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1.
J Food Sci ; 88(8): 3332-3340, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-37421349

RESUMO

Sunflower seeds are rich in protein and can be an excellent raw material for the production of umami peptides. In this study, sunflower seed meal, which was defatted at a low temperature, was taken as the raw material, and proteins were separated, followed by hydrolyzation for 4 h by flavourzyme® to obtain hydrolysates with strong umami intensity. These hydrolysates were deamidated using glutaminase to increase the umami intensity. The highest umami value of 11.48 was recorded for hydrolysates deamidated for 6 h, and the umami intensity was determined. The umami hydrolysates mixed with 8.92 mmol IMP + 8.02 mmol MSG showed the highest umami value of 25.21. Different concentrations of ethanol were used for further separation of hydrolysates, and the highest umami value of 13.54 was observed for 20% ethanol fraction. The results of this study provide utilization method for sunflower seed meal protein and a theoretical basis for the preparation of umami peptides. PRACTICAL APPLICATION: A large number of sunflower seed meals after oil production are used as feed for livestock and poultry. Sunflower seed meal is rich in protein, and umami amino acid composition in sunflower seed meal is up to 25%-30%, which is potentially an excellent raw material for the production of umami peptides. The umami flavor and synergistic effect of obtained hydrolysates, with MSG and IMP, were analyzed in the present study. We intend to provide a novel way for utilization of protein from sunflower seed meal along with a theoretical basis for the preparation of umami peptides.


Assuntos
Helianthus , Glutamato de Sódio , Glutamato de Sódio/metabolismo , Hidrolisados de Proteína , Paladar , Peptídeos , Inosina Monofosfato/química , Refeições , Inosina
2.
Molecules ; 26(23)2021 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-34885748

RESUMO

Although a monoclonal antibody targeting the multifunctional ectoenzyme CD38 is an FDA-approved drug, few small molecule inhibitors exist for this enzyme that catalyzes inter alia the formation and metabolism of the N1-ribosylated, Ca2+-mobilizing, second messenger cyclic adenosine 5'-diphosphoribose (cADPR). N1-Inosine 5'-monophosphate (N1-IMP) is a fragment directly related to cADPR. 8-Substituted-N1-IMP derivatives, prepared by degradation of cyclic parent compounds, inhibit CD38-mediated cADPR hydrolysis more efficiently than related cyclic analogues, making them attractive for inhibitor development. We report a total synthesis of the N1-IMP scaffold from adenine and a small initial compound series that facilitated early delineation of structure-activity parameters, with analogues evaluated for inhibition of CD38-mediated hydrolysis of cADPR. The 5'-phosphate group proved essential for useful activity, but substitution of this group by a sulfonamide bioisostere was not fruitful. 8-NH2-N1-IMP is the most potent inhibitor (IC50 = 7.6 µM) and importantly HPLC studies showed this ligand to be cleaved at high CD38 concentrations, confirming its access to the CD38 catalytic machinery and demonstrating the potential of our fragment approach.


Assuntos
ADP-Ribosil Ciclase 1/antagonistas & inibidores , ADP-Ribose Cíclica/metabolismo , Inosina/metabolismo , Bibliotecas de Moléculas Pequenas/química , ADP-Ribosil Ciclase 1/metabolismo , Adenosina Difosfato Ribose/metabolismo , Cálcio/metabolismo , Catálise/efeitos dos fármacos , Humanos , Hidrólise/efeitos dos fármacos , Inosina Monofosfato/química , Bibliotecas de Moléculas Pequenas/farmacologia , Relação Estrutura-Atividade
3.
J Food Sci ; 85(5): 1462-1469, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32347552

RESUMO

The purpose of this study was to confirm inosine monophosphate (IMP) generation and to clarify the decomposition pathway of adenosine monophosphate (AMP) by investigating the properties of AMP, IMP, and adenosine (AdR) decomposition enzymes in Japanese scallop (Patinopecten yessoensis). The results showed that IMP accumulated due to AMP decomposition via endogenous enzymes in scallops stored at both 4 °C and 20 °C. The AMP decomposition rate was highest in the supernatant of homogenized scallop adductor muscle, followed by the suspended solution and precipitate, while IMP could not be decomposed in scallop. The results indicated that the activity of AdR deaminase was very high, and this enzyme was involved in an intracellular process in scallop. Moreover, 1 min of heating exerted little influence on the AMP and AdR decomposition rates, while 5 min of heating induced enzyme denaturation. The IMP generation rate increased dramatically in scallop crude enzyme solution containing 5 mM ethylenediaminetetraacetic acid (EDTA). This suggests that the major pathway of AMP decomposition might change with variations in metal ion concentrations in Japanese scallop. PRACTICAL APPLICATION: IMP generation in Japanese scallop (Patinopecten yessoensis) caused by endogenous enzymes was confirmed. IMP is very important for the umami taste (a pleasant savory taste) of aquatic products. As IMP accumulation might be achieved by changing the concentration of divalent metal ions and no IMP 5'-nucleotidase activity was detected in scallop, a suitable process to produce good flavor scallops with high IMP contents might be developed.


