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1.
Mol Biol (Mosk) ; 58(1): 154-156, 2024.
Artigo em Russo | MEDLINE | ID: mdl-38943586

RESUMO

Murine gammaherpesvirus 68 (MHV68) establishes latency mainly in B cells and causes lymphomas reminiscent of human gammaherpesvirus diseases in laboratory mice. To study the molecular mechanism of virus infection and how the viral determinants control cell and eventually cause tumorigenesis, readily available latently infected cell lines are essential. For in vitro MHV68 latency studies, only two cell culture systems have been available. Gammaherpesviruses are known to infect developing B cells and macrophages, therefore we aimed to expand the MHV68 latently infected cell line repertoire. Here, several latently infected immature B cell and macrophage-like cell line clones were generated. Hygromycin-resistant recombinant MHV68 was isolated from a laboratory-made latent cell line, HE2.1, and propagated to develop stable cell lines that carry the viral genome under hygromycin selection. Subclones of these cells lines were analyzed for viral miRNA expression by TaqMan qPCR and assessed for expression of a lytic viral transcript M3. The cell lines maintain the viral genome as an episome shown by the digestion-circularization PCR assay. Latently infected cell lines generated here do not express viral miRNAs higher than the parental cell line. However, these cell lines may provide an alternative tool to study latency mechanisms and miRNA target identification studies.


Assuntos
Genoma Viral , Higromicina B , Macrófagos , MicroRNAs , RNA Viral , Rhadinovirus , Latência Viral , Animais , Camundongos , MicroRNAs/genética , MicroRNAs/metabolismo , Latência Viral/genética , Higromicina B/farmacologia , Higromicina B/análogos & derivados , Macrófagos/virologia , Macrófagos/metabolismo , Rhadinovirus/genética , RNA Viral/genética , RNA Viral/metabolismo , Linhagem Celular , Regulação Viral da Expressão Gênica , Células Precursoras de Linfócitos B/virologia , Células Precursoras de Linfócitos B/metabolismo , Infecções por Herpesviridae/genética , Infecções por Herpesviridae/virologia , Cinamatos
2.
PLoS Negl Trop Dis ; 18(4): e0012092, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38578808

RESUMO

Madurella mycetomatis is the main cause of mycetoma, a chronic granulomatous infection for which currently no adequate therapy is available. To improve therapy, more knowledge on a molecular level is required to understand how M. mycetomatis is able to cause this disease. However, the genetic toolbox for M. mycetomatis is limited. To date, no method is available to genetically modify M. mycetomatis. In this paper, a protoplast-mediated transformation protocol was successfully developed for this fungal species, using hygromycin as a selection marker. Furthermore, using this method, a cytoplasmic-GFP-expressing M. mycetomatis strain was created. The reported methodology will be invaluable to explore the pathogenicity of M. mycetomatis and to develop reporter strains which can be useful in drug discovery as well as in genetic studies.


Assuntos
Higromicina B , Madurella , Protoplastos , Transformação Genética , Higromicina B/farmacologia , Higromicina B/análogos & derivados , Madurella/genética , Madurella/efeitos dos fármacos , Farmacorresistência Fúngica/genética , Micetoma/microbiologia , Micetoma/tratamento farmacológico , Cinamatos/farmacologia
3.
FEBS J ; 291(10): 2191-2208, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38431777

RESUMO

The essential yeast protein GPN-loop GTPase 1 (Npa3) plays a critical role in RNA polymerase II (RNAPII) assembly and subsequent nuclear import. We previously identified a synthetic lethal interaction between a mutant lacking the carboxy-terminal 106-amino acid tail of Npa3 (npa3ΔC) and a bud27Δ mutant. As the prefoldin-like Bud27 protein participates in ribosome biogenesis and translation, we hypothesized that Npa3 may also regulate these biological processes. We investigated this proposal by using Saccharomyces cerevisiae strains episomally expressing either wild-type Npa3 or hypomorphic mutants (Npa3ΔC, Npa3K16R, and Npa3G70A). The Npa3ΔC mutant fully supports RNAPII nuclear localization and activity. However, the Npa3K16R and Npa3G70A mutants only partially mediate RNAPII nuclear targeting and exhibit a higher reduction in Npa3 function. Cell proliferation in these strains displayed an increased sensitivity to protein synthesis inhibitors hygromycin B and geneticin/G418 (npa3G70A > npa3K16R > npa3ΔC > NPA3 cells) but not to transcriptional elongation inhibitors 6-azauracil, mycophenolic acid or 1,10-phenanthroline. In all three mutant strains, the increase in sensitivity to both aminoglycoside antibiotics was totally rescued by expressing NPA3. Protein synthesis, visualized by quantifying puromycin incorporation into nascent-polypeptide chains, was markedly more sensitive to hygromycin B inhibition in npa3ΔC, npa3K16R, and npa3G70A than NPA3 cells. Notably, high-copy expression of the TIF11 gene, that encodes the eukaryotic translation initiation factor 1A (eIF1A) protein, completely suppressed both phenotypes (of reduced basal cell growth and increased sensitivity to hygromycin B) in npa3ΔC cells but not npa3K16R or npa3G70A cells. We conclude that Npa3 plays a critical RNAPII-independent and previously unrecognized role in translation initiation.


