack of general and local information about these mammals, even when the country, has shown a remarkable growth in whale watching activities. The increasing use of marine resources in coastal areas has also developed the need to determine the occurrence of cetaceans in areas showing high tourist presence, in order to propose sound conservation measures. In this study, environmental variables were determined and subsequently related to the presence of the species recorded, out of 166 sightings, between 2005 and 2006. The species with highest proportion of sightings were Stenella attenuata (68%), followed by Megaptera novaeangliae (13%) and Tursiops truncatus (10%). The presence of spotted dolphins is related to changes in salinity and water transparency, while that of the humpback whale was related to wave height (Beaufort scale) and water temperature. The presence of seven species of cetaceans was confirmed in two coastal areas of the Pacific coast of Costa Rica, from which three are present throughout the year. Environmental variables were found related to the presence of at least two species. Rev. Biol. Trop. 59 (1): 283-290. Epub 2011 March 01.

De las 29 especies de cetáceos presentes en Costa Rica, se han realizado investigaciones exhaustivas solamente para tres especies. Lo anterior evidencia la poca información general existente sobre cetáceos, a pesar de que Costa Rica posee un notable crecimiento de actividades de avistamiento. Debido al uso que se está generando en las zonas costeras, cada vez se hace más necesario determinar la ocurrencia de cetáceos en zonas de alta actividad turística, con el fin de proponer medidas de conservación. En el presente estudio, se determinaron variables ambientales que estaban relacionadas con la presencia de especies registradas, a partir de 166 avistamientos entre el 2005 y 2006. Las especies con mayor proporción de avistamientos fueron Stenella attenuata (68%), seguida por Megaptera novaeangliae (13%) y Tursiops truncatus (10%). La presencia del delfín manchado se relaciona con cambios de salinidad y trasparencia del agua, mientras que la de la ballena jorobada estuvo relacionada con el oleaje y la temperatura superficial del agua. Se confirma la presencia de 7 especies de cetáceos en dos zonas costeras del Pacífico de Costa Rica, de las cuales tres están presentes a lo largo del año. Se encontraron variables ambientales relacionadas con la presencia de al menos dos especies.

Feeding associations between Guiana dolphins, Sotalia guianensis (Van Bénèden, 1864) and seabirds in the Lagamar estuary, Brazil / Associações de alimentação entre o boto-cinza (Sotalia guianensis) (Van Bénèden, 1864) e aves marinhas no estuário do Lagamar, Brasil

The main objective of the present study was to describe the characteristics regarding interactions between Guiana dolphins, Sotalia guianensis and seabirds in feeding associations in two distinct areas of the Lagamar estuary, Brazil. Boat-based surveys directed towards photo-identification studies of S. guianensis were conducted in the Cananéia Estuary (CE) (25° 01' S and 47° 55' W) from July 2004 to March 2008, as well as in the Paranaguá Estuarine Complex (PEC) (25° 24' S and 48° 24' W) from April 2006 to February 2008. On all occasions when seabirds were observed engaging in multi-species feeding associations with S. guianensis, data on species involved and their numbers were gathered. From 435 observed groups of S. guianensis in the CE, 38 (8.7 percent) involved interactions with seabirds. In the PEC, from the 286 observed groups, 32 (11.2 percent) involved the mentioned interactions. The following seabirds were observed in feeding associations with S. guianensis: Fregata magnificens, Sula leucogaster, Phalacrocorax brasilianus, and Sterna sp. In the CE, S. leucogaster was more commonly observed in feeding associations with Guiana dolphins (χ2 = 22.84; d.f. = 3, p < 0.05), while in the PEC no differences were reported when comparing seabird species (χ2 = 5.78; d.f.=3, p = 0.1223). In the CE, feeding associations were significantly more frequent in inner waters (subset A0; χ2 = 9.52; d.f. = 2, p < 0.05), and in winter (χ2 = 12.46; d.f. = 1, p < 0.05). Within these events, 44.7 percent of the association groups were composed by more than one seabird species. Seasonality in feeding associations was also observed in the PEC (χ2 = 4.76; d.f. = 1, p < 0.05), with same patterns observed in the CE. Interactions were more frequent in inner waters of the Laranjeiras bay, PEC (χ2 = 11.65; d.f. = 2, p < 0.05). Within these events, 74.2 percent of the association groups were composed by more than one seabird species. ...