Assuntos
Monofosfato de Adenosina/análise , Monofosfato de Adenosina/química , Músculos/química , Pectinidae/química , Alimentos Marinhos/análise , Monofosfato de Adenosina/metabolismo , Animais , Humanos , Inosina Monofosfato/química , Japão , Músculo Esquelético/metabolismo , Paladar
4.
RNA Biol ; 16(10): 1504-1512, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31318636

RESUMO

Arabidopsis thaliana aminohydrolase (AtADAL) has been shown to be involved in the metabolism of N6-methyl-AMP, a proposed intermediate during m6A-modified RNA metabolism, which can be subsequently incorporated into newly synthesized RNA by Pol II. It has been proposed that AtADAL will prevent N6-methyl-AMP reuse and catabolize it to inosine monophosphate (IMP). Here, we have solved the crystal structures of AtADAL in the apo form and in complex with GMP and IMP in the presence of Zn2+. We have identified the substrate-binding pocket of AtADAL and compared it with that for adenosine deaminase (ADA), adenine deaminase (ADE) and AMP deaminase (AMPD) from multiple species. The comparisons reveal that plant ADAL1 may have the potential ability to catalyze different alkyl-group substituted substrates.


Assuntos
AMP Desaminase/química , Monofosfato de Adenosina/química , Guanosina Monofosfato/química , Inosina Monofosfato/química , AMP Desaminase/metabolismo , Monofosfato de Adenosina/metabolismo , Sequência de Aminoácidos , Arabidopsis , Sítios de Ligação , Guanosina Monofosfato/metabolismo , Inosina Monofosfato/metabolismo , Ligantes , Modelos Moleculares , Conformação Molecular , Ligação Proteica , Relação Estrutura-Atividade , Zinco/química
5.
J Anim Physiol Anim Nutr (Berl) ; 103(4): 1099-1106, 2019 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-31025778

RESUMO

The present study was conducted to investigate the effects of Enterococcus faecium (E. faecium) on the meat quality and antioxidant capacity of muscle in broilers. A total of 600 Arbor Acre broiler chickens (1-day-old, male) were randomly divided into five treatments with six replicates (20 chickens per replicate) for each treatment. The five treatments were the control treatment (CON, basal diet), antibiotic treatment (ANT, basal diet supplemented with 0.1% chlortetracycline) and E. faecium-supplemented treatments (LEF, MEF and HEF, basal diet supplemented with 50, 100 and 200 mg/kg of E. faecium respectively). The experiment lasted 42 days in two periods of 21 days. Results showed that there were no differences in breast meat quality among different treatments (p > 0.05). Compared with the CON and ANT treatments, the yellowness of thigh meat in E. faecium-supplemented treatments was significantly increased (p < 0.05); the shear force of thigh meat in the LEF and MEF treatments was lower than that of the CON treatment (p < 0.05). In addition, the concentration of the inosine monophosphate (IMP) in the breast and thigh meat of the MEF treatment was significantly higher than that of the other treatments (p < 0.05). At 21 days, the total antioxidant capability (T-AOC) level and glutathione peroxidase (GSH-Px) activity of breast meat and superoxide dismutase (SOD) in the thigh meat of the MEF treatment were greatly increased (p < 0.05). At 42 days of age, the catalase (CAT), GSH-Px and T-AOC activities in the breast meat of the MEF treatment were increased (p < 0.05) and the CAT activity of thigh meat in the LEF and MEF treatments was increased (p < 0.05). In conclusion, E. faecium supplementation increased the meat quality of the thigh muscle, increased the IMP content and the activities of CAT, SOD, T-AOC, and GSH-Px of muscle in broilers. Supplementation with 100 mg/kg E. faecium had the greatest effects.