Assuntos
Higromicina B , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae , Higromicina B/farmacologia , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/crescimento & desenvolvimento , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , RNA Polimerase II/genética , RNA Polimerase II/metabolismo , Inibidores da Síntese de Proteínas/farmacologia , GTP Fosfo-Hidrolases/genética , GTP Fosfo-Hidrolases/metabolismo , Núcleo Celular/metabolismo , Núcleo Celular/genética , Biossíntese de Proteínas/efeitos dos fármacos
4.
Cell ; 184(21): 5405-5418.e16, 2021 10 14.
Artigo em Inglês | MEDLINE | ID: mdl-34619078

RESUMO

Lyme disease is on the rise. Caused by a spirochete Borreliella burgdorferi, it affects an estimated 500,000 people in the United States alone. The antibiotics currently used to treat Lyme disease are broad spectrum, damage the microbiome, and select for resistance in non-target bacteria. We therefore sought to identify a compound acting selectively against B. burgdorferi. A screen of soil micro-organisms revealed a compound highly selective against spirochetes, including B. burgdorferi. Unexpectedly, this compound was determined to be hygromycin A, a known antimicrobial produced by Streptomyces hygroscopicus. Hygromycin A targets the ribosomes and is taken up by B. burgdorferi, explaining its selectivity. Hygromycin A cleared the B. burgdorferi infection in mice, including animals that ingested the compound in a bait, and was less disruptive to the fecal microbiome than clinically relevant antibiotics. This selective antibiotic holds the promise of providing a better therapeutic for Lyme disease and eradicating it in the environment.


Assuntos
Antibacterianos/uso terapêutico , Doença de Lyme/tratamento farmacológico , Animais , Borrelia burgdorferi/efeitos dos fármacos , Calibragem , Cinamatos/química , Cinamatos/farmacologia , Cinamatos/uso terapêutico , Avaliação Pré-Clínica de Medicamentos , Fezes/microbiologia , Feminino , Células HEK293 , Células Hep G2 , Humanos , Higromicina B/análogos & derivados , Higromicina B/química , Higromicina B/farmacologia , Higromicina B/uso terapêutico , Doença de Lyme/microbiologia , Camundongos , Testes de Sensibilidade Microbiana , Microbiota/efeitos dos fármacos
5.
mBio ; 11(3)2020 05 19.
Artigo em Inglês | MEDLINE | ID: mdl-32430474

RESUMO

Antibiotics produced by bacteria play important roles in microbial interactions and competition Antibiosis can induce resistance mechanisms in target organisms, and at sublethal doses, antibiotics have been shown to globally alter gene expression patterns. Here, we show that hygromycin A from Streptomyces sp. strain 2AW. induces Chromobacterium violaceum ATCC 31532 to produce the purple antibiotic violacein. Sublethal doses of other antibiotics that similarly target the polypeptide elongation step of translation likewise induced violacein production, unlike antibiotics with different targets. C. violaceum biofilm formation and virulence against Drosophila melanogaster were also induced by translation-inhibiting antibiotics, and we identified an antibiotic-induced response (air) two-component regulatory system that is required for these responses. Genetic analyses indicated a connection between the Air system, quorum-dependent signaling, and the negative regulator VioS, leading us to propose a model for induction of violacein production. This work suggests a novel mechanism of interspecies interaction in which a bacterium produces an antibiotic in response to inhibition by another bacterium and supports the role of antibiotics as signal molecules.IMPORTANCE Secondary metabolites play important roles in microbial communities, but their natural functions are often unknown and may be more complex than appreciated. While compounds with antibiotic activity are often assumed to underlie microbial competition, they may alternatively act as signal molecules. In either scenario, microorganisms might evolve responses to sublethal concentrations of these metabolites, either to protect themselves from inhibition or to change certain behaviors in response to the local abundance of another species. Here, we report that violacein production by C. violaceum ATCC 31532 is induced in response to hygromycin A from Streptomyces sp. 2AW, and we show that this response is dependent on inhibition of translational polypeptide elongation and a previously uncharacterized two-component regulatory system. The breadth of the transcriptional response beyond violacein induction suggests a surprisingly complex metabolite-mediated microbe-microbe interaction and supports the hypothesis that antibiotics evolved as signal molecules. These novel insights will inform predictive models of soil community dynamics and the unintended effects of clinical antibiotic administration.


