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1.
Molecules ; 26(15)2021 Jul 24.
Artigo em Inglês | MEDLINE | ID: mdl-34361630

RESUMO

In this study, we aimed to investigate the chemical components and biological activities of Musella lasiocarpa, a special flower that is edible and has functional properties. The crude methanol extract and its four fractions (petroleum ether, ethyl acetate, n-butanol, and aqueous fractions) were tested for their total antioxidant capacity, followed by their α-glucosidase, acetylcholinesterase, and xanthine oxidase inhibitory activities. Among the samples, the highest total phenolic and total flavonoid contents were found in the ethyl acetate (EtOAc) fraction (224.99 mg GAE/g DE) and crude methanol extract (187.81 mg QE/g DE), respectively. The EtOAc fraction of Musella lasiocarpa exhibited the strongest DPPH· scavenging ability, ABTS·+ scavenging ability, and α-glucosidase inhibitory activity with the IC50 values of 22.17, 12.10, and 125.66 µg/mL, respectively. The EtOAc fraction also showed the strongest ferric reducing antioxidant power (1513.89 mg FeSO4/g DE) and oxygen radical absorbance capacity ability (524.11 mg Trolox/g DE), which were higher than those of the control BHT. In contrast, the aqueous fraction demonstrated the highest acetylcholinesterase inhibitory activity (IC50 = 10.11 µg/mL), and the best xanthine oxidase inhibitory ability (IC50 = 5.23 µg/mL) was observed from the crude methanol extract as compared with allopurinol (24.85 µg/mL). The HPLC-MS/MS and GC-MS analyses further revealed an impressive arsenal of compounds, including phenolic acids, fatty acids, esters, terpenoids, and flavonoids, in the most biologically active EtOAc fraction. Taken together, this is the first report indicating the potential of Musella lasiocarpa as an excellent natural source of antioxidants with possible therapeutic, nutraceutical, and functional food applications.


Assuntos
Antioxidantes/química , Flavonoides/química , Magnoliopsida , Fenóis/química , Compostos Fitoquímicos/análise , Extratos Vegetais/química , Magnoliopsida/química , Magnoliopsida/enzimologia
2.
Int J Mol Sci ; 21(17)2020 Aug 24.
Artigo em Inglês | MEDLINE | ID: mdl-32847126

RESUMO

We characterized an Na+ transporter SvHKT1;1 from a halophytic turf grass, Sporobolus virginicus. SvHKT1;1 mediated inward and outward Na+ transport in Xenopus laevis oocytes and did not complement K+ transporter-defective mutant yeast. SvHKT1;1 did not complement athkt1;1 mutant Arabidopsis, suggesting its distinguishable function from other typical HKT1 transporters. The transcript was abundant in the shoots compared with the roots in S. virginicus and was upregulated by severe salt stress (500 mM NaCl), but not by lower stress. SvHKT1;1-expressing Arabidopsis lines showed higher shoot Na+ concentrations and lower salt tolerance than wild type (WT) plants under nonstress and salt stress conditions and showed higher Na+ uptake rate in roots at the early stage of salt treatment. These results suggested that constitutive expression of SvHKT1;1 enhanced Na+ uptake in root epidermal cells, followed by increased Na+ transport to shoots, which led to reduced salt tolerance. However, Na+ concentrations in phloem sap of the SvHKT1;1 lines were higher than those in WT plants under salt stress. Based on this result, together with the induction of the SvHKT1;1 transcription under high salinity stress, it was suggested that SvHKT1;1 plays a role in preventing excess shoot Na+ accumulation in S. virginicus.


Assuntos
Magnoliopsida , Brotos de Planta/metabolismo , ATPase Trocadora de Sódio-Potássio/genética , Sódio/metabolismo , Sódio/farmacologia , Arabidopsis/genética , Regulação Enzimológica da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Magnoliopsida/enzimologia , Magnoliopsida/genética , Magnoliopsida/metabolismo , Brotos de Planta/genética , Plantas Geneticamente Modificadas , Poaceae/enzimologia , Poaceae/genética , Poaceae/metabolismo , Estresse Salino/genética , Tolerância ao Sal , Plantas Tolerantes a Sal/genética , Plantas Tolerantes a Sal/metabolismo , ATPase Trocadora de Sódio-Potássio/metabolismo , Regulação para Cima/efeitos dos fármacos , Regulação para Cima/genética
3.
ACS Chem Biol ; 15(7): 1780-1787, 2020 07 17.
Artigo em Inglês | MEDLINE | ID: mdl-32501002