O objetivo principal do presente estudo foi de descrever as características a respeito das associações de alimentação entre o boto-cinza, Sotalia guianensis, e aves marinhas em duas áreas distintas do estuário do Lagamar, Brasil. Investigações efetuadas a partir de embarcação e direcionadas a estudos de foto-identificação de S. guianensis foram conduzidas no Estuário de Cananéia (EC) (25° 01' S e 47° 55' O) entre julho de 2004 e março de 2008, bem como no Complexo Estuarino de Paranaguá (CEP) (25° 24' S e 48° 24' O) entre abril de 2006 e fevereiro de 2008. Em todas as ocasiões em que aves marinhas foram observadas em associações de alimentação multiespecífica com S. guianensis, dados sobre as espécies envolvidas e seus números foram obtidos. Dos 435 grupos de S. guianensis observados no EC, 38 (8,7 por cento) envolveram interações com aves marinhas. No CEP, dos 286 grupos observados, 32 (11,2 por cento) envolveram as interações mencionadas. As seguintes aves marinhas foram observadas em associações de alimentação com S. guianensis: Fregata magnificens, Sula leucogaster, Phalacrocorax brasilianus, Sterna sp. No EC, S. leucogaster foi significativamente mais observada em associação de alimentação com o boto-cinza (χ2 = 22,84; g.l. = 3 p < 0,05), enquanto no CEP não foram observadas diferenças quando comparadas as aves marinhas (χ2 = 5,78; g.l. = 3, p = 0,1223). No EC, associações de alimentação foram significativamente mais freqüentes em águas internas (χ2 = 9,52; g.l. = 2, p < 0,05) e no inverno (χ2 = 12,46; g.l. = 1, p < 0,05). Dentre estes eventos, 44,7 por cento dos grupos de associação foram compostos por mais de uma espécie. Sazonalidade nas associações de alimentação também foi observada no CEP (χ2 = 4,76; g.l. = 1, p < 0,05), com os mesmos padrões observados para o EC. As interações foram mais freqüentes na baía das Laranjeiras, CEP (χ2 = 11,65; d.f. = 2, p < 0,05). Dentre estes eventos, 74,2 por cento ...

Group size and composition of Guiana dolphins (Sotalia guianensis) (Van Bénèden, 1864) in the Paranaguá Estuarine Complex, Brazil / Tamanho e composição de grupos do boto-cinza (Sotalia guianensis) (Van Bénèden, 1864) no Complexo Estuarino de Paranaguá, Brasil

The aim of the present study was to describe the characteristics of Guiana dolphins (S. guianensis) group size and composition in the Paranaguá Estuarine Complex (25° 15' -25° 36' S and 48° 02'-48° 45' W), Paraná State, as well as to verify the existence of relationships between a given environmental variable (water depth, salinity, transparency and temperature) and group size. An area of around 124 km² was surveyed by boat from April 2006 to February 2008 in the following subsets of the estuary: Canal do Superagui (~28 km²), Pinheiros bay (~34 km²), part of Laranjeiras bay, which included the Guaraqueçaba sub-estuary (~38 km²), and part of the Mixture Section of the Paranaguá Estuarine Complex (~24 km²). In 45 survey days, a total of 147 hours were spent observing 286 groups of S. guianensis. Groups varied from two individuals to aggregations of up to 90 individuals (mean ± SD: 11.5 ± 14.4 individuals). Solitary individuals were seen only on five occasions (1.7 percent of all observations). Groups with calves (n = 247) represented 86.4 percent overall and were more common in all sub-areas when compared to groups without calves. Groups without calves were found in all sub-areas and were usually smaller and composed of up to 12 individuals. A usual group composition of 70 percent of adults and 30 percent of calves was observed considering all sub-areas and seasons. No correlations were found between group size and water temperature (Spearman's rank test, r = 0.0059, p = 0.9338), transparency (Spearman's rank test, r = 0.0597, p = 0.9333), depth (Spearman's rank test, r = 0.1421, p = 0.4698), and salinity (Spearman's rank test, r = -0.1938, p = 0.0665). While Guiana dolphin groups were seen in the entire surveyed area, group size varied significantly among the three main surveyed sub-areas (Kruskal Wallis, H2,196 = 29.85, p = 0.0000). Groups were larger in Laranjeiras bay and smaller in Canal do Superagui. The physical environment, risk ...