Assuntos
Antioxidantes/metabolismo , Enterococcus faecium , Carne/normas , Músculo Esquelético/metabolismo , Probióticos/administração & dosagem , Animais , Galinhas/fisiologia , Inosina Monofosfato/química , Masculino , Músculo Esquelético/química
6.
Nucleic Acids Res ; 45(20): 11515-11524, 2017 Nov 16.
Artigo em Inglês | MEDLINE | ID: mdl-29036687

RESUMO

Nucleotide quality surveillance enzymes play important roles in human health, by detecting damaged molecules in the nucleotide pool and deactivating them before they are incorporated into chromosomal DNA or adversely affect metabolism. In particular, deamination of adenine moiety in (deoxy)nucleoside triphosphates, resulting in formation of (d)ITP, can be deleterious, leading to DNA damage, mutagenesis and other harmful cellular effects. The 21.5 kDa human enzyme that mitigates this damage by conversion of (d)ITP to monophosphate, ITPA, has been proposed as a possible therapeutic and diagnostic target for multiple diseases. Measuring the activity of this enzyme is useful both in basic research and in clinical applications involving this pathway, but current methods are nonselective and are not applicable to measurement of the enzyme from cells or tissues. Here, we describe the design and synthesis of an ITPA-specific chimeric dinucleotide (DIAL) that replaces the pyrophosphate leaving group of the native substrate with adenosine triphosphate, enabling sensitive detection via luciferase luminescence signaling. The probe is shown to function sensitively and selectively to quantify enzyme activity in vitro, and can be used to measure the activity of ITPA in bacterial, yeast and human cell lysates.


Assuntos
Trifosfato de Adenosina/química , Ensaios Enzimáticos/métodos , Corantes Fluorescentes/química , Inosina Monofosfato/análogos & derivados , Medições Luminescentes/métodos , Pirofosfatases/metabolismo , Extratos Celulares/química , Linhagem Celular Tumoral , DNA/genética , Dano ao DNA/genética , Desaminação , Células HeLa , Humanos , Inosina Monofosfato/química , Pirofosfatases/genética , Interferência de RNA , RNA Interferente Pequeno/genética
7.
Appl Biochem Biotechnol ; 180(8): 1635-1643, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27539573

RESUMO

Adenylate deaminase (AMPD, EC 3.5.4.6) is an aminohydrolase that widely used in the food and medicine industries. In this study, the gene encoding Aspergillus oryzae AMPD was cloned and expressed in Escherichia coli. Induction with 0.75 mM isopropyl ß-D-l-thiogalactopyranoside resulted in an enzyme activity of 1773.9 U/mL. Recombinant AMPD was purified to electrophoretic homogeneity using nickel affinity chromatography, and its molecular weight was calculated as 78.6 kDa. Purified AMPD exhibited maximal activity at 35 °C, pH 6.0 and 30 mM K+, with apparent K m and V max values of 2.7 × 10-4 M and 77.5 µmol/mg/min under these conditions. HPLC revealed that recombinant AMPD could effectively catalyse the synthesis of inosine-5'-monophosphate (IMP) with minimal by-products, indicating high specificity and suggesting that it could prove useful for IMP production.


Assuntos
AMP Desaminase/isolamento & purificação , AMP Desaminase/metabolismo , Aspergillus oryzae/enzimologia , Monofosfato de Adenosina/química , Monofosfato de Adenosina/metabolismo , Aspergillus oryzae/efeitos dos fármacos , Biocatálise/efeitos dos fármacos , Clonagem Molecular , Eletroforese em Gel de Poliacrilamida , Estabilidade Enzimática/efeitos dos fármacos , Concentração de Íons de Hidrogênio , Inosina Monofosfato/química , Inosina Monofosfato/metabolismo , Íons , Cinética , Metais/farmacologia , Peso Molecular , Proteínas Recombinantes/metabolismo , Temperatura
8.
Spectrochim Acta A Mol Biomol Spectrosc ; 151: 679-86, 2015 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-26163792