RESUMO

Iridoids are plant-derived terpenoids with a rich array of bioactivities. The key step in iridoid skeleton formation is the reduction of 8-oxogeranial by certain members of the progesterone 5ß-reductase/iridoid synthase (PRISE) family of short-chain alcohol dehydrogenases. Other members of the PRISE family have previously been implicated in the biosynthesis of the triterpenoid class of cardenolides, which requires the reduction of progesterone. Here, we explore the occurrence and activity of PRISE across major lineages of plants. We observed trace activities toward either 8-oxogeranial or progesterone in all PRISEs, including those from nonseed plants and green algae. Phylogenetic analysis, coupled with enzymatic assays, show that these activities appear to have become specialized in specific angiosperm lineages. This broad analysis of the PRISE family provides insight into how these enzymes evolved in plants and also suggests that iridoid synthase activity is an ancestral trait in all land plants, which might have contributed to the rise of iridoid metabolites.


Assuntos
Cycadopsida/enzimologia , Magnoliopsida/enzimologia , Progesterona Redutase/metabolismo , Monoterpenos Acíclicos/metabolismo , Ensaios Enzimáticos , Filogenia , Progesterona/metabolismo , Progesterona Redutase/genética
4.
J Plant Res ; 133(2): 205-215, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32048093

RESUMO

Rubisco specificity factor (Sc/o), a measure of the relative capacities of an enzyme to catalyze carboxylation and oxygenation of ribulose-1,5-bisphosphate, determines the extent of photosynthetic CO2 assimilation and photorespiratory CO2 release. The current model of C3 photosynthesis, the Farquhar-von Caemmerer-Berry (FvCB) model, requires a species-specific Sc/o. However, Sc/o values have never been reported in conifers, likely because in vitro kinetic analysis of conifer Rubisco presents difficulties. To estimate the Sc/o of conifers and compare it with angiosperm Sc/o, we measured changes in leaf CO2 compensation points (Γ) in response to O2 partial pressure for a variety of leaves, with different rates of day respiration (Rday) and maximum Rubisco carboxylation (Vcmax) in gymnosperms (Ginkgo biloba), conifers (Metasequoia glyptostroboides and Cryptomeria japonica), and angiosperms (Nicotiana tabacum and Phaseolus vulgaris). As predicted by the FvCB model, the slope of a linear function of Γ vs O2 partial pressure, d, increased alongside increasing Rday/Vcmax. The Sc/o was obtainable from this relationship between d and Rday/Vcmax, because the d values at Rday/Vcmax = 0 corresponded to α/Sc/o, where α was the photorespiratory CO2 release rate per Rubisco oxygenation rate (generally assumed to be 0.5). The calculated Sc/o values of N. tabacum and P. vulgaris exhibited good agreement with those reported by in vitro studies. The Sc/o values of both conifers were similar to those of the two angiosperm species. In contrast, the Sc/o value of G. biloba was significantly lower than those of the other four studied species. These results suggest that our new method for Sc/o estimation is applicable to C3 plants, including those for which in vitro kinetic analysis is difficult. Furthermore, results also suggest that conifer Sc/o does not differ significantly from that of C3 angiosperms, assuming α remains unchanged.


Assuntos
Dióxido de Carbono/fisiologia , Cycadopsida/enzimologia , Magnoliopsida/enzimologia , Oxigênio/fisiologia , Ribulose-Bifosfato Carboxilase/fisiologia , Traqueófitas/enzimologia , Cinética , Fotossíntese , Folhas de Planta
5.
BMC Genomics ; 21(1): 49, 2020 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-31941462

RESUMO

BACKGROUND: Clinopodium gracile (Benth.) Matsum (C. gracile) is an annual herb with pharmacological properties effective in the treatment of various diseases, including hepatic carcinoma. Triterpenoid saponins are crucial bioactive compounds in C. gracile. However, the molecular understanding of the triterpenoid saponin biosynthesis pathway remains unclear. RESULTS: In this study, we performed RNA sequencing (RNA-Seq) analysis of the flowers, leaves, roots, and stems of C. gracile plants using the BGISEQ-500 platform. The assembly of transcripts from all four types of tissues generated 128,856 unigenes, of which 99,020 were mapped to several public databases for functional annotation. Differentially expressed genes (DEGs) were identified via the comparison of gene expression levels between leaves and other tissues (flowers, roots, and stems). Multiple genes encoding pivotal enzymes, such as squalene synthase (SS), or transcription factors (TFs) related to triterpenoid saponin biosynthesis were identified and further analyzed. The expression levels of unigenes encoding important enzymes were verified by quantitative real-time PCR (qRT-PCR). Different chemical constituents of triterpenoid saponins were identified by Ultra-Performance Liquid Chromatography coupled with quadrupole time-of-flight mass spectrometry (UPLC/Q-TOF-MS). CONCLUSIONS: Our results greatly extend the public transcriptome dataset of C. gracile and provide valuable information for the identification of candidate genes involved in the biosynthesis of triterpenoid saponins and other important secondary metabolites.