Assuntos
Antibacterianos/farmacologia , Antibiose/efeitos dos fármacos , Chromobacterium/efeitos dos fármacos , Cinamatos/farmacologia , Higromicina B/análogos & derivados , Indóis/metabolismo , Biossíntese de Proteínas/efeitos dos fármacos , Animais , Biofilmes/efeitos dos fármacos , Biofilmes/crescimento & desenvolvimento , Chromobacterium/genética , Chromobacterium/patogenicidade , Drosophila melanogaster , Feminino , Regulação Bacteriana da Expressão Gênica , Higromicina B/farmacologia , Percepção de Quorum/efeitos dos fármacos , Streptomyces/metabolismo , Virulência
6.
J Microbiol Methods ; 170: 105838, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-31926179

RESUMO

Chromoblastomycosis (CBM) is a chronic cutaneous or subcutaneous mycosis that is prevalent worldwide. Though CBM tends not to be fatal, it is difficult to treat and complications can include chronic, marked lesions, lymphatic damage, and neoplastic transformation. Fonsecaea monophora, as a new species segregated from Fonsecaea pedrosoi, is the predominant causative pathogen of CBM in southern China. However, research about F. monophora has been limited, which may be due to a lack of an effective genetic manipulation system for F. monophora. In this study, we successfully established a random insertional mutagenesis system by Agrobacterium tumefaciens-mediated transformation (ATMT) in F. monophora for the first time. In order to improve the efficiency of ATMT, various co-culture conditions were optimized, including: acetosyringone (AS) concentrations, co-culture duration, ratio of bacteria to conidia, and the A. tumefaciens strains. In addition, thermal asymmetric interlaced polymerase chain reaction (TAIL-PCR) was performed to identify the transferred DNA (T-DNA) flanking sequences of the F. monophora transformants. The valuable transformants obtained in this study will be used for research in the future.


Assuntos
Agrobacterium tumefaciens/genética , DNA Bacteriano/genética , Farmacorresistência Fúngica/genética , Fonsecaea/genética , Transformação Genética/genética , Antibacterianos/farmacologia , Cromoblastomicose/microbiologia , Fonsecaea/efeitos dos fármacos , Higromicina B/farmacologia , Mutagênese Insercional/genética , Reação em Cadeia da Polimerase , Microbiologia do Solo
7.
Artigo em Inglês | MEDLINE | ID: mdl-28861399

RESUMO

Earlier we demonstrated that the adenylyl cyclase (AC) encoded by the MSMEG_4279 gene plays a key role in the resuscitation and growth of dormant Mycobacterium smegmatis and that overexpression of this gene leads to an increase in intracellular cAMP concentration and prevents the transition of M. smegmatis from active growth to dormancy in an extended stationary phase accompanied by medium acidification. We surmised that the homologous Rv2212 gene of M. tuberculosis (Mtb), the main cAMP producer, plays similar physiological roles by supporting, under these conditions, the active state and reactivation of dormant bacteria. To test this hypothesis, we established Mtb strain overexpressing Rv2212 and compared its in vitro and in vivo growth characteristics with a control strain. In vitro, the AC-overexpressing pMindRv2212 strain demonstrated faster growth in a liquid medium, prolonged capacity to form CFUs and a significant delay or even prevention of transition toward dormancy. AC-overexpressing cells exhibited easier recovery from dormancy. In vivo, AC-overexpressing bacteria demonstrated significantly higher growth rates (virulence) in the lungs and spleens of infected mice compared to the control strain, and, unlike the latter, killed mice in the TB-resistant strain before month 8 of infection. Even in the absence of selecting hygromycin B, all pMindRv2212 CFUs retained the Rv2212 insert during in vivo growth, strongly suggesting that AC overexpression is beneficial for bacteria. Taken together, our results indicate that cAMP supports the maintenance of Mtb cells vitality under unfavorable conditions in vitro and their virulence in vivo.


Assuntos
Adenilil Ciclases/genética , Adenilil Ciclases/metabolismo , Regulação Bacteriana da Expressão Gênica , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/metabolismo , Tuberculose/microbiologia , Animais , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Contagem de Colônia Microbiana , AMP Cíclico/metabolismo , Modelos Animais de Doenças , Feminino , Higromicina B/farmacologia , Pulmão/microbiologia , Pulmão/patologia , Camundongos , Camundongos Endogâmicos C57BL , Mycobacterium tuberculosis/crescimento & desenvolvimento , Mycobacterium tuberculosis/patogenicidade , Baço/microbiologia , Baço/fisiologia , Tuberculose/patologia , Virulência
8.
J Microbiol Biotechnol ; 27(2): 357-364, 2017 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-27780958

