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1.
J Am Chem Soc ; 143(37): 15152-15158, 2021 09 22.
Artigo em Inglês | MEDLINE | ID: mdl-34491039

RESUMO

HygY is a SPASM/twitch radical SAM enzyme hypothesized to catalyze the C2'-epimerization of galacamine during the biosynthesis of hygromycin B. This activity is confirmed via biochemical and structural analysis of the derivatized reaction products using chemically synthesized deuterated substrate, high-resolution mass spectrometry and 1H NMR. Electron paramagnetic resonance spectroscopy of the reduced enzyme is consistent with ligation of two [Fe4S4] clusters characteristic of the twitch radical SAM subgroup. HygY catalyzed epimerization proceeds with incorporation of a single solvent Hydron into the talamine product facilitated by the catalytic cysteine-183 residue. Mutation of this cysteine to alanine converts HygY from a C2'-epimerase to an C2'-dehydrogenase with comparable activity. The SPASM/twitch radical SAM enzymes often serve as anaerobic oxidases making the redox-neutral epimerases in this class rather interesting. The discovery of latent dehydrogenase activity in a twitch epimerase may therefore offer new insights into the mechanistic features that distinguish oxidative versus redox-neutral SPASM/twitch enzymes and lead to the evolution of new enzyme activities.


Assuntos
Higromicina B/metabolismo , Oxirredutases/metabolismo , Racemases e Epimerases/metabolismo , Streptomyces/metabolismo , Substituição de Aminoácidos , Proteínas de Bactérias , Espectroscopia de Ressonância de Spin Eletrônica , Regulação Bacteriana da Expressão Gênica , Regulação Enzimológica da Expressão Gênica , Mutação , Oxirredução , Racemases e Epimerases/genética
2.
ACS Chem Biol ; 15(6): 1417-1423, 2020 06 19.
Artigo em Inglês | MEDLINE | ID: mdl-32275383

RESUMO

Hygromycin B is an aminoglycoside antibiotic widely used in industry and biological research. However, most of its biosynthetic pathway has not been completely identified due to the immense difficulty in genetic manipulation of the producing strain. To address this problem, we developed an efficient system that combines clustered regularly interspaced short palindromic repeats (CRISPR)-Cas9-associated base editing and site-specific recombination instead of conventional double-crossover-based homologous recombination. This strategy was successfully applied to the in vivo inactivation of five candidate genes involved in the biosynthesis of hygromycin B by generating stop codons or mutating conserved residues within the encoding region. The results revealed that HygJ, HygL, and HygD are responsible for successive dehydrogenation, transamination, and transglycosylation of nucleoside diphosphate (NDP)-heptose. Notably, HygY acts as an unusual radical S-adenosylmethionine (SAM)-dependent epimerase for hydroxyl carbons, and HygM serves as a versatile methyltransferase in multiple parallel metabolic networks. Based on in vivo and in vitro evidence, the biosynthetic pathway for hygromycin B is proposed.


Assuntos
Vias Biossintéticas , Higromicina B/metabolismo , Streptomyces/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sistemas CRISPR-Cas , Edição de Genes/métodos , Glicosiltransferases/genética , Glicosiltransferases/metabolismo , Streptomyces/enzimologia , Streptomyces/genética , Especificidade por Substrato
3.
Mycopathologia ; 183(1): 241-249, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29022198

RESUMO

Scedosporium species are opportunistic pathogens responsible for a large variety of infections in humans. An increasing occurrence was observed in patients with underlying conditions such as immunosuppression or cystic fibrosis. Indeed, the genus Scedosporium ranks the second among the filamentous fungi colonizing the respiratory tracts of the CF patients. To date, there is very scarce information on the pathogenic mechanisms, at least in part because of the limited genetic tools available. In the present study, we successfully developed an efficient transformation and targeted gene disruption approach on the species Scedosporium aurantiacum. The disruption cassette was constructed using double-joint PCR procedure, and resistance to hygromycin B as the selection marker. This proof of concept was performed on the functional gene SODC encoding the Cu,Zn-superoxide dismutase. Disruption of the SODC gene improved susceptibility of the fungus to oxidative stress. This technical advance should open new research areas and help to better understand the biology of Scedosporium species.


Assuntos
Técnicas de Inativação de Genes/métodos , Genética Microbiana/métodos , Scedosporium/genética , Antifúngicos/metabolismo , Técnicas de Transferência de Genes , Genes Fúngicos , Higromicina B/metabolismo , Scedosporium/enzimologia , Seleção Genética , Superóxido Dismutase/genética
4.
PLoS One ; 10(8): e0136231, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26295942

RESUMO

Tuberculosis (TB) is the world's deadliest curable disease, responsible for an estimated 1.5 million deaths annually. A considerable challenge in controlling this disease is the prolonged multidrug chemotherapy (6 to 9 months) required to overcome drug-tolerant mycobacteria that persist in human tissues, although the same drugs can sterilize genetically identical mycobacteria growing in axenic culture within days. An essential component of TB infection involves intracellular Mycobacterium tuberculosis bacteria that multiply within macrophages and are significantly more tolerant to antibiotics compared to extracellular mycobacteria. To investigate this aspect of human TB, we created a physical cell culture system that mimics confinement of replicating mycobacteria, such as in a macrophage during infection. Using this system, we uncovered an epigenetic drug-tolerance phenotype that appears when mycobacteria are cultured in space-confined bioreactors and disappears in larger volume growth contexts. Efflux mechanisms that are induced in space-confined growth environments contribute to this drug-tolerance phenotype. Therefore, macrophage-induced drug tolerance by mycobacteria may be an effect of confined growth among other macrophage-specific mechanisms.