Assuntos
Magnoliopsida/genética , Saponinas/biossíntese , Transcriptoma , Triterpenos/metabolismo , Vias Biossintéticas/genética , Farnesil-Difosfato Farnesiltransferase/química , Magnoliopsida/enzimologia , Magnoliopsida/metabolismo , RNA-Seq , Reação em Cadeia da Polimerase em Tempo Real , Saponinas/química , Metabolismo Secundário/genética , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Triterpenos/química
6.
Plant Physiol ; 177(3): 1124-1141, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29780036

RESUMO

Cell walls are crucial for the integrity and function of all land plants and are of central importance in human health, livestock production, and as a source of renewable bioenergy. Many enzymes that mediate the biosynthesis of cell wall polysaccharides are encoded by members of the large cellulose synthase (CesA) gene superfamily. Here, we analyzed 29 sequenced genomes and 17 transcriptomes to revise the phylogeny of the CesA gene superfamily in angiosperms. Our results identify ancestral gene clusters that predate the monocot-eudicot divergence and reveal several novel evolutionary observations, including the expansion of the Poaceae-specific cellulose synthase-like CslF family to the graminids and restiids and the characterization of a previously unreported eudicot lineage, CslM, that forms a reciprocally monophyletic eudicot-monocot grouping with the CslJ clade. The CslM lineage is widely distributed in eudicots, and the CslJ clade, which was thought previously to be restricted to the Poales, is widely distributed in monocots. Our analyses show that some members of the CslJ lineage, but not the newly identified CslM genes, are capable of directing (1,3;1,4)-ß-glucan biosynthesis, which, contrary to current dogma, is not restricted to Poaceae.


Assuntos
Parede Celular/metabolismo , Glucosiltransferases/genética , Filogenia , Proteínas de Plantas/genética , Evolução Molecular , Glucosiltransferases/metabolismo , Magnoliopsida/enzimologia , Magnoliopsida/genética , Família Multigênica , Proteínas de Plantas/metabolismo , Plantas Geneticamente Modificadas , Poaceae/enzimologia , Poaceae/genética , Nicotiana/genética , Nicotiana/metabolismo , beta-Glucanas/metabolismo
7.
Phytochemistry ; 140: 151-165, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-28500928

RESUMO

The native Putranjiva roxburghii family 1 glycoside hydrolase enzyme showed ß-D-fucosidase activity in addition to ß-D-glucosidase and ß-D-galactosidase activities reported in our previous study. A single step concanvalin A affinity chromatography for native PRGH1 improved the yield and reduced the purification time. The PRGH1 gene was cloned and overexpressed in E. coli. The full length gene contained an ORF of 1617 bp encoding a polypeptide of 538 amino acids. The amino acid sequence of PRGH1 showed maximum similarities to ß-glucosidases and myrosinases. Both native and recombinant protein showed maximum hydrolytic activity for pNP-Fuc followed by pNP-Glc and pNP-Gal. Significant enzyme activity was also observed for cellobiose, however it decreased with increase in chain-length for glycan substrates. The enzyme showed significant resistant to D-glucose concentration up to 500 mM. Mutational studies confirmed the predicted catalytic acid/base Glu173 and nucleophile Glu389 as key residues for its activity. Moreover, Glu446 and Asn172 played essential role in substrate binding by interacting with the -1 subsite of substrates. Bioinformatic analysis suggested the possible reasons for the broad substrate specificity and other properties of the enzyme. PRGH1 had high sequence similarity towards S-glucosidase and may be involved in defence. The broad specificity, catalytic efficiency and thermostability make PRGH1 potentially an important industrial enzyme.


Assuntos
Celobiose/metabolismo , Magnoliopsida/enzimologia , beta-Glucosidase/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , Simulação de Acoplamento Molecular , Estrutura Secundária de Proteína , Especificidade por Substrato , beta-Glucosidase/genética
8.
Acta Crystallogr F Struct Biol Commun ; 72(Pt 1): 24-8, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26750480

RESUMO

Nepenthesins are aspartic proteases secreted by carnivorous pitcher plants of the genus Nepenthes. They significantly differ in sequence from other plant aspartic proteases. This difference, which provides more cysteine residues in the structure of nepenthesins, may contribute to their unique stability profile. Recombinantly produced nepenthesin 1 (rNep1) from N. gracilis in complex with pepstatin A was crystallized under two different crystallization conditions using a newly formulated low-pH crystallization screen. The diffraction data were processed to 2.9 and 2.8 Šresolution, respectively. The crystals belonged to space group P212121, with unit-cell parameters a = 86.63, b = 95.90, c = 105.40 Å, α = ß = γ = 90° and a = 86.28, b = 97.22, c = 103.78 Å, α = ß = γ = 90°, respectively. Matthews coefficient and solvent-content calculations suggest the presence of two molecules of rNep1 in the asymmetric unit. Here, the details of the crystallization experiment and analysis of the X-ray data are reported.