O objetivo do presente estudo foi descrever as características do tamanho e da composição de grupos do boto-cinza (S. guianensis) no Complexo Estuarino de Paranaguá (25° 15'-25° 36' S and 48° 02'-48° 45' O), Estado do Paraná, assim como de verificar a possível existência de relações entre uma dada variável ambiental (profundidade, salinidade, transparência e temperatura da água) e o tamanho de grupo. Uma área de aproximadamente 124 km² foi investigada com uso de barco a motor entre abril de 2006 e fevereiro de 2008 nas seguintes sub-áreas do estuário: Canal do Superagui (~28 km²), baía dos Pinheiros (~34 km²), parte da baía das Laranjeiras que incluiu o sub-estuário de Guaraqueçaba (~38 km²), e parte da Seção de Mistura do Complexo Estuarino de Paranaguá (~24 km²). Em 45 dias de investigação, um total de 147 horas foi empregado na observação de 286 grupos de S. guianensis. Numericamente os grupos variaram entre dois e 90 indivíduos (média ± DP: 11,5 ± 14,4 indivíduos). Indivíduos solitários foram observados em apenas cinco ocasiões (1,7 por cento de todas as observações). Grupos com filhotes (n = 247) representaram 86,4 por cento de todos os observados e foram mais comuns em todas as sub-áreas quando comparados com grupos sem filhotes. Grupos sem filhotes foram geralmente compostos por até 12 indivíduos e encontrados em todas as sub-áreas. Uma comum composição de grupo de cerca de 70 por cento de adultos e 30 por cento de filhotes foi observada considerando todas as sub-áreas e estações do ano. Não foram apontados correlações entre o tamanho de grupo e a temperatura (Teste de Rank de Spearman, r = 0,0059; p = 0,9338), a transparência (Teste de Rank de Spearman, r = 0,0597; p = 0,9333), a profundidade (Teste de Rank de Spearman, r = 0,1421; p = 0,4698), e a salinidade da água (Teste de Rank de Spearman, r = -0,1938; p = 0,0665). Enquanto grupos de botos-cinza foram observados ao largo de todo o estuário, seus tamanhos variaram significativamente ...

Non-metric characters in two species of Sotalia (Gray, 1866) (Cetacea, Delphinidae) / Caracteres não métricos nas duas espécies de Sotalia (Gray, 1866)

Analyses of non-metric characters of the skull and cervical vertebrae were performed among samples of dolphins of the genus Sotalia from the north, northeast and south Brazilian coast (S. guianensis) and also samples from the Amazon River Basin (S. fluviatilis) as part of an osteological descriptive study. The results demonstrated that there was a higher percentage of occurrence of fenestrae in the occipital region (66 percent) and cervical ribs in the cervical vertebrae (87 percent) in the riverine species. The vomer in wide shape was more frequent in the riverine species (57 percent), followed by the intermediate (32 percent) and narrow shape (11 percent), that was found to be more frequent in the marine species (66 to 76 percent). In relation to the lacerate anterior foramen, it was observed that an open/elongated shape is more common in the riverine species (88 percent). Most samples in the marine species present this foramen divided by a spike shaped projection (72 to 98 percent). The ventrally visible location of the hypoglossal foramen was more often observed externally displaced in S. guianensis (88 to 98 percent), while in S. fluviatilis, most samples (87 percent) presented this foramen internally displaced to the jugular notch, and not visible in ventral view. The fluvial species seems to present neoteny (or maintenance of juvenile characters in adults) in relation to the position of the pterygoids and in development of lacerate anterior foramen.