Assuntos
Antituberculosos/farmacologia , Tolerância a Medicamentos/genética , Dispositivos Lab-On-A-Chip , Modelos Biológicos , Mycobacterium smegmatis/efeitos dos fármacos , Antituberculosos/metabolismo , Carga Bacteriana , Transporte Biológico , Cinamatos/metabolismo , Cinamatos/farmacologia , Difusão , Dimetilpolisiloxanos , Epigênese Genética , Humanos , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Higromicina B/farmacologia , Isoniazida/metabolismo , Isoniazida/farmacologia , Macrófagos/microbiologia , Microdiálise , Mycobacterium smegmatis/genética , Mycobacterium smegmatis/crescimento & desenvolvimento , Mycobacterium tuberculosis/efeitos dos fármacos , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/crescimento & desenvolvimento , Ofloxacino/metabolismo , Ofloxacino/farmacologia , Fenótipo , Rifampina/metabolismo , Rifampina/farmacologia
5.
Biometals ; 26(6): 955-67, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-23990279

RESUMO

The GATA-type transcriptional repressor structural gene SRE1 was isolated from both the genomic DNA and mRNA of the marine yeast Aureobasidium pullulans HN6.2 by inverse PCR and RACE. An open reading frame (ORF) of 1,002 bp encoding a 334 amino acid protein (a calculated isoelectric point: 8.6) with a calculated molecular weight of 35.1 kDa was characterized. The corresponding gene had one single intron of 51 bp, and in its promoter two putative 5'-HGATAR-3' sequences could be recognized. The deduced protein from the cloned gene contained two conserved zinc-finger domains [Cys-(X2)-Cys-(X17)-Cys-(X2)-Cys)], nine sequences of Ser(Thr)-Pro-X-X which was characteristics of the regulator, and one cysteine-rich central domain which was located between the two zinc fingers. The SRE1 gene in A. pullulans HN6.2 was disrupted by integrating the hygromycin B phosphotransferase gene into the ORF of the SRE1 gene using homologous recombination. Two hundreds of the disruptants (Δsre1) (one of them was named R6) obtained still synthesized both intracellular and extracellular siderophores in the presence of added Fe(3+) and the expression of the SidA gene encoding L-ornithine N(5)-oxygenase in the disruptant R6 was also partially derepressed in the presence of added Fe(3+). The colonies of the disruptant R6 grown on the iron-replete medium with 1.5 and 2.0 mM Fe(3+) and also with 1.5 mM Fe(2+) became brown. In contrast, A. pullulans HN6.2 could not grow in the iron-replete medium with 1.5 mM and 2.0 mM Fe(3+). The brown-colored colonies of the disruptant R6 also had high level of siderophore and iron.


Assuntos
Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Ferro/metabolismo , Proteínas Repressoras/genética , Saccharomycetales/genética , Sideróforos/biossíntese , Motivos de Aminoácidos , Organismos Aquáticos , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas Fúngicas/metabolismo , Recombinação Homóloga , Higromicina B/metabolismo , Íntrons , Ponto Isoelétrico , Dados de Sequência Molecular , Peso Molecular , Mutagênese Insercional , Fases de Leitura Aberta , Regiões Promotoras Genéticas , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Proteínas Repressoras/metabolismo , Saccharomycetales/metabolismo , Transcrição Gênica
6.
Proc Natl Acad Sci U S A ; 110(19): 7784-9, 2013 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-23610419

RESUMO

Somatic hypermutation (SHM) requires not only the expression of activation-induced cytidine deaminase, but also transcription in the target regions. However, how transcription guides activation-induced cytidine deaminase in targeting SHM to the Ig genes is not fully understood. Here, we found that the "facilitates chromatin transcription" (FACT) complex promotes SHM by RNAi screening of transcription elongation factors. Furthermore, FACT and histone H3.3, a hallmark of transcription-coupled histone turnover, are enriched at the V(D)J region, 5' flanking sequence of the Sµ switch region and the light chain Jκ 5 segment region in the Ig loci. The regions with the most abundant deposition of FACT and H3.3 were also the most efficient targets of SHM. These results demonstrate the importance of histone-exchanging dynamics at the chromatin of SHM targets, especially in Ig genes.