Assuntos
Ácido Aspártico Endopeptidases/química , Proteínas de Plantas/química , Cristalização , Cristalografia por Raios X , Concentração de Íons de Hidrogênio , Magnoliopsida/enzimologia , Pepstatinas/química
9.
Biomed Res Int ; 2014: 583606, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25276800

RESUMO

ADP-glucose pyrophosphorylase (AGPase) is the first rate limiting enzyme of starch biosynthesis pathway and has been exploited as the target for greater starch yield in several plants. The structure-function analysis and substrate binding specificity of AGPase have provided enormous potential for understanding the role of specific amino acid or motifs responsible for allosteric regulation and catalytic mechanisms, which facilitate the engineering of AGPases. We report the three-dimensional structure, substrate, and inhibitor binding specificity of AGPase small subunit from different monocot and dicot crop plants. Both monocot and dicot subunits were found to exploit similar interactions with the substrate and inhibitor molecule as in the case of their closest homologue potato tuber AGPase small subunit. Comparative sequence and structural analysis followed by molecular docking and electrostatic surface potential analysis reveal that rearrangements of secondary structure elements, substrate, and inhibitor binding residues are strongly conserved and follow common folding pattern and orientation within monocot and dicot displaying a similar mode of allosteric regulation and catalytic mechanism. The results from this study along with site-directed mutagenesis complemented by molecular dynamics simulation will shed more light on increasing the starch content of crop plants to ensure the food security worldwide.


Assuntos
Inibidores Enzimáticos/farmacologia , Glucose-1-Fosfato Adenililtransferase/antagonistas & inibidores , Glucose-1-Fosfato Adenililtransferase/química , Magnoliopsida/enzimologia , Poaceae/enzimologia , Subunidades Proteicas/antagonistas & inibidores , Subunidades Proteicas/química , Sequência de Aminoácidos , Simulação de Acoplamento Molecular , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Alinhamento de Sequência , Análise de Sequência de Proteína , Eletricidade Estática , Homologia Estrutural de Proteína , Especificidade por Substrato/efeitos dos fármacos
10.
Mol Biol Evol ; 31(10): 2624-36, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25015644

RESUMO

Allopolyploidization in plants entails the merger of two divergent nuclear genomes, typically with only one set (usually maternal) of parental plastidial and mitochondrial genomes and with an altered cytonuclear stoichiometry. Thus, we might expect cytonuclear coevolution to be an important dimension of allopolyploid evolution. Here, we investigate cytonuclear coordination for the key chloroplast protein rubisco (ribulose 1,5-bisphosphate carboxylase/oxygenase), which is composed of nuclear-encoded, small subunits (SSUs) and plastid-encoded, large subunits. By studying gene composition and diversity as well as gene expression in four model allopolyploid lineages, Arabidopsis, Arachis, Brassica, and Nicotiana, we demonstrate that paralogous nuclear-encoded rbcS genes within diploids are subject to homogenization via gene conversion and that such concerted evolution via gene conversion characterizes duplicated genes (homoeologs) at the polyploid level. Many gene conversions in the polyploids are intergenomic with respect to the diploid progenitor genomes, occur in functional domains of the homoeologous SSUs, and are directionally biased, such that the maternal amino acid states are favored. This consistent preferential maternal-to-paternal gene conversion is mirrored at the transcriptional level, with a uniform transcriptional bias of the maternal-like rbcS homoeologs. These data, repeated among multiple diverse angiosperm genera for an important photosynthetic enzyme, suggest that cytonuclear coevolution may be mediated by intergenomic gene conversion and altered transcription of duplicated, now homoeologous nuclear genes.