RESUMO

In this study, we aimed to generate a series of versatile tagging plasmids that can be used in diverse molecular biological studies of the fungal pathogen Cryptococcus neoformans. We constructed 12 plasmids that can be used to tag a protein of interest with a GFP, mCherry, 4×FLAG, or 6×HA, along with nourseothricin-, neomycin-, or hygromycin-resistant selection markers. Using this tagging plasmid set, we explored the adenylyl cyclase complex (ACC), consisting of adenylyl cyclase (Cac1) and its associated protein Aca1, in the cAMP-signaling pathway, which is critical for the pathogenicity of C. neoformans. We found that Cac1-mCherry and Aca1-GFP were mainly colocalized as punctate forms in the cell membrane and nonnuclear cellular organelles. We also demonstrated that Cac1 and Aca1 interacted in vivo by coimmunoprecipitation, using Cac1-6×HA and Aca1-4×FLAG tagging strains. Bimolecular fluorescence complementation further confirmed the in vivo interaction of Cac1 and Aca1 in live cells. Finally, protein pull-down experiments using aca1Δ::ACA1-GFP and aca1Δ::ACA1- GFP cac1Δ strains and comparative mass spectrometry analysis identified Cac1 and a number of other novel ACC-interacting proteins. Thus, this versatile tagging plasmid system will facilitate diverse mechanistic studies in C. neoformans and further our understanding of its biology.


Assuntos
Adenilil Ciclases/genética , Adenilil Ciclases/metabolismo , Cryptococcus neoformans/genética , Plasmídeos , Sequência de Aminoácidos , Cinamatos/farmacologia , Cryptococcus neoformans/fisiologia , AMP Cíclico/química , AMP Cíclico/genética , AMP Cíclico/fisiologia , Genes Fúngicos , Engenharia Genética/métodos , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Espectrometria de Massas , Transdução de Sinais
9.
PLoS One ; 10(8): e0136231, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26295942

RESUMO

Tuberculosis (TB) is the world's deadliest curable disease, responsible for an estimated 1.5 million deaths annually. A considerable challenge in controlling this disease is the prolonged multidrug chemotherapy (6 to 9 months) required to overcome drug-tolerant mycobacteria that persist in human tissues, although the same drugs can sterilize genetically identical mycobacteria growing in axenic culture within days. An essential component of TB infection involves intracellular Mycobacterium tuberculosis bacteria that multiply within macrophages and are significantly more tolerant to antibiotics compared to extracellular mycobacteria. To investigate this aspect of human TB, we created a physical cell culture system that mimics confinement of replicating mycobacteria, such as in a macrophage during infection. Using this system, we uncovered an epigenetic drug-tolerance phenotype that appears when mycobacteria are cultured in space-confined bioreactors and disappears in larger volume growth contexts. Efflux mechanisms that are induced in space-confined growth environments contribute to this drug-tolerance phenotype. Therefore, macrophage-induced drug tolerance by mycobacteria may be an effect of confined growth among other macrophage-specific mechanisms.


Assuntos
Antituberculosos/farmacologia , Tolerância a Medicamentos/genética , Dispositivos Lab-On-A-Chip , Modelos Biológicos , Mycobacterium smegmatis/efeitos dos fármacos , Antituberculosos/metabolismo , Carga Bacteriana , Transporte Biológico , Cinamatos/metabolismo , Cinamatos/farmacologia , Difusão , Dimetilpolisiloxanos , Epigênese Genética , Humanos , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Higromicina B/farmacologia , Isoniazida/metabolismo , Isoniazida/farmacologia , Macrófagos/microbiologia , Microdiálise , Mycobacterium smegmatis/genética , Mycobacterium smegmatis/crescimento & desenvolvimento , Mycobacterium tuberculosis/efeitos dos fármacos , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/crescimento & desenvolvimento , Ofloxacino/metabolismo , Ofloxacino/farmacologia , Fenótipo , Rifampina/metabolismo , Rifampina/farmacologia
10.
PLoS One ; 10(3): e0121316, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25811655

RESUMO

Androgen receptor plays multiple physiological and pathological roles in human organism. In the current paper, we describe construction and characterization of a novel stably transfected human reporter cell line AIZ-AR for assessment of transcriptional activity of human androgen receptor. Cell line AIZ-AR is derived from human prostate carcinoma epithelial cell line 22Rv1 that was transfected with reporter plasmid containing 3 copies of androgen response regions (ARRs) followed by a single copy of androgen response element (ARE) from the promoter region of human prostate specific antigen (PSA) gene. AIZ-AR cells remained fully functional for more than 60 days and over 25 passages in the culture and even after cryopreservation. Time-course analyses showed that AIZ-AR cells allow detection of AR ligands as soon as after 8 hours of the treatment. We performed dose-response analyses with 23 steroids in 96-well plate format. We observed activation of AR by androgens, but not by estrogens and mineralocorticoids. Some glucocorticoids and progesterone also induced luciferase, but their potencies were 2-3 orders of magnitude weaker as compared to androgens. Taken together, we have developed a rapid, sensitive, selective, high-throughput and reproducible tool for detection of human AR ligands, with potential use in pharmacological and environmental applications.