Assuntos
Cromatina/química , Proteínas de Ligação a DNA/metabolismo , Proteínas de Grupo de Alta Mobilidade/metabolismo , Histonas/genética , Hipermutação Somática de Imunoglobulina , Fatores de Elongação da Transcrição/metabolismo , Linhagem Celular Tumoral , Cromatina/metabolismo , Cinamatos/metabolismo , Citidina Desaminase/genética , Análise Mutacional de DNA , Proteínas de Ligação a DNA/genética , Genes Reporter , Marcadores Genéticos , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Grupo de Alta Mobilidade/genética , Humanos , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Switching de Imunoglobulina , Imunoglobulinas/genética , Interferência de RNA , RNA Interferente Pequeno/metabolismo , Análise de Sequência de DNA , Transcrição Gênica , Fatores de Elongação da Transcrição/genética
7.
BMC Microbiol ; 12: 204, 2012 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-22966811

RESUMO

BACKGROUND: The genus Mycobacterium (M.) comprises highly pathogenic bacteria such as M. tuberculosis as well as environmental opportunistic bacteria called non-tuberculous mycobacteria (NTM). While the incidence of tuberculosis is declining in the developed world, infection rates by NTM are increasing. NTM are ubiquitous and have been isolated from soil, natural water sources, tap water, biofilms, aerosols, dust and sawdust. Lung infections as well as lymphadenitis are most often caused by M. avium subsp. hominissuis (MAH), which is considered to be among the clinically most important NTM. Only few virulence genes from M. avium have been defined among other things due to difficulties in generating M. avium mutants. More efforts in developing new methods for mutagenesis of M. avium and identification of virulence-associated genes are therefore needed. RESULTS: We developed a random mutagenesis method based on illegitimate recombination and integration of a Hygromycin-resistance marker. Screening for mutations possibly affecting virulence was performed by monitoring of pH resistance, colony morphology, cytokine induction in infected macrophages and intracellular persistence. Out of 50 randomly chosen Hygromycin-resistant colonies, four revealed to be affected in virulence-related traits. The mutated genes were MAV_4334 (nitroreductase family protein), MAV_5106 (phosphoenolpyruvate carboxykinase), MAV_1778 (GTP-binding protein LepA) and MAV_3128 (lysyl-tRNA synthetase LysS). CONCLUSIONS: We established a random mutagenesis method for MAH that can be easily carried out and combined it with a set of phenotypic screening methods for the identification of virulence-associated mutants. By this method, four new MAH genes were identified that may be involved in virulence.


Assuntos
Genética Microbiana/métodos , Mutagênese Insercional/métodos , Mycobacterium avium/genética , Recombinação Genética , Antibacterianos/metabolismo , Linhagem Celular , Cinamatos/metabolismo , Citocinas/metabolismo , Farmacorresistência Bacteriana , Humanos , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Macrófagos/imunologia , Macrófagos/microbiologia , Seleção Genética , Virulência , Fatores de Virulência/genética
8.
Mol Cell Biochem ; 311(1-2): 121-36, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18224426

RESUMO

The late endosome and vacuole of yeast Saccharomyces cerevisiae are functionally equivalent to the mammalian late endosome and lysosome. The late endosome is the convergence point of the biosynthetic and endocytic trafficking to the vacuole. Here, we describe a novel immunodetection screen to isolate mutants defective in trafficking the soluble hydrolase carboxypeptidase Y (CPY) at the late endosome to vacuole interface (env mutants). Mutants exhibit vacuolar morphology and endocytosis defects as assayed by electron, fluorescent, and nomarski microscopy. In biochemical assays, they internally accumulate p2CPY in a dense membrane compartment lacking vacuolar properties yet display normal secretion phenotypes. The results suggest vacuolar morphology and function defects that are exclusively at the late endosome/vacuole interface. env mutants define five complementation groups. The first gene of the collection to be cloned, ENV1 is allelic to VPS35 whose established function is in retrograde trafficking from late endosome to trans-Golgi network (TGN). Microscopic, biochemical, and growth analyses establish that env1 is distinct from other alleles of VPS35 in vacuolar morphology, growth characteristics, and internal accumulation of p2CPY. Our results indicate that ENV genes may define new gene functions at the late endosome to vacuole interface.


Assuntos
Produtos do Gene env , Proteínas de Membrana , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/citologia , Saccharomyces cerevisiae/genética , Vacúolos/metabolismo , Vacúolos/patologia , Proteínas de Transporte Vesicular , Alelos , Animais , Anti-Helmínticos/metabolismo , Catepsina A/metabolismo , Endocitose/fisiologia , Endossomos/metabolismo , Endossomos/ultraestrutura , Produtos do Gene env/genética , Produtos do Gene env/metabolismo , Teste de Complementação Genética , Humanos , Higromicina B/metabolismo , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Fenótipo , Saccharomyces cerevisiae/fisiologia , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Vacúolos/ultraestrutura , Proteínas de Transporte Vesicular/genética , Proteínas de Transporte Vesicular/metabolismo
9.
J Mol Biol ; 361(3): 450-61, 2006 Aug 18.
Artigo em Inglês | MEDLINE | ID: mdl-16859708