Assuntos
Membrana Celular/genética , Núcleo Celular/genética , Genes de Plantas , Magnoliopsida/enzimologia , Ribulose-Bifosfato Carboxilase/genética , Arabidopsis/enzimologia , Arabidopsis/genética , Arachis/enzimologia , Arachis/genética , Brassica/enzimologia , Brassica/genética , Membrana Celular/metabolismo , Núcleo Celular/metabolismo , Evolução Molecular , Conversão Gênica , Dosagem de Genes , Regulação da Expressão Gênica de Plantas , Magnoliopsida/classificação , Magnoliopsida/genética , Filogenia , Poliploidia , Ribulose-Bifosfato Carboxilase/metabolismo , Nicotiana/enzimologia , Nicotiana/genética
11.
Environ Sci Pollut Res Int ; 21(17): 10108-19, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24788860

RESUMO

A surface- and vertical subsurface-flow-constructed wetland were designed to study the response of chlorophyll and antioxidant enzymes to elevated UV radiation in three types of wetland plants (Canna indica, Phragmites austrail, and Typha augustifolia). Results showed that (1) chlorophyll content of C. indica, P. austrail, and T. augustifolia in the constructed wetland was significantly lower where UV radiation was increased by 10 and 20 % above ambient solar level than in treatment with ambient solar UV radiation (p < 0.05). (2) The malondialdehyde (MDA) content, guaiacol peroxidase (POD), superoxide dismutase (SOD), and catalase (CAT) activities of wetland plants increased with elevated UV radiation intensity. (3) The increased rate of MDA, SOD, POD, and CAT activities of C. indica, P. australis, and T. angustifolia by elevated UV radiation of 10 % was higher in vertical subsurface-flow-constructed wetland than in surface-flow-constructed wetland. The sensitivity of MDA, SOD, POD, and CAT activities of C. indica, P. austrail, and T. augustifolia to the elevated UV radiation was lower in surface-flow-constructed wetland than in the vertical subsurface-flow-constructed wetland, which was related to a reduction in UV radiation intensity through the dissolved organic carbon and suspended matter in the water. C. indica had the highest SOD and POD activities, which implied it is more sensitive to enhanced UV radiation. Therefore, different wetland plants had different antioxidant enzymes by elevated UV radiation, which were more sensitive in vertical subsurface-flow-constructed wetland than in surface-flow-constructed wetland.


Assuntos
Antioxidantes/metabolismo , Clorofila/efeitos da radiação , Magnoliopsida/efeitos da radiação , Áreas Alagadas , Catalase/metabolismo , Magnoliopsida/enzimologia , Malondialdeído/metabolismo , Peroxidase/metabolismo , Poaceae/enzimologia , Poaceae/efeitos da radiação , Superóxido Dismutase/metabolismo , Typhaceae/enzimologia , Typhaceae/efeitos da radiação , Raios Ultravioleta
12.
Protein Expr Purif ; 95: 121-8, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24365662

RESUMO

Carnivorous plants of the genus Nepenthes produce their own aspartic proteases, nepenthesins, to digest prey trapped in their pitchers. Nepenthesins differ significantly in sequence from other aspartic proteases in the animal or even plant kingdoms. This difference, which also brings more cysteine residues into the structure of these proteases, can be a cause of uniquely high temperature and pH stabilities of nepenthesins. Their detailed structure characterization, however, has not previously been possible due to low amounts of protease present in the pitcher fluid and also due to limited accessibility of Nepenthes plants. In the present study we describe a convenient way for obtaining high amounts of nepenthesin-1 from Nepenthes gracilis using heterologous production in Escherichia coli. The protein can be easily refolded in vitro and its characteristics are very close to those described for a natural enzyme isolated from the pitcher fluid. Similarly to the natural enzyme, recombinant nepenthesin-1 is sensitive to denaturing and reducing agents. It also has maximal activity around pH 2.5, shows unusual stability at high pH and its activity is not irreversibly inhibited even after prolonged incubation in the basic pH range. On the other hand, temperature stability of the recombinant enzyme is lower in comparison with the natural enzyme, which can be attributed to missing N-glycosylation in the recombinant protein.


Assuntos
Ácido Aspártico Proteases/química , Magnoliopsida/enzimologia , Proteínas de Plantas/química , Proteínas Recombinantes/química , Ácido Aspártico Proteases/genética , Ácido Aspártico Proteases/metabolismo , Carnivoridade , Dissulfetos , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Magnoliopsida/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Substâncias Redutoras , Temperatura
13.
PLoS One ; 8(8): e72729, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23951330

RESUMO

RING finger E3 ligases are components of the ubiquitin proteasome system (UPS) that mediate the transfer of ubiquitin to substrates. Single-subunit RING finger E3s binds the E2 ubiquitin-conjugating enzyme and contains recognition sequences for the substrate within the same polypeptide. Here we describe the characterization of a class of RING finger E3 ligases that is conserved among eukaryotes. This class encodes a RING-H2 domain related in sequence to the ATL RING-H2 domain, another class of E3 ligases, and a C2/C2 zing finger at the amino-terminus, formerly described as BZF. In viridiplantae (green algae and land plants), we designed this family as BTL for BZF ATLs. BTLs are putative orthologs of the mammalian Rabring7/BCA2 RING-H2 E3s that have expanded in angiosperms. They are found in numbers ranging from three to thirty-one, which is in contrast to the one to three members normally found in animals, fungi, and protists. Furthermore, the number of sequence LOGOs generated in angiosperms is four times greater than that in other eukaryotes. In contrast to ATLs, which show expansion by tandem duplication, tandemly duplicated BTLs are scarce. The mode of action of Rabring7/BCA2 and BTLs may be similar since both the Rabring7/BCA2 BZF and the ath|BTL4 BZF are likely to mediate the binding of ubiquitin. This study introduces valuable information on the evolution and domain structure of the Rabring7/BCA2/BTL class of E3 ligases which may be important for core eukaryotic genes.