Este é um trabalho osteológico descritivo entre exemplares do gênero Sotalia da costa Norte, Nordeste e Sul do Brasil e exemplares fluviais da bacia amazônica, analisando caracteres não métricos no crânio e nas vértebras cervicais. A frequência de ocorrência de fenestras na região occipital (66 por cento) e de costelas cervicais (87 por cento) foi maior na espécie fluvial (S. fluviatilis). Na espécie fluvial, a forma do vômer largo foi mais frequente (57 por cento), seguida da forma intermediária (32 por cento) e estreita (11 por cento). A forma do vômer estreito foi mais frequente na espécie marinha (S. guianensis) (66 a 76 por cento). Em relação ao forâmen lacerado anterior, foi observado que a forma aberta/alongada é mais comum na espécie fluvial (88 por cento). Na espécie marinha, a maioria dos exemplares apresenta este forâmen dividido por uma projeção em forma de espinho (72 a 98 por cento). A localização do forâmen hipoglossal visível ventralmente foi mais observada em S. guianensis (88 a 98 por cento), enquanto que em S. fluviatilis, a maioria dos exemplares (87 por cento) apresentou este forâmen deslocado internamente à reentrância jugular, não podendo ser observado em vista ventral. A espécie fluvial parece apresentar neotenia (ou manutenção de caracteres juvenis no adulto) em relação ao posicionamento dos pterigoides e ao desenvolvimento do forâmen lacerado interior.

A worldwide perspective on the population structure and genetic diversity of bottlenose dolphins (Tursiops truncatus) in New Zealand.

Bottlenose dolphins (Tursiops truncatus) occupy a wide range of coastal and pelagic habitats throughout tropical and temperate waters worldwide. In some regions, "inshore" and "offshore" forms or ecotypes differ genetically and morphologically, despite no obvious boundaries to interchange. Around New Zealand, bottlenose dolphins inhabit 3 coastal regions: Northland, Marlborough Sounds, and Fiordland. Previous demographic studies showed no interchange of individuals among these populations. Here, we describe the genetic structure and diversity of these populations using skin samples collected with a remote biopsy dart. Analysis of the molecular variance from mitochondrial DNA (mtDNA) control region sequences (n = 193) showed considerable differentiation among populations (F(ST) = 0.17, Phi(ST) = 0.21, P < 0.001) suggesting little or no female gene flow or interchange. All 3 populations showed higher mtDNA diversity than expected given their small population sizes and isolation. To explain the source of this variation, 22 control region haplotypes from New Zealand were compared with 108 haplotypes worldwide representing 586 individuals from 19 populations and including both inshore and offshore ecotypes as described in the Western North Atlantic. All haplotypes found in the Pacific, regardless of population habitat use (i.e., coastal or pelagic), are more divergent from populations described as inshore ecotype in the Western North Atlantic than from populations described as offshore ecotype. Analysis of gene flow indicated long-distance dispersal among coastal and pelagic populations worldwide (except for those haplotypes described as inshore ecotype in the Western North Atlantic), suggesting that these populations are interconnected on an evolutionary timescale. This finding suggests that habitat specialization has occurred independently in different ocean basins, perhaps with Tursiops aduncus filling the ecological niche of the inshore ecotype in some coastal regions of the Indian and Western Pacific Oceans.

Movements of the bottlenose Dolphin (Tursiops truncatus) in the Rio de Janeiro State, Southeastern Brazil / Deslocamentos do golfinho-nariz-de-garrafa (Tursiops truncatus) no estado do Rio de Janeiro, sudeste do Brasil

Aiming to verify the movements of the bottlenose dolphin (Tursiops truncatus) at Rio de Janeiro State coast, southeastern Brazil, we performed a photoidentification comparison between the catalogued individuals of the Cagarras Archipelago (23º 02' S and 43º 12' W) in 2004 and 2006 (n = 26) and the images obtained (n = 179) during the Southeastern Cetaceans Expedition, conducted during months of June and November of 2005. Eight individuals (three females and five dolphins of unknown gender) identified in the Cagarras Archipelago were resighted in the Grande Island (23º 21'S and 44º 15' W), about 100 km southwestwards from Cagarras Archipelago. The observed movements include distances commonly recorded for the species elsewhere and are probably related to search for prey.