RESUMO

The regulation of non-autonomous retrotransposition is not known. A recombinant bearing a hygromycin gene and a viral-like 30 (VL30) retrotransposon tagged with an enhanced green fluorescent protein (EGFP) gene-based retrotransposition cassette was constructed and used for detection of retrotransposition events. Transfection of this recombinant produced retrotransposition events, detected both by EGFP fluorescence and PCR analysis, in hygromycin-selected clones of two established simian virus 40 (SV40)-transformed mouse NIH3T3 cell lines but not in normal NIH3T3 cells. The retrotransposition potential of this recombinant, as a provirus, was studied in stably transfected NIH3T3 clones. Transfection of these clones with either a wild-type or a mutant LE1135T SV40 large T antigen gene, not expressing small t protein, induced retrotransposition events at high frequencies as measured by fluorescence-activated cell scanning (FACS). In addition, measuring retrotransposition frequencies over a period of nine days following infection with isolated SV40 particles, revealed that the frequency of retrotransposition was time-dependent and induced as early as 24 h, increasing exponentially to high levels (>10(-2) events per cell per generation) up to nine days post-infection. Furthermore, ectopic expression of a cloned MoMLV-reverse transcriptase gene also produced retrotransposition events and suggested that the large T antigen most likely acted through induction of expression of endogenous reverse transcriptase genes. Our results show a direct correlation between SV40-cell transformation and VL30 retrotransposition and provide for the first time strong evidence that SV40 large T antigen up-regulates the retrotransposition of VL30 elements.


Assuntos
Antígenos Transformantes de Poliomavirus/fisiologia , Transformação Celular Viral , Retroelementos/fisiologia , Regulação para Cima , Animais , Antígenos Transformantes de Poliomavirus/genética , Antígenos Virais de Tumores/genética , Antígenos Virais de Tumores/fisiologia , Linhagem Celular Transformada , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Higromicina B/metabolismo , Camundongos , Vírus da Leucemia Murina de Moloney/enzimologia , Mutação , Células NIH 3T3 , Plasmídeos , DNA Polimerase Dirigida por RNA/genética , Retroelementos/genética
10.
J Mol Biol ; 357(1): 18-27, 2006 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-16426632

RESUMO

Chromatin insulators have been shown to stabilize transgene expression. Although insulators have been suggested to regulate the subcellular localization of chromosomes, it is still unclear whether this property is important for their anti-silencing activity. To investigate the underlying mechanisms governing the anti-silencing function of insulators, we studied the association of sea urchin arylsulfatase insulator (ArsI) with the nuclear matrix, which is a key component of the subnuclear localization of the genome. ArsI did not potentiate the nuclear matrix association with the transgene, even though it showed strong anti-silencing activity. This observation was in clear contrast to the results of the experiment using a human interferon-beta scaffold attachment region, in which the anti-silencing effect coincided with the enhanced matrix association. Chromatin immunoprecipitation analyses suggested that the absence of the matrix binding by ArsI was due to a lack of its binding to CCCTC-binding factor (CTCF), a protein known to be associated with matrix binding by chicken beta-globin insulator. Furthermore, ArsI maintained the nucleosome occupancy within the transgene at a constant level during long-term culture, although ArsI itself was not a nucleosome-excluding sequence. Taken together, these results suggest that this insulator exerts its anti-silencing activity by counteracting silencing-associated factors to maintain local chromatin environment, rather than by remodeling the subnuclear localization of the transgene locus.


Assuntos
Arilsulfatases/metabolismo , Cromatina/metabolismo , Inativação Gênica , Elementos Isolantes , Matriz Nuclear/metabolismo , Ouriços-do-Mar/metabolismo , Animais , Arilsulfatases/genética , Linhagem Celular Tumoral , Galinhas , Cromatina/química , Cinamatos/metabolismo , Epigênese Genética , Humanos , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Conformação de Ácido Nucleico , Ouriços-do-Mar/genética , Transgenes
11.
Curr Genet ; 48(6): 380-8, 2005 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-16292539

RESUMO

We have developed an Agrobacterium tumefaciens-mediated transformation (ATMT) protocol for the plant pathogenic fungus Colletotrichum graminicola, the cause of anthracnose leaf blight and stalk rot of corn. The ATMT results in higher transformation efficiencies than previously available polyethylene glycol-mediated protocols, and falcate spores can be used instead of protoplasts for transformation. Various experimental parameters were tested for their effects on transformation efficiencies. The parameters with the greatest influence were the A. tumefaciens strain used and the Ti-plasmid it carried, the ratio of bacterium to fungus during cocultivation, and the length of cocultivation. Southern analysis demonstrated that most transformants (80%) contained tandem integrations of plasmid sequences, and at least 36% had integrations at multiple sites in the genome. In a majority of cases (70%), the whole Ti-plasmid, and not just the T-DNA, had integrated as a series of tandem repeats. Tandem integrations, especially of the whole plasmid, make it difficult to rescue DNA from both flanks of the integrations with standard PCR-based approaches. Thus, ATMT may be unsuitable for insertional mutagenesis of C. graminicola without further modification.