RESUMO

Analogues of intermediates involved in the purine salvage pathway can be exploited as potential drug molecules against enzymes of protozoan parasites. To develop such analogues we need knowledge of the solution structures, predominant tautomer at physiological pH and protonation-state of the corresponding natural ligand. In this regard, we have employed ultraviolet resonance Raman spectroscopy (UVRR) in combination with density functional theory (DFT) to study the solution structures of two relatively unexplored intermediates, 6-phosphoryl IMP (6-pIMP) and succinyl adenosine-5'-monophosphate (sAMP), of purine salvage pathway. These molecules are intermediates in a two step enzymatic process that converts inosine-5'-monpophosphate (IMP) to adenosine-5'-monophosphate (AMP). Experimental data on the molecular structure of these ligands is lacking. We report UVRR spectra of these two ligands, obtained at an excitation wavelength of 260 nm. Using isotope induced shifts and DFT calculations we assigned observed spectra to computed normal modes. We find that sAMP exists as neutral species at physiological pH and the predominant tautomer in solution bears proton at N10 position of purine ring. Though transient in solution, 6-pIMP is captured in the enzyme-bound form. This work provides the structural information of these ligands in solution state at physiological pH. We further compare these structures with the structures of AMP and IMP. Despite the presence of similar purine rings in AMP and sAMP, their UVRR spectra are found to be very different. Similarly, though the purine ring in 6-pIMP resembles that of IMP, UVRR spectra of the two molecules are distinct. These differences in the vibrational spectra provide direct information on the effects of exocyclic groups on the skeletal structures of these molecules. Our results identify key bands in the vibrational spectra of these ligands which may serve as markers of hydrogen bonding interactions upon binding to the active-sites of enzymes.


Assuntos
Purinas/química , Monofosfato de Adenosina/análogos & derivados , Monofosfato de Adenosina/química , AMP Cíclico/análogos & derivados , AMP Cíclico/química , Concentração de Íons de Hidrogênio , Inosina Monofosfato/análogos & derivados , Inosina Monofosfato/química , Ligantes , Estrutura Molecular , Soluções , Análise Espectral Raman/métodos , Raios Ultravioleta , Vibração
9.
Poult Sci ; 94(8): 1964-72, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26049798

RESUMO

The effects of bird age and the cooking process on the levels of several taste-active compounds, including inosine 5'-monophosphate (IMP), glutamic acid, cysteine, reducing sugars, as well as oleic, linoleic, arachidonic, and docosahexaenoic acids (DHA), in the breast and leg meats from a certified meat-type commercial Korean native chicken (KNC) strain (Woorimatdag) were investigated. KNC cocks were raised under similar standard conditions at a commercial chicken farm, and breast and leg meats from birds of various ages (10, 11, 12, 13, and 14 wk; 10 birds/age group) were obtained. After raw and cooked meat samples were prepared, they were analyzed for the aforementioned taste-active compounds. Compared to the leg meat, KNC breast meat had higher levels of IMP, arachidonic acid, and DHA, but lower levels of the other taste-active compounds (P < 0.05). KNC meat lost significant amounts of all the taste-active compounds, excluding oleic and linoleic acids, during the cooking process (P < 0.05). However, bird age only had a minor effect on the levels of these taste-active compounds. The results of this study provide useful information regarding the levels of taste-active compounds in KNC meat from birds of different ages, and their fate during the cooking process. This information could be useful for selection and breeding programs, and for popularizing native chicken meat.


Assuntos
Carboidratos/química , Culinária , Cisteína/química , Ácido Glutâmico/química , Inosina Monofosfato/química , Carne/análise , Envelhecimento , Animais , Galinhas , Ácidos Graxos/química , República da Coreia , Paladar
10.
Chem Rec ; 15(2): 511-23, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25707449

RESUMO

Cyclic adenosine 5'-diphosphate ribose (cADPR) is a second messenger in the Ca(2+) signaling pathway. To elucidate its molecular mechanism in calcium release, a series of cADPR analogues with modification on ribose, nucleobase, and pyrophosphate have been investigated. Among them, the analogue with the modification of the northern ribose by ether linkage substitution (cIDPRE) exhibits membrane-permeate Ca(2+) agonistic activity in intact HeLa cells, human T cells, mouse cardiac myocytes and neurosecretory PC12 cell lines; thus, cIDPRE and coumarin-caged cIDPRE are valuable probes to investigate the cADPR-mediated Ca(2+) signal pathway.