Com o objetivo de verificar os deslocamentos do golfinho-nariz-de-garrafa (Tursiops truncatus) no estado do Rio de Janeiro, sudeste do Brasil, foi feita uma análise entre os indivíduos catalogados no arquipélago das Cagarras em 2004 e 2006 (n = 26) e as fotografias (n = 179) obtidas durante a Expedição Cetáceos do Sudeste, realizada em junho e novembro de 2005. Oito indivíduos (três fêmeas e cinco golfinhos de sexo indeterminado) identificados no arquipélago das Cagarras (23º 02' S e 43º 12' W) foram reavistados na Ilha Grande (23º 21'S e 44º 15' W), aproximadamente 100 km a sudoeste do arquipélago. Os deslocamentos observados estão dentro das distâncias comumente registradas para a espécie e, provavelmente, são relacionados com a busca de recursos alimentares.

Notas sobre a distribuição, tamanho de grupo e comportamento do golfinho Tursiops truncatus (Cetacea: Delphinidae) na Ilha de Santa Catarina, sul do Brasil / Notes on the distribution, group size and behavior of the bottlenose dolphin,Tursiops truncatus(Cetacea: Delphinidae) in the coast of the Island of Santa Catarina, southern Brazil

A ecologia do golfinho-nariz-de-garrafa (Tursiops truncatus) é pouco documentada no Brasil. O objetivo deste trabalho é fornecer dados sobre a distribuição, tamanho de grupo e comportamento de T. truncatus a partir de avistagens oportunistas realizadas nas adjacências da Ilha de Santa Catarina, sul do Brasil. Em cada observação de grupos da espécie foram registrados: localidade, data e hora, tamanho de grupo e comportamento. Foram observados 71 grupos entre 1989 e 2005, em todos os meses do ano. A espécie foi observada em toda região costeira da Ilha de Santa Catarina, utilizando uma grande variedade de hábitats. O tamanho de grupo variou entre 1 e 200 indivíduos, com uma média de aproximadamente 8 indivíduos (moda = 2). Interações com pelo menos três espécies de aves marinhas também foram observadas, além de outros comportamentos. Os dados obtidos sugerem que a espécie é comum ao longo da costa da Ilha de Santa Catarina, possui uma grande plasticidade no uso de hábitats, além de um conjunto variado de comportamentos.

The ecology of the bottlenose dolphin (Tursiops truncatus) is scarcely documented in Brazil. The objective of this article is to present information about the distribution, group size and behavior of T. truncatus collected oportunistically around the Island of Santa Catarina. Locality, date and time, group size and behavior were registered after each opportunistic sighting. Seventy-one groups were observed between 1989 and 2005, in all months of the year. The species was sighted along all the coast of the island, using a great variety of habitats including protected bays and exposed beaches. Group size varied from 1 to 200 individuals, with a mean group size of approximately 8 individuals (mode = 2). Interactions with three species of sea birds were also documented. Data presented here suggest that the species is common around the Island of Santa Catarina, has a great plasticity in habitat use, and a varied behavior repertoire.

First confirmed record of Feresa attenuata (Delphinidae) for the Northern Brazilian Coast / Primeiro registro confirmado de Feresa attenuata (Delphinidae) para o litoral norte do Brasil

In Brazil only one confirmed stranding is known from an emaciated specimen collected along the southeastern coast. The aim of this work is to report a recent record of a pygmy killer whale from the coast of Maranhão State, northern Brazil. On 22 October 2005, through regular surveys conducted by Projeto Cetáceos do Maranhão team, a beach-worn skull of a pygmy killer whale was found on the Mangue Seco beach, at Caju Island, Maranhão State. The specimen was identified through peculiar features, such as a short beak, 11 teeth per row in the maxile and the distance between the anterorbital notch and the end of the toothrow. This stranding suggests that pygmy killer whales may use oceanic waters close to Maranhão continental shelf. This is the second confirmed stranding of F. attenuata for the Brazilian Coast and the first along the northern coast. The present record increases our poor knowledge on the cetacean fauna of the northern Brazilian coast.