Assuntos
Agrobacterium tumefaciens/genética , Colletotrichum/genética , Transformação Bacteriana , Fungos/genética , Técnicas de Transferência de Genes , Proteínas de Fluorescência Verde , Higromicina B/metabolismo , Higromicina B/farmacologia , Mutagênese Insercional , Plasmídeos Indutores de Tumores em Plantas/efeitos dos fármacos , Plasmídeos Indutores de Tumores em Plantas/metabolismo , Protoplastos/citologia , Esporos Bacterianos/genética
12.
J Natl Cancer Inst ; 95(5): 399-409, 2003 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-12618505

RESUMO

BACKGROUND: Gene silencing by abnormal methylation of promoter regions of regulatory genes is commonly associated with cancer. Silenced tumor suppressor genes are obvious targets for reactivation by methylation inhibitors such as 5-azacytidine (5-Aza-CR) and 5-aza-2'-deoxycytidine (5-Aza-CdR). However, both compounds are chemically unstable and toxic and neither can be given orally. We characterized a new demethylating agent, zebularine [1-(beta-D-ribofuranosyl)-1,2-dihydropyrimidin-2-one], which is a chemically stable cytidine analog. METHODS: We tested the ability of zebularine to reactivate a silenced Neurospora crassa gene using a hygromycin gene reactivation assay. We then analyzed the ability of zebularine to inhibit DNA methylation in C3H 10T1/2 Cl8 (10T1/2) mouse embryo cells as assayed by induction of a myogenic phenotype and in T24 human bladder carcinoma cells, using the methylation-sensitive single nucleotide primer extension (Ms-SNuPE) assay. We also evaluated the effects of zebularine (administered orally or intraperitoneally) on growth of EJ6 human bladder carcinoma cells grown in BALB/c nu/nu mice (five mice per group) and the in vivo reactivation of a methylated p16 gene in these cells. All statistical tests were two-sided. RESULTS: In N. crassa, zebularine inhibited DNA methylation and reactivated a gene previously silenced by methylation. Zebularine induced the myogenic phenotype in 10T1/2 cells, which is a phenomenon unique to DNA methylation inhibitors. Zebularine reactivated a silenced p16 gene and demethylated its promoter region in T24 bladder carcinoma cells in vitro and in tumors grown in mice. Zebularine was only slightly cytotoxic to T24 cells in vitro (1 mM zebularine for 48 hours decreased plating efficiency by 17% [95% confidence interval (CI) = 12.8% to 21.2%]) and to tumor-bearing mice (average maximal weight change in mice treated with 1000 mg/kg zebularine = 11% [95% CI = 4% to 19%]). Compared with those in control mice, tumor volumes were statistically significantly reduced in mice treated with high-dose zebularine administered by intraperitoneal injection (P<.001) or by oral gavage (P<.001). CONCLUSIONS: Zebularine is a stable DNA demethylating agent and the first drug in its class able to reactivate an epigenetically silenced gene by oral administration.


Assuntos
Cinamatos , Metilação de DNA/efeitos dos fármacos , DNA de Neoplasias/metabolismo , Inativação Gênica , Higromicina B/análogos & derivados , Neurospora crassa/genética , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Nucleosídeos de Pirimidina/farmacologia , Neoplasias da Bexiga Urinária/tratamento farmacológico , Neoplasias da Bexiga Urinária/metabolismo , Administração Oral , Animais , Southern Blotting , Citidina/análogos & derivados , DNA de Neoplasias/efeitos dos fármacos , Relação Dose-Resposta a Droga , Esquema de Medicação , Embrião de Mamíferos , Regulação Fúngica da Expressão Gênica/efeitos dos fármacos , Regulação Neoplásica da Expressão Gênica/efeitos dos fármacos , Inativação Gênica/efeitos dos fármacos , Humanos , Higromicina B/metabolismo , Infusões Parenterais , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Nus , Neurospora crassa/efeitos dos fármacos , Fosfotransferases (Aceptor do Grupo Álcool)/efeitos dos fármacos , Nucleosídeos de Pirimidina/administração & dosagem , Nucleosídeos de Pirimidina/química , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Fatores de Tempo , Células Tumorais Cultivadas , Neoplasias da Bexiga Urinária/genética
13.
Appl Environ Microbiol ; 68(5): 2404-10, 2002 May.
Artigo em Inglês | MEDLINE | ID: mdl-11976115