Assuntos
Magnoliopsida/enzimologia , Domínios RING Finger , Ubiquitina-Proteína Ligases/química , Sequência de Aminoácidos , Animais , Genes de Plantas , Magnoliopsida/química , Magnoliopsida/genética , Magnoliopsida/metabolismo , Dados de Sequência Molecular , Filogenia , Alinhamento de Sequência , Ubiquitina-Proteína Ligases/genética , Ubiquitina-Proteína Ligases/metabolismo
15.
PLoS One ; 8(5): e62619, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23671614

RESUMO

Ervatamins (A, B and C) are papain-like cysteine proteases from the plant Ervatamia coronaria. Among Ervatamins, Ervatamin-C is a thermostable protease, but it shows lower catalytic efficiency. In contrast, Ervatamin-A which has a high amino acid sequence identity (∼90%) and structural homology (Cα rmsd 0.4 Å) with Ervatamin-C, has much higher catalytic efficiency (∼57 times). From the structural comparison of Ervatamin-A and -C, two residues Thr32 and Tyr67 in the catalytic cleft of Ervatamin-A have been identified whose contributions for higher activity of Ervatamin-A are established in our earlier studies. In this study, these two residues have been introduced in Ervatamin-C by site directed mutagenesis to enhance the catalytic efficiency of the thermostable protease. Two single mutants (S32T and A67Y) and one double mutant (S32T/A67Y) of Ervatamin-C have been generated and characterized. All the three mutants show ∼ 8 times higher catalytic efficiency (k cat/K m) than the wild-type. The thermostability of all the three mutant enzymes remained unchanged. The double mutant does not achieve the catalytic efficiency of the template enzyme Ervatamin-A. By modeling the structure of the double mutant and probing the role of active site residues by docking a substrate, the mechanistic insights of higher activity of the mutant protease have been addressed. The in-silico study demonstrates that the residues beyond the catalytic cleft also influence the substrate binding and positioning of the substrate at the catalytic centre, thus controlling the catalytic efficiency of an enzyme.


Assuntos
Papaína/genética , Proteínas de Plantas/genética , Sequência de Aminoácidos , Substituição de Aminoácidos , Domínio Catalítico , Cisteína Endopeptidases/química , Cisteína Endopeptidases/genética , Inibidores de Cisteína Proteinase/química , Ativação Enzimática , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Cinética , Leucina/análogos & derivados , Leucina/química , Magnoliopsida/enzimologia , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Papaína/química , Proteínas de Plantas/química , Ligação Proteica , Engenharia de Proteínas , Proteólise , Homologia Estrutural de Proteína
16.
Plant Physiol ; 161(4): 1918-29, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23435694

RESUMO

Eukaryotic cells originated when an ancestor of the nucleated cell engulfed bacterial endosymbionts that gradually evolved into the mitochondrion and the chloroplast. Soon after these endosymbiotic events, thousands of ancestral prokaryotic genes were functionally transferred from the endosymbionts to the nucleus. This process of functional gene relocation, now rare in eukaryotes, continues in angiosperms. In this article, we show that the chloroplastic acetyl-CoA carboxylase subunit (accD) gene that is present in the plastome of most angiosperms has been functionally relocated to the nucleus in the Campanulaceae. Surprisingly, the nucleus-encoded accD transcript is considerably smaller than the plastidic version, consisting of little more than the carboxylase domain of the plastidic accD gene fused to a coding region encoding a plastid targeting peptide. We verified experimentally the presence of a chloroplastic transit peptide by showing that the product of the nuclear accD fused to green fluorescent protein was imported in the chloroplasts. The nuclear gene regulatory elements that enabled the erstwhile plastidic gene to become functional in the nuclear genome were identified, and the evolution of the intronic and exonic sequences in the nucleus is described. Relocation and truncation of the accD gene is a remarkable example of the processes underpinning endosymbiotic evolution.