Assuntos
Genes Reporter , Receptores Androgênicos/genética , Transcrição Gênica , Transfecção , Antagonistas de Receptores de Andrógenos/farmacologia , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Cinamatos/farmacologia , Células Clonais , Criopreservação , Di-Hidrotestosterona/farmacologia , Relação Dose-Resposta a Droga , Humanos , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Luciferases/metabolismo , Receptores Androgênicos/metabolismo , Esteroides/farmacologia , Fatores de Tempo , Transcrição Gênica/efeitos dos fármacos
11.
Cell ; 160(4): 771-784, 2015 Feb 12.
Artigo em Inglês | MEDLINE | ID: mdl-25679766

RESUMO

Aneuploid genomes, characterized by unbalanced chromosome stoichiometry (karyotype), are associated with cancer malignancy and drug resistance of pathogenic fungi. The phenotypic diversity resulting from karyotypic diversity endows the cell population with superior adaptability. We show here, using a combination of experimental data and a general stochastic model, that the degree of phenotypic variation, thus evolvability, escalates with the degree of overall growth suppression. Such scaling likely explains the challenge of treating aneuploidy diseases with a single stress-inducing agent. Instead, we propose the design of an "evolutionary trap" (ET) targeting both karyotypic diversity and fitness. This strategy entails a selective condition "channeling" a karyotypically divergent population into one with a predominant and predictably drugable karyotypic feature. We provide a proof-of-principle case in budding yeast and demonstrate the potential efficacy of this strategy toward aneuploidy-based azole resistance in Candida albicans. By analyzing existing pharmacogenomics data, we propose the potential design of an ET against glioblastoma.


Assuntos
Aneuploidia , Candida albicans/efeitos dos fármacos , Candida albicans/genética , Glioblastoma/tratamento farmacológico , Glioblastoma/genética , Antifúngicos/farmacologia , Antineoplásicos Fitogênicos/farmacologia , Camptotecina/análogos & derivados , Camptotecina/farmacologia , Linhagem Celular Tumoral , Farmacorresistência Fúngica , Resistencia a Medicamentos Antineoplásicos , Receptores ErbB/antagonistas & inibidores , Fluconazol/farmacologia , Humanos , Higromicina B/farmacologia , Irinotecano , Saccharomyces cerevisiae/metabolismo
12.
World J Gastroenterol ; 20(36): 13119-26, 2014 Sep 28.
Artigo em Inglês | MEDLINE | ID: mdl-25278705

RESUMO

AIM: To establish a method for the reversible immortalization of human hepatocytes, which may offer a good and safe source of hepatocytes for practical applications. METHODS: We successfully isolated primary human hepatocytes from surgically resected liver tissue taken from a patient with liver hemangiomas. The freshly isolated cells were then immortalized with retroviral vector SSR#69 expressing simian virus 40 large T antigen (SV40T) and hygromycin-resistance genes flanked by paired loxP recombination targets. RESULTS: The freshly isolated hepatocytes with high viability (85%) were successfully immortalized using retroviral gene transfer of SV40T. SV40T in the immortalized cells was then excised by Cre/loxP site-specific recombination. This cell population exhibited the characteristics of differentiated hepatocytes. CONCLUSION: We successfully established reversibly immortalized human hepatocytes, which will provide an unlimited supply of cells for practical applications.


Assuntos
Transformação Celular Viral , Hepatócitos/virologia , Recombinação Genética , Retroviridae/genética , Transdução Genética , Antibacterianos/farmacologia , Antígenos Transformantes de Poliomavirus/genética , Antígenos Transformantes de Poliomavirus/metabolismo , Diferenciação Celular , Linhagem Celular , Proliferação de Células , Separação Celular/métodos , Sobrevivência Celular , Cinamatos/farmacologia , Farmacorresistência Bacteriana/genética , Vetores Genéticos , Hepatócitos/metabolismo , Humanos , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Integrases/genética , Integrases/metabolismo , Retroviridae/metabolismo , Albumina Sérica/genética , Albumina Sérica/metabolismo , Albumina Sérica Humana , Fatores de Tempo
13.
Biotechniques ; 56(5): 263-8, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24806227

RESUMO

The recombinant adeno-associated virus (rAAV) has proven to be an efficient and attractive tool for targeted genome engineering. Here we present a novel method employing the Golden Gate cloning strategy for fast and efficient construction of rAAV-based gene knockout or single-nucleotide knockin vectors. Two vectors, pGolden-Neo and pGolden-Hyg, were generated as common assembling modules to confer antibiotic resistance to the targeting vector. To validate the method, we then generated two rAAV-based targeting vectors: pAAV-pTP53-KO and pAAV-hTau(P301L)-KI. Furthermore, we generated a pGolden-AAV plasmid that allows one-step generation of an rAAV-based targeting vector. Our new methodology for rAAV targeting vector assembly is efficient, accurate, time-saving, and cost-effective.