RESUMO

Aminocyclitols structurally related to streptamine, a 1,3-diaminocyclitol, are common components of the RNA-binding aminoglycoside antibiotics. The respective aminocyclitol cores of hygromycin B and spectinomycin are N(3)-methyl-2-deoxy-D-streptamine and N(1),N(3)-dimethyl-2-epi-streptamine. Adenosyl[methyl-(14)C]methionine:2-deoxystreptamine N-methyltransferase activities were detected in extracts of early-stationary-phase mycelia of the hygromycin B producer Streptomyces hygroscopicus subsp. hygroscopicus ATCC 27438 and the spectinomycin producer Streptomyces flavopersicus ATCC 19756. Extracts of both strains methylated the N(1)- and N(3)-amino groups of 2-deoxystreptamine, streptamine, and 2-epi-streptamine; the N(1)-amino group of N(3)-methyl-2-deoxy-D-streptamine, and the N(3)-amino group of N(1)-ethyl-2-deoxy-D-streptamine, the semisynthetic aminocyclitol of netilmicin. The mono[(14)C]methyl derivatives of 2-deoxystreptamine, streptamine, and 2-epi-streptamine were excellent substrates for L-glutamine:aminocyclitol aminotransferase and thereby provided a sensitive assay for derepression of this key enzyme, a generic biosynthetic marker that we have shown to be the only enzyme common to the biosyntheses of all major aminoglycoside antibiotics. Other prospective uses for these methyl-labeled 2-deoxystreptamine analogs are also described.


Assuntos
Antibacterianos/biossíntese , Higromicina B/metabolismo , Metiltransferases/metabolismo , Espectinomicina/metabolismo , Streptomyces/metabolismo , Radioisótopos de Carbono , Hexosaminas/metabolismo , Metilação , Fosforilação , Streptomyces/enzimologia , Especificidade por Substrato , Transaminases/metabolismo
14.
Theor Appl Genet ; 106(1): 51-7, 2002 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-12582870

RESUMO

Transgenic lines of indica rice were generated by Agrobacterium-mediated transformation with the choline oxidase ( codA) gene from Arthrobacter globiformis. Choline oxidase catalyses conversion of choline to glycine betaine. Glycine betaine is known to provide tolerance against a variety of stresses. Molecular analyses of seven independent transgenic lines as performed by Southern, Northern and Western hybridization revealed integration and expression of the transgene as well as inheritance in the progeny plants. A good correlation was observed between levels of mRNA and protein accumulation, and a significant amount of choline oxidase product, i.e. glycine betaine, accumulated in R0 as well as R1 plants. Mendelian as well as non-Mendelian segregation patterns were obtained in the progeny plants. Challenge studies performed with R1 plants by exposure to salt stress (0.15 M NaCl) for 1 week, followed by a recovery period, revealed that in some cases more than 50% of the transgenic plants could survive salt stress and set seed whereas wild-type plants failed to recover.


Assuntos
Cinamatos , Higromicina B/análogos & derivados , Nucleosídeo Desaminases/genética , Oryza/genética , Pressão Osmótica , Plantas Geneticamente Modificadas , Betaína/metabolismo , Citosina Desaminase , Higromicina B/metabolismo , Nucleosídeo Desaminases/metabolismo , Oryza/fisiologia
15.
Oncogene ; 10(12): 2307-14, 1995 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-7784078

RESUMO

The balanced t(15;17) rearrangement found in acute promyelocytic leukemia (APL) cells fuses PML on chromosome 15 to the retinoic acid receptor alpha (RAR alpha) on chromosome 17. PML/RAR alpha is expressed in APL cells with the non-rearranged alleles, PML and RAR alpha. Clinical remissions induced by all-trans-retinoic acid (RA) treatment of APL patients are linked to expression of PML/RAR apha, a transcription factor with reported dominant negative functions. The roles of PML and RAR alpha in the RA response of APL have not yet been fully explored. This study examines these roles by individually transfecting RAR alpha and PML into NB4 APL cells. NB4 is the sole APL cell line containing the t(15;17). RA treatment represses NB4 cell growth and induces a myeloid phentoype. Full length cDNAs for RAR alpha and PML were individually cloned into a CMV-driven expression vector containing the neomycin resistance gene. Surprisingly, none of the obtained stable transfectants expressed exogenous RAR alpha or PML mRNAs even when reverse transcription polymerase chain reaction (RT-PCR) detection assays were used. All clones expressed the neomycin resistance gene and were similar to parental NB4 cells in their growth and differentiation properties. An explanation explored for this lack of gene expression was that increased levels of RAR alpha or PML might suppress APL cell growth. To examine this possibility, transfection experiments were repeated using an episomal vector-based expression system containing an SV40 driven RAR alpha or PML cDNA and the hygromycin B resistance gene. A new selection strategy augmented expression of the desired cDNAs. A control episomal vector lacked a cDNA insert. Following electroporation and selection, exogenous RAR alpha expression was obtained. Compared to controls, the growth of these transfectants was markedly inhibited before and after RA-treatment and these cells more prominently induced myeloid maturation markers. In contrast, exogenous PML expression was transient since these transfectants did not appear to propagate in culture. These findings indicate: (1) a growth disadvantage for NB4 cells having increased expression of RAR alpha or PML and (2) increased RAR alpha expression augmented RA-mediated maturation of NB4 cells. This implicates a role for RAR alpha or PML in regulating the growth or differentiation of APL cells. It is hypothesized this occurs through antagonism of PML/RAR alpha actions in these leukemic cells.