No Brasil somente um exemplar de Feresa attenuata foi coletado ao longo da costa sudeste. O objetivo deste trabalho é registrar o recente encalhe da orca-pigméia para a costa do Maranhão, litoral norte do Brasil. Em 22 de outubro de 2005, através de monitoramentos regulares conduzidos pelo Projeto Cetáceos do Maranhão, um crânio do exemplar de F. attenuata foi encontrado na praia do Mangue Seco, na Ilha do Caju, Estado do Maranhão, Brasil. O espécime foi identificado através de características peculiares, como o rostro curto, 11 pares de dentes na maxila e pela distancia entre o anterorbital e o término dos alvéolos dentares. Este encalhe sugere que a orca-pigméia pode usar águas oceânicas próximas à plataforma continental do Maranhão. Este é o segundo registro de encalhe confirmado para F. attenuata para a costa brasileira e o primeiro para a costa norte. O presente estudo contribui com o pouco conhecimento sobre os cetáceos na costa norte do Brasil.

Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution.

BACKGROUND: Dolphins of the genus Lagenorhynchus are anti-tropically distributed in temperate to cool waters. Phylogenetic analyses of cytochrome b sequences have suggested that the genus is polyphyletic; however, many relationships were poorly resolved. In this study, we present a combined-analysis phylogenetic hypothesis for Lagenorhynchus and members of the subfamily Lissodelphininae, which is derived from two nuclear and two mitochondrial data sets and the addition of 34 individuals representing 9 species. In addition, we characterize with parsimony and Bayesian analyses the phylogenetic utility and interaction of characters with statistical measures, including the utility of highly consistent (non-homoplasious) characters as a conservative measure of phylogenetic robustness. We also explore the effects of removing sources of character conflict on phylogenetic resolution. RESULTS: Overall, our study provides strong support for the monophyly of the subfamily Lissodelphininae and the polyphyly of the genus Lagenorhynchus. In addition, the simultaneous parsimony analysis resolved and/or improved resolution for 12 nodes including: (1) L. albirostris, L. acutus; (2) L. obscurus and L. obliquidens; and (3) L. cruciger and L. australis. In addition, the Bayesian analysis supported the monophyly of the Cephalorhynchus, and resolved ambiguities regarding the relationship of L. australis/L. cruciger to other members of the genus Lagenorhynchus. The frequency of highly consistent characters varied among data partitions, but the rate of evolution was consistent within data partitions. Although the control region was the greatest source of character conflict, removal of this data partition impeded phylogenetic resolution. CONCLUSION: The simultaneous analysis approach produced a more robust phylogenetic hypothesis for Lagenorhynchus than previous studies, thus supporting a phylogenetic approach employing multiple data partitions that vary in overall rate of evolution. Even in cases where there was apparent conflict among characters, our data suggest a synergistic interaction in the simultaneous analysis, and speak against a priori exclusion of data because of potential conflicts, primarily because phylogenetic results can be less robust. For example, the removal of the control region, the putative source of character conflict, produced spurious results with inconsistencies among and within topologies from parsimony and Bayesian analyses.

Patterns of cetacean sighting distribution in the Pacific Exclusive Economic Zone of Costa Rica based on data collected from 1979-2001