Assuntos
Clonagem Molecular/métodos , Dependovirus/genética , Marcação de Genes/métodos , Vetores Genéticos , Cinamatos/farmacologia , Resistência Microbiana a Medicamentos/genética , Técnicas de Inativação de Genes , Engenharia Genética/métodos , Humanos , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Neomicina/farmacologia , Reprodutibilidade dos Testes , Proteínas tau/genética
14.
Yeast ; 31(4): 115-25, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24822243

RESUMO

Pichia pastoris is a common host organism for heterologous protein expression and metabolic engineering. Zeocin-, G418-, nourseothricin- and blasticidin-resistance genes are the only dominant selectable markers currently available for selecting P. pastoris transformants. We describe here new P. pastoris expression vectors that confer a hygromycin resistance base on the Klebsiella pneumoniae hph gene. To demonstrate the application of the vectors for intracellular and secreted protein expression, green fluorescent protein (GFP) and human serum albumin (HSA) were cloned into the vectors and transformed into P. pastoris cells. The resulting strains expressed GFP and HSA constitutively or inducibly. The hygromycin resistance marker was also suitable for post-transformational vector amplication (PTVA) for obtaining strains with high plasmid copy numbers. A strain with multiple copies of the HSA expression cassette after PTVA had increased HSA expression compared with a strain with a single copy of the plasmid. To demonstrate compatibility of the new vectors with other vectors bearing antibiotic-resistance genes, P. pastoris was transformed with the Saccharomyces cerevisiae genes GSH1, GSH2 or SAM2 on plasmids containing genes for resistance to Zeocin, G418 or hygromycin. The resulting strain produced glutathione and S-adenosyl-L-methionine at levels approximately twice those of the parent strain. The new hygromycin-resistance vectors allow greater flexibility and potential applications in recombinant protein production and other research using P. pastoris.


Assuntos
Antifúngicos/farmacologia , Cinamatos/farmacologia , Expressão Gênica , Vetores Genéticos , Higromicina B/análogos & derivados , Biologia Molecular/métodos , Pichia/genética , Seleção Genética , Farmacorresistência Fúngica , Genes Reporter , Genética Microbiana/métodos , Higromicina B/farmacologia , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/genética , Transformação Genética
15.
Biotechniques ; 53(3): 141-52, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22963476

RESUMO

Gene targeting in a broad range of human somatic cell lines has been hampered by inefficient homologous recombination. To improve this technology and facilitate its widespread application, it is critical to first have a robust and efficient research system for measuring gene targeting efficiency. Here, using a fusion gene consisting of hygromycin B phosphotransferase and 3'-truncated enhanced GFP (HygR-5' EGFP) as a reporter gene, we created a molecular system monitoring the ratio of homologous to random integration (H/R ratio) of targeting vectors into the genome. Cell clones transduced with a reporter vector containing HygR-5' EGFP were efficiently established from two human somatic cell lines. Established HygR-5' EGFP reporter clones retained their capacity to monitor gene targeting efficiency for a longer duration than a conventional reporter system using an unfused 5' EGFP gene. With the HygR-5' EGFP reporter system, we reproduced previous findings of gene targeting frequency being up-regulated by the use of an adeno-associated viral (AAV) backbone, a promoter-trap system, or a longer homology arm in a targeting vector, suggesting that this system accurately monitors H/R ratio. Thus, our HygR-5' EGFP reporter system will assist in the development of an efficient AAV-based gene targeting technology.


Assuntos
Marcação de Genes/métodos , Genes Reporter/genética , Proteínas de Fluorescência Verde/genética , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Proteínas Recombinantes de Fusão/genética , Antibacterianos/farmacologia , Linhagem Celular , Cinamatos/farmacologia , Clonagem Molecular , Dependovirus/genética , Resistência a Medicamentos/genética , Citometria de Fluxo , Proteínas de Fluorescência Verde/metabolismo , Células HCT116 , Humanos , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Proteínas Recombinantes de Fusão/metabolismo , Transfecção/métodos
16.
Plant Mol Biol ; 79(1-2): 137-55, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22415161