Assuntos
Cinamatos , Leucemia Promielocítica Aguda/metabolismo , Leucemia Promielocítica Aguda/patologia , Proteínas de Neoplasias/metabolismo , Proteínas Nucleares , Proteínas de Fusão Oncogênica/metabolismo , Receptores do Ácido Retinoico/metabolismo , Fatores de Transcrição/metabolismo , Alelos , Sequência de Bases , Diferenciação Celular/efeitos dos fármacos , Divisão Celular/efeitos dos fármacos , Divisão Celular/genética , Cromossomos Humanos Par 15 , Cromossomos Humanos Par 17 , Resistência a Medicamentos/genética , Humanos , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Higromicina B/farmacologia , Leucemia Promielocítica Aguda/genética , Dados de Sequência Molecular , Neomicina/metabolismo , Proteínas de Neoplasias/genética , Proteínas de Fusão Oncogênica/genética , Reação em Cadeia da Polimerase/métodos , Proteína da Leucemia Promielocítica , RNA Mensageiro/metabolismo , Receptores do Ácido Retinoico/genética , Receptor alfa de Ácido Retinoico , Fatores de Transcrição/genética , Translocação Genética , Tretinoína/farmacologia , Proteínas Supressoras de Tumor
16.
EMBO J ; 14(5): 894-907, 1995 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-7889939

RESUMO

Poliovirus RNA replication occurs on the surface of membranous vesicles that proliferate throughout the cytoplasm of the infected cell. Since at least some of these vesicles are thought to originate within the secretory pathway of the host cell, we examined the effect of poliovirus infection on protein transport through the secretory pathway. We found that transport of both plasma membrane and secretory proteins was inhibited by poliovirus infection early in the infectious cycle. Transport inhibition did not require viral RNA replication or the inhibition of host cell translation by poliovirus. The viral proteins 2B and 3A were each sufficient to inhibit transport in the absence of viral infection. The intracellular localization of a secreted protein in the presence of 3A with the endoplasmic reticulum suggested that 3A directly blocks transport from the endoplasmic reticulum to the Golgi apparatus.


Assuntos
Glicoproteínas de Membrana , Poliovirus/metabolismo , Proteínas do Envelope Viral/metabolismo , Proteínas não Estruturais Virais/fisiologia , alfa 1-Antitripsina/metabolismo , Linhagem Celular , Permeabilidade da Membrana Celular , Citoplasma/química , Endocitose , Retículo Endoplasmático/metabolismo , Glicosilação , Complexo de Golgi/metabolismo , Humanos , Higromicina B/metabolismo , Higromicina B/farmacologia , Isomerases/análise , Plasmídeos , Biossíntese de Proteínas/efeitos dos fármacos , Isomerases de Dissulfetos de Proteínas , RNA Viral/biossíntese , Proteínas Recombinantes de Fusão/metabolismo , Transfecção , Proteínas do Envelope Viral/genética , alfa 1-Antitripsina/genética
17.
J Biol Chem ; 269(16): 12106-10, 1994 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-8163515

RESUMO

Semliki Forest virus encodes a small protein, known as 6K, that is associated with cellular membranes in the infected cells. This protein has been cloned and expressed in an inducible manner using pET vectors in Escherichia coli cells. Two different plasmids have been utilized; either the 6K gene is placed directly under the T7 promoter (pET3-6K) or the lac operator is located between the T7 promoter and the 6K gene (pET11-6K). In both systems, efficient synthesis of the 6K protein is achieved by induction with isopropyl-1-thio-beta-D-galactopyranoside plus rifampicin. The synthesis of the 6K protein is very toxic for E. coli causing increased membrane permeability and cell lysis as shown by alterations in permeability to either choline or hygromycin B. These results indicate that the togavirus 6K is a membrane-active protein that shows structural and functional similarities to poliovirus 3A protein. The function that the 6K protein could play during the virus replication cycle is discussed in the light of these findings.