Assuntos
Acetil-CoA Carboxilase/genética , Núcleo Celular/genética , Transferência Genética Horizontal/genética , Magnoliopsida/enzimologia , Magnoliopsida/genética , Plastídeos/genética , Subunidades Proteicas/genética , Acetil-CoA Carboxilase/química , Acetil-CoA Carboxilase/metabolismo , Sequência de Aminoácidos , Campanulaceae/enzimologia , Campanulaceae/genética , Genes de Plantas/genética , Íntrons/genética , Dados de Sequência Molecular , Subunidades Proteicas/química , Subunidades Proteicas/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Sequências Reguladoras de Ácido Nucleico/genética , Alinhamento de Sequência
17.
Plant Physiol ; 161(1): 72-80, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23166353

RESUMO

Jojoba (Simmondsia chinensis) is the only plant species known to use liquid wax esters (WEs) as a primary seed storage reserve. Upon germination, WE hydrolysis releases very-long-chain fatty alcohols, which must be oxidized to fatty acids by the sequential action of a fatty alcohol oxidase (FAO) and a fatty aldehyde dehydrogenase (FADH) before they can be ß-oxidized. Here, we describe the cloning and characterization of genes for each of these two activities. Jojoba FAO and FADH are 52% and 68% identical to Arabidopsis (Arabidopsis thaliana) FAO3 and ALDH3H1, respectively. The genes are expressed most strongly in the cotyledons of jojoba seedlings following germination, but transcripts can also be detected in vegetative tissues. Proteomic analysis indicated that the FAO and FADH proteins can be detected on wax bodies, but they localized to the endoplasmic reticulum when they were expressed as amino-terminal green fluorescent protein fusions in tobacco (Nicotiana tabacum) leaves. Recombinant jojoba FAO and FADH proteins are active on very-long-chain fatty alcohol and fatty aldehyde substrates, respectively, and have biochemical properties consistent with those previously reported in jojoba cotyledons. Coexpression of jojoba FAO and FADH in Arabidopsis enhanced the in vivo rate of fatty alcohol oxidation more than 4-fold. Taken together, our data suggest that jojoba FAO and FADH constitute the very-long-chain fatty alcohol oxidation pathway that is likely to be necessary for efficient WE mobilization following seed germination.


Assuntos
Álcoois Graxos/metabolismo , Germinação , Sementes/metabolismo , Ceras/metabolismo , Oxirredutases do Álcool/genética , Oxirredutases do Álcool/metabolismo , Aldeído Oxirredutases/metabolismo , Arabidopsis/enzimologia , Arabidopsis/genética , Clonagem Molecular , Cotilédone/genética , Cotilédone/metabolismo , Retículo Endoplasmático/metabolismo , Ativação Enzimática , Ésteres/metabolismo , Regulação Enzimológica da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Genes de Plantas , Magnoliopsida/enzimologia , Magnoliopsida/genética , Oxirredução , Folhas de Planta/enzimologia , Folhas de Planta/genética , Plantas Geneticamente Modificadas/enzimologia , Plantas Geneticamente Modificadas/genética , Proteômica/métodos , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Sementes/genética , Nicotiana/enzimologia , Nicotiana/genética
18.
Plant Cell ; 24(7): 3040-59, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22829148

RESUMO

Despite the availability of thousands of transit peptide (TP) primary sequences, the structural and/or physicochemical properties that determine TP recognition by components of the chloroplast translocon are not well understood. By combining a series of in vitro and in vivo experiments, we reveal that TP recognition is determined by sequence-independent interactions and vectorial-specific recognition domains. Using both native and reversed TPs for two well-studied precursors, small subunit of ribulose-1,5-bis-phosphate carboxylase/oxygenase, and ferredoxin, we exposed these two modes of recognition. Toc34 receptor (34-kD subunit of the translocon of the outer envelope) recognition in vitro, preprotein binding in organellar, precursor binding in vivo, and the recognition of TPs by the major stromal molecular motor Hsp70 are specific for the physicochemical properties of the TP. However, translocation in organellar and in vivo demonstrates strong specificity to recognition domain organization. This organization specificity correlates with the N-terminal placement of a strong Hsp70 recognition element. These results are discussed in light of how individual translocon components sequentially interact with the precursor during binding and translocation and helps explain the apparent lack of sequence conservation in chloroplast TPs.