Assuntos
Sinalização do Cálcio , Cálcio/metabolismo , ADP-Ribose Cíclica/química , Sondas Moleculares/química , Miócitos Cardíacos/metabolismo , Animais , Cumarínicos/química , ADP-Ribose Cíclica/síntese química , Células HeLa , Humanos , Inosina Monofosfato/análogos & derivados , Inosina Monofosfato/química , Células Jurkat , Camundongos , Mimetismo Molecular , Sondas Moleculares/síntese química , Miócitos Cardíacos/citologia , Miócitos Cardíacos/efeitos dos fármacos , Células PC12 , Ratos , Relação Estrutura-Atividade
11.
J Anim Sci ; 92(2): 645-51, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24398830

RESUMO

This study was conducted to determine the ability of a supplemental nucleotide mixture high in inosine 5'-monophosphate (5'IMP) to enhance pig growth and health after weaning. Pigs (n = 120 and 7.3 ± 0.1 kg) were allotted at weaning to phase 1 diets (3.3 Mcal ME/kg, 22.4% CP, and 1.34% standardize ileal digestible [SID] Lys) supplemented with 0.0, 0.2, 0.5, or 1.0 g/kg of a nucleotide additive. After 7 d, pigs were fed phase 2 diets (3.3 Mcal ME/kg, 21.3% CP, and 1.20% SID Lys) for 21 d with the same additive levels. Growth performance was measured, blood samples were collected for analysis of immune responses and oxidative stress, and fecal scoring was completed. During phase 1, ADG, ADFI, and G:F linearly increased (P < 0.05) as dietary nucleotides increased. During phase 2, ADFI increased linearly (P < 0.05). Over the entire 28-d trial, ADG and ADFI increased linearly (P < 0.05) as nucleotide content increased. Immune responses were not altered during phase 1. At the end of phase 2, IgA showed a quadratic effect (P < 0.05) with the lowest concentrations at 0.2 and 0.5 g/kg of the nucleotide additive whereas IgM changed cubically (P < 0.05) with the lowest concentration at 0.5 g/kg. The cytokine tumor necrosis factor-α tended to decrease linearly (P = 0.093) as nucleotide content increased whereas the marker for oxidative DNA damage, 8-hydroxy-deoxyguanosine, tended to have a quadratic effect (P = 0.064) with the lowest levels of damage in pigs fed 0.5 g/kg. On d 8 after changing from the phase 1 to phase 2 diets, fecal diarrhea scores tended to be lowest (P = 0.072) when pigs were fed 0.5 g/kg of the nucleotide additive. Overall, 1.0 g/kg of the nucleotide additive provided the most benefit to the growth performance of nursery pigs. However, 0.5 g/kg of the nucleotide additive reduced immune responses and oxidative stress. In conclusion, the addition of a nucleotide mixture high in 5'IMP to the diet of young pigs may be beneficial to enhance growth performance and reduce postweaning stress.


Assuntos
Suplementos Nutricionais , Inosina Monofosfato/química , Inosina Monofosfato/farmacologia , Doenças dos Suínos/prevenção & controle , Suínos/crescimento & desenvolvimento , Ração Animal/análise , Fenômenos Fisiológicos da Nutrição Animal , Animais , Diarreia/prevenção & controle , Diarreia/veterinária , Dieta/veterinária , Fezes/química , Suínos/imunologia
12.
Biosci Biotechnol Biochem ; 77(6): 1214-8, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23748759

RESUMO

We examined the mode of IMP and pyrophosphate enhancement of myosin and actin extraction from porcine meat. Extractabilities were determined after homogenates, prepared by adding 9 volumes of 0.3, 0.4, or 0.5 M NaCl solutions containing 0 to 36 mM IMP and 0 to 9 mM tetrapotassium pyrophosphate (KPP) to minced pork, were incubated at 4 °C for 0 or 12 h. Irrespective of the NaCl concentrations, IMP-induced extraction of both proteins increased with increasing extraction time. In contrast, that of KPP did not. When 0.3 M NaCl solutions containing both IMP and KPP were used, the solutions with 1.5 mM KPP showed marked enhancement of IMP-induced myosin and actin extraction. Incorporating these results with our previously published data (Nakamura et al., Biosci. Biotechnol. Biochem., 76, 1611-1615 (2012)), we hypothesized that IMP and KPP have the ability to release thick and thin filaments from restraints in myofibrils, in addition to the ability to dissociate actomyosin into myosin and actin, and that the restraint-releasing ability of IMP is dependent on reaction time and NaCl concentration while that of KPP is not.