Assuntos
Escherichia coli/metabolismo , Vírus da Floresta de Semliki/metabolismo , Proteínas do Envelope Viral/metabolismo , Sequência de Bases , Permeabilidade da Membrana Celular , Colina/metabolismo , Clonagem Molecular , Primers do DNA , Eletroforese em Gel de Poliacrilamida , Escherichia coli/efeitos dos fármacos , Expressão Gênica , Genes Virais , Higromicina B/metabolismo , Isopropiltiogalactosídeo/farmacologia , Cinética , Dados de Sequência Molecular , Plasmídeos , Rifampina/farmacologia , Vírus da Floresta de Semliki/genética , Fatores de Tempo , Proteínas do Envelope Viral/biossíntese , Proteínas do Envelope Viral/isolamento & purificação
18.
Exp Cell Res ; 185(1): 122-31, 1989 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-2553460

RESUMO

We have studied the internalization of targeted fusogenic liposome content to leukemic T cells (CEM) in vitro. We describe a method for the covalent coupling of T101 antibody to the surface of liposomes and the incorporation of fusogenic viral protein into the liposome membrane. Hygromycin B, an impermeant inhibitor of protein synthesis, was encapsulated in the targeted fusogenic liposomes and delivered directly to the cytoplasm of leukemic T cells by fusion between the two membranes. The cytotoxic effect was measured by [3H]thymidine incorporation. We show that CEM are rapidly and specifically killed by the drug encapsulated in the targeted fusogenic liposomes. This effect is due to the binding of the liposome by means of the antibody and then to the fusion of the liposome with the targeted cell membrane, mediated by F protein.


Assuntos
Leucemia-Linfoma de Células T do Adulto/patologia , Vírus da Parainfluenza 1 Humana/análise , Proteínas do Envelope Viral/metabolismo , Anticorpos/imunologia , Anticorpos/metabolismo , Antígenos de Superfície/análise , Antígenos de Superfície/imunologia , Membrana Celular/análise , Membrana Celular/metabolismo , Humanos , Higromicina B/análise , Higromicina B/metabolismo , Leucemia-Linfoma de Células T do Adulto/metabolismo , Lipossomos/análise , Lipossomos/metabolismo , Proteínas do Envelope Viral/análise , Proteínas do Envelope Viral/imunologia
19.
Yeast ; 5(4): 307-19, 1989.
Artigo em Inglês | MEDLINE | ID: mdl-2528864

RESUMO

Two mutations containing insertions and deletions in the promoter in the plasma membrane H+-ATPase gene (PMA1) of Saccharomyces cerevisiae have been introduced into the genome by homologous recombination, replacing the wild-type gene. The resulting strains have 15 and 23% of the wild-type ATPase content. Decreased levels of ATPase correlate with decreased rates of proton efflux and decreased uptake rates of amino acids, methylamine, hygromycin B and tetraphenylphosphonium. This supports a central role of the enzyme in yeast bioenergetics. However, the final accumulation gradient of tetraphenylphosphonium is not affected by the mutations and that of methylamine and 2-aminoisobutyric acid is only decreased in the most extreme mutant. Apparently, kinetic constraints seem to prevent the equilibration of yeast active transports with the electrochemical proton gradient. As expected from their transport defects, the ATPase-deficient mutants are more resistant to hygromycin B and more sensitive to acidification than wild-type yeast. Mutant cells are very elongated, suggesting a structural role of the ATPase in the yeast surface.


Assuntos
ATPases Translocadoras de Prótons/biossíntese , Saccharomyces cerevisiae/metabolismo , Transporte Biológico Ativo , Southern Blotting , Membrana Celular/enzimologia , DNA Fúngico/genética , Regulação da Expressão Gênica , Glucose/metabolismo , Concentração de Íons de Hidrogênio , Higromicina B/metabolismo , Higromicina B/farmacologia , Mutação , Regiões Promotoras Genéticas , ATPases Translocadoras de Prótons/genética , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/fisiologia , Saccharomyces cerevisiae/ultraestrutura
20.
Virology ; 155(2): 534-44, 1986 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-3024398

RESUMO

Semliki Forest virus-infected BHK cells or herpes simplex virus-infected Vero cells were incubated with the protein synthesis inhibitors hygromycin B and gougerotin. Infected cells take up no more [3H]hygromycin or [3H]gougerotin than do mock-infected cells, at a time p.i. at which either compound is more inhibitory to protein synthesis in infected, than in mock-infected cells. The concentrations of hygromycin and gougerotin required to inhibit protein synthesis in intact cells (irrespective of whether they are infected or not) are several orders of magnitude higher than those required in either permeabilized cells or in cell-free systems. Infected cells take up 86Rb+ at the same rate as mock-infected cells, their intracellular content of K+ is the same, and the activity of the Na+ pump is the same. It is concluded that the increased efficacy of hygromycin and gougerotin in virus-infected cells is a consequence of altered intracellular compartmentation and that increases in permeability of the plasma membrane, if any, are so small as to be undetectable by direct methods.


Assuntos
Antibacterianos/farmacologia , Permeabilidade da Membrana Celular , Cinamatos , Herpes Simples/fisiopatologia , Higromicina B/farmacologia , Infecções por Togaviridae/fisiopatologia , Animais , Transporte Biológico , Cátions Monovalentes/metabolismo , Compartimento Celular , Cricetinae , Higromicina B/análogos & derivados , Higromicina B/metabolismo , Biossíntese de Proteínas , Nucleosídeos de Pirimidina/farmacologia , Vírus da Floresta de Semliki/fisiologia , Simplexvirus/fisiologia , ATPase Trocadora de Sódio-Potássio/metabolismo , Células Vero
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