RESUMO

Abiotic stress tolerance of plants is a very complex trait and involves multiple physiological and biochemical processes. Thus, the improvement of plant stress tolerance should involve pyramiding of multiple genes. In the present study, we report the construction and application of a bicistronic system, involving the internal ribosome entry site (IRES) sequence from the 5'UTR of the heat-shock protein of tobacco gene NtHSF-1, to the improvement of salt tolerance in transgenic tobacco plants. Two genes from wheat encoding two important vacuolar ion transporters, Na(+)/H(+) antiporter (TNHXS1) and H(+)-pyrophosphatase (TVP1), were linked via IRES to generate the bicistronic construct TNHXS1-IRES-TVP1. Molecular analysis of transgenic tobacco plants revealed the correct integration of the TNHXS1-IRES-TVP1construct into tobacco genome and the production of the full-length bicistronic mRNA from the 35S promoter. Ion transport analyses with tonoplast vesicles isolated from transgenic lines confirmed that single-transgenic lines TVP1cl19 and TNHXS1cl7 had greater H(+)-PPiase and Na(+)/H(+) antiport activity, respectively, than the WT. Interestingly, the co-expression of TVP1 and TNHXS1 increased both Na(+)/H(+) antiport and H(+)-PPiase activities and induced the H(+) pumping activity of the endogenous V-ATPase. Transgenic tobacco plants expressing TNHXS1-IRES-TVP1 showed a better performance than either of the single gene-transformed lines and the wild type plants when subjected to salt treatment. In addition, the TNHXS1-IRES-TVP1 transgenic plants accumulated less Na(+) and more K(+) in their leaf tissue than did the wild type and the single gene-transformed lines. These results demonstrate that IRES system, described herein, can co-ordinate the expression of two important abiotic stress-tolerance genes and that this expression system is a valuable tool for obtaining transgenic plants with improved salt tolerance.


Assuntos
Pirofosfatase Inorgânica/genética , Nicotiana/genética , Proteínas de Plantas/genética , Tolerância ao Sal/genética , Trocadores de Sódio-Hidrogênio/genética , Transcrição Gênica , Triticum/genética , Adaptação Fisiológica/efeitos dos fármacos , Catalase/metabolismo , Membrana Celular/efeitos dos fármacos , Membrana Celular/metabolismo , Clorofila/metabolismo , Cinamatos/farmacologia , Clonagem Molecular , DNA Complementar/genética , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Genes de Plantas/genética , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Folhas de Planta/efeitos dos fármacos , Folhas de Planta/metabolismo , Plantas Geneticamente Modificadas , Potássio/metabolismo , Saccharomyces cerevisiae/citologia , Saccharomyces cerevisiae/efeitos dos fármacos , Saccharomyces cerevisiae/metabolismo , Tolerância ao Sal/efeitos dos fármacos , Sódio/metabolismo , Cloreto de Sódio/farmacologia , Estresse Fisiológico/efeitos dos fármacos , Estresse Fisiológico/genética , Nicotiana/efeitos dos fármacos , Nicotiana/crescimento & desenvolvimento , Transcrição Gênica/efeitos dos fármacos , Triticum/efeitos dos fármacos , Triticum/enzimologia , Vacúolos/efeitos dos fármacos , Vacúolos/enzimologia
17.
Exp Parasitol ; 130(3): 200-4, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22306069

RESUMO

Ether glycerolipid biosynthesis in Leishmania major initiates with the acylation of dihydroxyacetonephosphate by the glycosomal dihydroxyacetonephosphate acyltransferase LmDAT. We previously reported that a null mutant of LmDAT is severely affected in logarithmic growth, survival during stationary phase, and in virulence in mice. In addition, it lacks all ether glycerolipids, produces altered forms of the ether-lipid based virulence factors lipophosphoglycan and increased levels of GPI-anchored protein gp63. Here, we describe the characterization of a compensatory mutant of a null strain of LmDAT, Δlmdat/Δlmdat(rev). Similarly to the null mutant, the Δlmdat/Δlmdat(rev) strain formed altered forms of lipophosphoglycan and increased levels of gp63, and was avirulent in mice infection. Further, dihydroxyacetonephosphate acyltransferase activity was absent in the revertant clone, indicating that a mutation in another acyltransferase gene did not confer dihydroxyacetonephosphate specificity. In contrast, the revertant grew normally but still exhibited poor survival during stationary phase. In addition, agarose gel analysis of its genomic DNA failed to detect any amplified DNA. Surprisingly, its sensitivity to aminoglycoside based antibiotics G418 and hygromycin was lower than that of the null mutant, wild type and complemented line.