Assuntos
Actinas/metabolismo , Actomiosina/metabolismo , Inosina Monofosfato/farmacologia , Carne , Miosinas/metabolismo , Actinas/química , Animais , Difosfatos/química , Difosfatos/metabolismo , Difosfatos/farmacologia , Inosina Monofosfato/química , Miofibrilas/efeitos dos fármacos , Compostos de Potássio/metabolismo , Compostos de Potássio/farmacologia , Cloreto de Sódio/metabolismo , Cloreto de Sódio/farmacologia , Suínos
13.
Biosci Biotechnol Biochem ; 76(9): 1611-5, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22972349

RESUMO

We examined the effects of nucleoside monophosphates on the dissociation of actomyosin into myosin and actin. GMP was effective only among GMP, CMP, dTMP, and UMP. Hence we concluded that purine-based nucleoside monophosphates such as GMP, AMP, and IMP are effective, incorporating this with our previous results (Okitani A et al., Biosci. Biotechnol. Biochem., 72, 2005-2011 (2008)). Then we examined whether IMP enhances the extraction of myosin and actin as well as pyrophosphate (KPP), using homogenates of pork with 9 volumes of 0.3, 0.4, and 0.5 M NaCl solutions containing 0-36 mM IMP or 0-9 mM KPP. Maximum extractability, about 70% for both proteins, was attained by means of NaCl solutions containing 36 mM IMP. These values were comparable to the maximum values, about 90% for myosin and 50% for actin, attained by means of solutions containing 9 mM KPP. Hence we concluded that IMP enhances the extraction of myosin and actin from porcine meat.


Assuntos
Actinas/química , Actomiosina/química , Inosina Monofosfato/química , Carne , Músculo Esquelético/química , Miosinas/química , Animais , Difosfatos/química , Eletroforese em Gel de Poliacrilamida , Extração Líquido-Líquido/métodos , Compostos de Potássio/química , Cloreto de Sódio/química , Suínos
14.
PLoS Comput Biol ; 7(12): e1002295, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-22174667

RESUMO

Cytosolic 5'-nucleotidase II (cN-II) regulates the intracellular nucleotide pools within the cell by catalyzing the dephosphorylation of 6-hydroxypurine nucleoside 5'-monophosphates. Beside this physiological function, high level of cN-II expression is correlated with abnormal patient outcome when treated with cytotoxic nucleoside analogues. To identify its specific role in the resistance phenomenon observed during cancer therapy, we screened a particular class of chemical compounds, namely ribonucleoside phosphonates to predict them as potential cN-II inhibitors. These compounds incorporate a chemically and enzymatically stable phosphorus-carbon linkage instead of a regular phosphoester bond. Amongst them, six compounds were predicted as better ligands than the natural substrate of cN-II, inosine 5'-monophosphate (IMP). The study of purine and pyrimidine containing analogues and the introduction of chemical modifications within the phosphonate chain has allowed us to define general rules governing the theoretical affinity of such ligands. The binding strength of these compounds was scrutinized in silico and explained by an impressive number of van der Waals contacts, highlighting the decisive role of three cN-II residues that are Phe 157, His 209 and Tyr 210. Docking predictions were confirmed by experimental measurements of the nucleotidase activity in the presence of the three best available phosphonate analogues. These compounds were shown to induce a total inhibition of the cN-II activity at 2 mM. Altogether, this study emphasizes the importance of the non-hydrolysable phosphonate bond in the design of new competitive cN-II inhibitors and the crucial hydrophobic stacking promoted by three protein residues.


Assuntos
5'-Nucleotidase/antagonistas & inibidores , 5'-Nucleotidase/química , Ribonucleotídeos/química , 5'-Nucleotidase/metabolismo , Sítios de Ligação , Hidrólise , Inosina Monofosfato/química , Inosina Monofosfato/metabolismo , Modelos Moleculares , Ribonucleotídeos/metabolismo , Relação Estrutura-Atividade , Especificidade por Substrato
15.
Biosci Biotechnol Biochem ; 75(11): 2125-31, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-22056436

RESUMO

Food contains various taste substances. Among them, umami substances play an important role with regard to the perception of the taste of food, but, few studies have examined the taste characteristics of representative umami substances other than monosodium L-glutamate (MSG). By conducting mouse behavioral studies (the 48-h 2-bottle preference test and the conditioned taste aversion test) and assessing gustatory nerve responses, we investigated the taste characteristics of unique umami substances, including sodium succinate, L-theanine, betaine, and the enantiomer of MSG, D-MSG. Furthermore, we examined the synergy of umami with inosine 5'-monophoshate (IMP). In the case of the mice, sodium succinate had an umami taste and showed strong synergy with IMP. L-theanine showed synergy with IMP but did not have an umami taste without IMP. In contrast, betaine did not have an umami taste or synergy with IMP. D-MSG might have weak synergy with IMP.