Assuntos
Magnoliopsida/metabolismo , Peptídeos/metabolismo , Plastídeos/metabolismo , Precursores de Proteínas/metabolismo , Ribulose-Bifosfato Carboxilase/metabolismo , Sequência de Aminoácidos , Proteínas de Transporte/metabolismo , Cloroplastos/metabolismo , Biologia Computacional , Ferredoxinas/química , Ferredoxinas/metabolismo , Hidrólise , Magnoliopsida/enzimologia , Modelos Moleculares , Dados de Sequência Molecular , Pisum sativum/enzimologia , Pisum sativum/metabolismo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Ligação Proteica , Estrutura Terciária de Proteína , Transporte Proteico , Proteínas Recombinantes de Fusão , Ribulose-Bifosfato Carboxilase/química , Alinhamento de Sequência , Nicotiana/enzimologia , Nicotiana/metabolismo
19.
J Exp Bot ; 63(12): 4615-29, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22791822

RESUMO

Among the C1A cysteine proteases, the plant cathepsin F-like group has been poorly studied. This paper describes the molecular and functional characterization of the HvPap-1 cathepsin F-like protein from barley. This peptidase is N-glycosylated and has to be processed to become active by its own propeptide being an important modulator of the peptidase activity. The expression pattern of its mRNA and protein suggest that it is involved in different proteolytic processes in the barley plant. HvPap-1 peptidase has been purified in Escherichia coli and the recombinant protein is able to degrade different substrates, including barley grain proteins (hordeins, albumins, and globulins) stored in the barley endosperm. It has been localized in protein bodies and vesicles of the embryo and it is induced in aleurones by gibberellin treatment. These three features support the implication of HvPap-1 in storage protein mobilization during grain germination. In addition, a complex regulation exerted by the barley cystatins, which are cysteine protease inhibitors, and by its own propeptide, is also described.


Assuntos
Catepsina F/metabolismo , Cistatinas/farmacologia , Inibidores de Cisteína Proteinase/farmacologia , Precursores Enzimáticos/metabolismo , Hordeum/enzimologia , Albuminas/metabolismo , Sequência de Aminoácidos , Transporte Biológico , Catepsina F/genética , Endosperma/efeitos dos fármacos , Endosperma/enzimologia , Endosperma/genética , Precursores Enzimáticos/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Germinação , Globulinas/metabolismo , Glutens/metabolismo , Glicosilação , Hordeum/efeitos dos fármacos , Hordeum/genética , Magnoliopsida/enzimologia , Magnoliopsida/genética , Modelos Moleculares , Dados de Sequência Molecular , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Proteólise , Proteínas Recombinantes , Fatores de Tempo
20.
Plant Cell Rep ; 31(9): 1687-99, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22614255

RESUMO

UNLABELLED: Phytochelatin synthase (PCS), the key enzyme involved in heavy metal detoxification and accumulation has been used from various sources to develop transgenic plants for the purpose of phytoremediation. However, some of the earlier studies provided contradictory results. Most of the PCS genes were isolated from plants that are not potential metal accumulators. In this study, we have isolated PCS gene from Ceratophyllum demersum cv. L. (CdPCS1), a submerged rootless aquatic macrophyte, which is considered as potential accumulator of heavy metals. The CdPCS1 cDNA of 1,757 bp encodes a polypeptide of 501 amino acid residues and differs from other known PCS with respect to the presence of a number of cysteine residues known for their interaction with heavy metals. Complementation of cad1-3 mutant of Arabidopsis deficient in PC (phytochelatin) biosynthesis by CdPCS1 suggests its role in the synthesis of PCs. Transgenic tobacco plants expressing CdPCS1 showed several-fold increased PC content and precursor non-protein thiols with enhanced accumulation of cadmium (Cd) and arsenic (As) without significant decrease in plant growth. We conclude that CdPCS1 encodes functional PCS and may be part of metal detoxification mechanism of the heavy metal accumulating plant C. demersum. KEY MESSAGE: Heterologous expression of PCS gene from C. demersum complements Arabidopsis cad1-3 mutant and leads to enhanced accumulation of Cd and As in transgenic tobacco.


Assuntos
Aminoaciltransferases/metabolismo , Organismos Aquáticos/enzimologia , Arsênio/metabolismo , Cádmio/metabolismo , Magnoliopsida/enzimologia , Nicotiana/genética , Nicotiana/metabolismo , Adaptação Fisiológica/efeitos dos fármacos , Sequência de Aminoácidos , Aminoaciltransferases/química , Aminoaciltransferases/genética , Organismos Aquáticos/efeitos dos fármacos , Arabidopsis/efeitos dos fármacos , Arabidopsis/metabolismo , Arsênio/toxicidade , Cádmio/toxicidade , Regulação Enzimológica da Expressão Gênica/efeitos dos fármacos , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Teste de Complementação Genética , Magnoliopsida/efeitos dos fármacos , Dados de Sequência Molecular , Mutação/genética , Peptídeos/metabolismo , Filogenia , Fitoquelatinas/metabolismo , Plantas Geneticamente Modificadas , Alinhamento de Sequência , Compostos de Sulfidrila/metabolismo , Nicotiana/efeitos dos fármacos , Nicotiana/crescimento & desenvolvimento
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