Assuntos
Aciltransferases/genética , Antiprotozoários/farmacologia , Cinamatos/farmacologia , Gentamicinas/farmacologia , Higromicina B/análogos & derivados , Leishmania major/genética , Éteres Fosfolipídicos/metabolismo , Aciltransferases/metabolismo , Animais , Resistência a Medicamentos/genética , Amplificação de Genes , Glicoesfingolipídeos/metabolismo , Higromicina B/farmacologia , Leishmania major/efeitos dos fármacos , Leishmania major/crescimento & desenvolvimento , Leishmania major/metabolismo , Proteínas de Membrana/metabolismo , Metaloendopeptidases/metabolismo , Camundongos , Camundongos Endogâmicos BALB C , Mutação , Proteoglicanas/metabolismo , Proteínas de Protozoários/metabolismo , Virulência/genética
18.
Eukaryot Cell ; 10(9): 1241-50, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21724935

RESUMO

Potassium homeostasis is crucial for living cells. In the yeast Saccharomyces cerevisiae, the uptake of potassium is driven by the electrochemical gradient generated by the Pma1 H(+)-ATPase, and this process represents a major consumer of the gradient. We considered that any mutation resulting in an alteration of the electrochemical gradient could give rise to anomalous sensitivity to any cationic drug independently of its toxicity mechanism. Here, we describe a genomewide screen for mutants that present altered tolerance to hygromycin B, spermine, and tetramethylammonium. Two hundred twenty-six mutant strains displayed altered tolerance to all three drugs (202 hypersensitive and 24 hypertolerant), and more than 50% presented a strong or moderate growth defect at a limiting potassium concentration (1 mM). Functional groups such as protein kinases and phosphatases, intracellular trafficking, transcription, or cell cycle and DNA processing were enriched. Essentially, our screen has identified a substantial number of genes that were not previously described to play a direct or indirect role in potassium homeostasis. A subset of 27 representative mutants were selected and subjected to diverse biochemical tests that, in some cases, allowed us to postulate the basis for the observed phenotypes.


Assuntos
Proteínas de Transporte de Cátions/genética , Mutação/genética , Potássio/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/genética , Transporte Biológico/genética , Transporte Biológico/fisiologia , Proteínas de Transporte de Cátions/metabolismo , Homeostase , Higromicina B/farmacologia , Potenciais da Membrana , Fenótipo , ATPases Translocadoras de Prótons/genética , ATPases Translocadoras de Prótons/metabolismo , Compostos de Amônio Quaternário/farmacologia , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Espermina/farmacologia
19.
FEMS Yeast Res ; 11(6): 457-63, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21489135

RESUMO

Candida guilliermondii is an opportunistic emerging fungal agent of candidiasis often associated with oncology patients. This yeast also remains an interesting biotechnological model for the industrial production of value-added metabolites. The recent whole-genome sequencing of the C. guilliermondii ATCC 6260 reference strain provides an interesting resource for elucidating new molecular events supporting pathogenicity, antifungal resistance and for exploring the potential of yeast metabolic engineering. In the present study, we designed an efficient transformation system for C. guilliermondii wild-type strains using both nourseothricin- and hygromycin B-resistant markers. To demonstrate the potential of these drug-resistant cassettes, we carried out the disruption and the complementation of the C. guilliermondii FCY1 gene (which encodes cytosine deaminase) known to be associated with flucytosine sensitivity in yeast. These two new dominant selectable markers represent powerful tools to study the function of a large pallet of genes in this yeast of clinical and biotechnological interest.


Assuntos
Candida/genética , Genética Microbiana/métodos , Mutagênese Insercional/métodos , Seleção Genética , Transformação Genética , Antifúngicos/farmacologia , Farmacorresistência Fúngica , Higromicina B/farmacologia , Estreptotricinas/farmacologia
20.
World J Gastroenterol ; 16(13): 1660-4, 2010 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-20355246

RESUMO

AIM: To develop a hepatocyte cell line, we immortalized primary porcine hepatocytes with a retroviral vector SSR#69 containing the Simian Virus 40 T antigen (SV40Tag). METHODS: We first established a method of porcine hepatocyte isolation with a modified four-step retrograde perfusion technique. Then the porcine hepatocytes were immortalized with retroviral vector SSR#69 expressing SV40T and hygromycin-resistance genes flanked by paired loxP recombination targets. SV40T cDNA in the expanded cells was subsequently excised by Cre/LoxP site-specific recombination. RESULTS: The resultant hepatocytes with high viability (97%) were successfully immortalized with retroviral vector SSR#69. One of the immortalized clones showed the typical morphological appearance, TJPH-1, and was selected by clone rings and expanded in culture. After excision of the SV40T gene with Cre-recombinase, cells stopped growing. The population of reverted cells exhibited the characteristics of differentiated hepatocytes. CONCLUSION: In conclusion, we herein describe a modified method of hepatocyte isolation and subsequently established a porcine hepatocyte cell line mediated by retroviral transfer and site-specific recombination.


Assuntos
Técnicas de Cultura de Células , Técnicas de Transferência de Genes , Técnicas Genéticas , Hepatócitos/citologia , Retroviridae/genética , Animais , Sobrevivência Celular , Células Cultivadas , Cinamatos/farmacologia , Hepatócitos/metabolismo , Higromicina B/análogos & derivados , Higromicina B/farmacologia , Fígado/patologia , Recombinação Genética , Suínos , Porco Miniatura
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