Assuntos
Betaína/química , Nervos Cranianos/fisiologia , Comportamento Alimentar , Inosina Monofosfato/química , Glutamato de Sódio/química , Percepção Gustatória , Animais , Glutamatos/química , Camundongos , Camundongos Endogâmicos C57BL
16.
Chem Commun (Camb) ; 47(33): 9462-4, 2011 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-21785757

RESUMO

A concise method for the formation of cyclopyrophosphate of cIDPRE as well as sulfur and selenium-substituted pyrophosphate cIDPRE analogues (P(1)(S)-cIDPRE, P(1)(Se)-cIDPRE, P(2)(S)-cIDPRE and P(2)(Se)-cIDPRE) was reported and one of the P(S)-diastereoisomers, P(1)(S)-cIDPRE-1, is a novel membrane-permeant cADPR antagonist.


Assuntos
ADP-Ribose Cíclica/análogos & derivados , Difosfatos/química , Bloqueadores dos Canais de Cálcio/síntese química , Bloqueadores dos Canais de Cálcio/química , Inosina Monofosfato/análogos & derivados , Inosina Monofosfato/síntese química , Inosina Monofosfato/química , Conformação Molecular , Canal de Liberação de Cálcio do Receptor de Rianodina/química , Canal de Liberação de Cálcio do Receptor de Rianodina/metabolismo , Selênio/química , Estereoisomerismo , Enxofre/química
17.
J Am Chem Soc ; 133(21): 8059-61, 2011 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-21545145

RESUMO

Standard molecular mechanics (MM) force fields predict a nearly linear decrease in hydration free energy with each successive addition of a methyl group to ammonia or acetamide, whereas a nonadditive relationship is observed experimentally. In contrast, the non-additive hydration behavior is reproduced directly using a quantum mechanics (QM)/MM-based free-energy perturbation (FEP) method wherein the solute partial atomic charges are updated at every window. Decomposing the free energies into electrostatic and van der Waals contributions and comparing the results with the corresponding free energies obtained using a conventional FEP method and a QM/MM method wherein the charges are not updated suggests that inaccuracies in the electrostatic free energies are the primary reason for the inability of the conventional FEP method to predict the experimental findings. The QM/MM-based FEP method was subsequently used to evaluate inhibitors of the diabetes drug target fructose-1,6-bisphosphatase adenosine 5'-monophosphate and 6-methylamino purine riboside 5'-monophosphate. The predicted relative binding free energy was consistent with the experimental findings, whereas the relative binding free energy predicted using the conventional FEP method differed from the experimental finding by an amount consistent with the overestimated relative solvation free energies calculated for alkylamines. Accordingly, the QM/MM-based FEP method offers potential advantages over conventional FEP methods, including greater accuracy and reduced user input. Moreover, since drug candidates often contain either functionality that is inadequately treated by MM (e.g., simple alkylamines and alkylamides) or new molecular scaffolds that require time-consuming development of MM parameters, these advantages could enable future automation of FEP calculations as well as greatly increase the use and impact of FEP calculations in drug discovery.


Assuntos
Acetamidas/química , Diabetes Mellitus Tipo 2/tratamento farmacológico , Inibidores Enzimáticos/uso terapêutico , Frutose-Bifosfatase/antagonistas & inibidores , Metilaminas/química , Monofosfato de Adenosina/química , Simulação por Computador , Humanos , Inosina Monofosfato/análogos & derivados , Inosina Monofosfato/química , Simulação de Dinâmica Molecular , Teoria Quântica , Termodinâmica
18.
Org Biomol Chem ; 8(20): 4705-15, 2010 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-20740240

RESUMO

A convenient trifluoromethylation method was firstly applied to the synthesis of 8- CF(3)-purine nucleosides. On the basis of this method, new protection and deprotection strategies were developed for the successful synthesis of the trifluoromethylated cyclic-ADP-ribose mimic, 8-CF(3)-cIDPRE 1. Using intact, fura-2-loaded Jurkat T cells compound 1 and 2',3'-O-isopropylidene 8-CF(3)-cIDPRE 14 were characterized as membrane-permeant cADPR agonists. Contrary to the 8-substituted cADPR analogues that mainly act as antagonists of cADPR in cells, 8-substituted cIDPRE derivatives were shown to be Ca(2+) mobilizing agonists. Here we report that even compound 1, the 8-substituted cIDPRE with the strong electron withdrawing CF(3) group, behaves as an agonist in T cells. Interestingly, also the partially protected 2',3'-O-isopropylidene 8-CF(3)-cIDPRE activated Ca(2+) signaling indicating only a minor role for the hydroxyl groups of the southern ribose of cADPR for its biological activity. To our knowledge 8-CF(3)-cIDPRE 1 is the first reported fluoro substituted cADPR mimic and 8-CF(3)-cIDPRE 1 and compound 14 are promising molecular probes for elucidating the mode of action of cADPR.