Nineteen species of cetaceans (families Balaenopteridae, Kogiidae, Physeteridae, Ziphiidae and Delphinidae) occur in the Costa Rican Pacific Exclusive Economic Zone (EEZ). Based on data recorded from the EEZ by the Southwest Fisheries Service Center, Cascadia Research Collective, and CIMAR between 1979- 2001, we mapped the distribution of 18 cetacean species. Our results suggest that the majority of the cetacean species use primarily oceanic waters, particularly those species within the families Balaenopteridae, Kogiidae, Physeteridae and Ziphiidae. Members of the family Delphinidae showed a wide variety of distribution patterns: seven species are widespread throughout the EEZ, four appear to be exclusively pelagic, and two are primarily coastal. Overall, three cetacean species appear to have populations concentrated in coastal waters: Stenella attenuata graffmani, Tursiops truncatus, and Megaptera novaeangliae. These three may be more susceptible to human activities due to the overlap of their ranges with fishery areas (tuna and artisanal fisheries), and an uncontrolled increase of touristic whale watching activities in several parts of their range. The distribution maps represent the first comprehensive representation of cetacean species that inhabit Costa Rican Pacific waters. They provide essential base-line information that may be used to initiate conservation and management efforts of the habitats where these animals reproduce and forage

Diecinueve especies de cetáceos distribuídos en cinco familias (Balaenopteridae, Kogiidae, Physeteridae, Ziphiidae and Delphinidae) habitan en la Zona Económica Exclusiva del Pacífico de Costa Rica (ZEEP). Con base a datos tomados en esta zona por el Southwest Fisheries Service Center, Cascadia Research Collective y CIMAR entre 1979 y 2001 construímos mapas de distribución de avistamientos para 18 especies. Nuestros resultados sugieren que la mayoría de las especies de cetáceos habitan en aguas oceánicas, particularmente miembros de las familias Balaenopteridae, Kogiidae, Physeteridae y Ziphiidae. Miembros de la familia Delphinidae mostraron una variedad de patrones de distribución, siete mostraron una distribución amplia en el ZEEP, cuatro parecen ser exclusivamente oceánicas y dos principalmente costeras. Adicionalmente, tres especies de cetáceos tienen poblaciones concentradas en la costa: Stenella attenuata graffmani, Tursiops truncatus y Megaptera novaeangliae. Estas tres especies son por lo tanto más suceptibles debido a que su hábitat traslapa considerablemnte con áreas importantes para la pesca artesanal y atunera, y áreas de observación de ballenas (las cuales a incrementado considerablemente en los últimos años). Los mapas de distribución de avistamientos de cetáceos presentados en este trabajo son los primeros en su tipo para Costa Rica. Estos aportan información esencial y básica para iniciativas de conservación y manejo de estos animals y los habitats donde estos se reproducen y alimentan

Genetic evidence on the demography of speciation in allopatric dolphin species.

Under a neutral model, the stochastic lineage sorting that leads to gene monophyly proceeds slowly in large populations. Therefore, in many recent species with large population size, the genome will have mixed support for monophyly unless historical bottlenecks have accelerated coalescence. We use genealogical patterns in mitochondrial DNA and in introns of four nuclear loci to test for historical bottlenecks during the speciation and divergence of two temperate Lagenorhynchus dolphin species isolated by tropical Pacific waters (an antitropical distribution). Despite distinct morphologies, foraging behaviors, and mitochondrial DNAs, these dolphin species are polyphyletic at all four nuclear loci. The abundance of shared polymorphisms between these sister taxa is most consistent with the maintenance of large effective population sizes (5.09 x 10(4) to 10.9 x 10(4)) during 0.74-1.05 million years of divergence. A variety of population size histories are possible, however. We used gene tree coalescent probabilities to explore the rejection region for historical bottlenecks of different intensity given best estimates of effective population size under a strict isolation model of divergence. In L. obliquidens the data are incompatible with a colonization propagule of an effective size of 10 or fewer individuals. Although the ability to reject less extreme historical bottlenecks will require data from additional loci, the intermixed genealogical patterns observed between these dolphin sister species are highly probable only under an extended history of large population size. If similar demographic histories are inferred for other marine antitropical taxa, a parsimonious model for the Pleistocene origin of these distributions would not involve rare breaches of a constant dispersal barrier by small colonization propagules. Instead, a history of large population size in L. obliquidens and L. obscurus contributes to growing biological and environmental evidence that the equatorial barrier became permeable during glacial/interglacial cycles, leading to vicariant isolation of antitropical populations.