Assuntos
Cálcio/metabolismo , ADP-Ribose Cíclica/análogos & derivados , Linfócitos T/metabolismo , Adenosina Difosfato Ribose/química , ADP-Ribose Cíclica/síntese química , ADP-Ribose Cíclica/química , Humanos , Inosina Monofosfato/análogos & derivados , Inosina Monofosfato/química , Relação Estrutura-Atividade
19.
J Biomol Struct Dyn ; 26(4): 497-507, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19108589

RESUMO

The IMPDH (Inosine monophosphate dehydrogenase)-II is largely produced in cancer cells. Extensive MD-simulation (2 ns) of the 1B3O, 1NFB, 1NF7, 1LRT, and 1MEW PDB-structures revealed the presence of a conserved water molecule, which is H-bonded and stabilized by the surrounding ribose hydroxyl (O2) of inhibitor, nitrogen (NN) of cofactor, carboxyl oxygen (OD2) and amide nitrogen atoms of the active site Asp 364 and Asn 303 of human. These water-mediated interaction are partially supported in the solvated and X-ray structures. The stereochemistry of the four- centered H-bonds around the conserved water center may be exploited to design a better model inhibitor for IMPDH-II.


Assuntos
Asparagina/química , Ácido Aspártico/química , IMP Desidrogenase/química , NAD/química , Água/química , Domínio Catalítico , Cristalografia por Raios X , Inibidores Enzimáticos/química , Estabilidade Enzimática , Humanos , Ligação de Hidrogênio , Inosina Monofosfato/química , Ligantes , Termodinâmica
20.
Med Hypotheses ; 71(5): 657-63, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18710792

RESUMO

The genetic deficiency of hypoxanthine-guanine phosphoribosyltransferase (HPRT), located on the X chromosome, causes a severe neurological disorder in man, known as Lesch-Nyhan disease (LND). The enzyme HPRT is part of the savage pathway of purine biosynthesis and catalyzes the conversion of hypoxanthine and guanine to their respective nucleotides, IMP and GMP. HPRT deficiency is associated with a relatively selective dysfunction of brain dopamine systems. Several metabolites that accumulate in the patients (phosphoribosylpyrophosphate (PRPP), hypoxanthine, guanine, xanthine, and Z-nucleotides) have been proposed as toxic agents in LND. Some authors have pointed that Z-riboside, derived from the accumulation of ZMP, could be the toxic metabolite in LND. However, the available experimental data support a better hypothesis. I suggest that ZMP (and not Z-riboside) is the key toxic metabolite in LND. ZMP is an inhibitor of the bifunctional enzyme adenylosuccinate lyase, and a deficiency of this enzyme causes psychomotor and mental retardation in humans. Moreover, it has been reported that ZMP inhibits mitochondrial oxidative phosphorylation and induces apoptosis in certain cell types. ZMP is also an activator of the AMP-activated protein kinase (AMPK), a homeostatic regulator of energy levels in the cell. The AMPK has been implicated in the regulation of cell viability, catecholamine biosynthesis and cell structure. I propose that accumulation of ZMP will induce a pleiotropic effect in the brain by (1) a direct inhibition of mitochondrial respiration and the bifunctional enzyme adenylosuccinate lyase, and (2) a sustained activation of the AMPK which in turns would reduce cell viability, decrease dopamine synthesis, and alters cell morphology. In addition, a mechanism to explain the accumulation of ZMP in LND is presented. The knowledge of the toxic metabolite, and the way it acts, would help to design a better therapy.


Assuntos
Aminoimidazol Carboxamida/análogos & derivados , Síndrome de Lesch-Nyhan/etiologia , Ribonucleotídeos/toxicidade , Aminoimidazol Carboxamida/química , Aminoimidazol Carboxamida/toxicidade , Linhagem Celular Tumoral , Humanos , Hipoxantina Fosforribosiltransferase/metabolismo , Inosina Monofosfato/química , Síndrome de Lesch-Nyhan/metabolismo , Modelos Biológicos , Modelos Químicos , Modelos Teóricos , Fosforilação Oxidativa , Purinas/química , Ribonucleosídeos/química , Ribonucleotídeos/química
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