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1.
Mar Genomics ; 63: 100947, 2022 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-35568399

RESUMO

Streptomyces malaysiensis HNM0561 is a marine sponge-associated actinomycete with the potential to produce potential anti-androgens against prostate cancer cells, including malaymycin and mccrearamycin E. Here, we present the complete genome sequence of S. malaysiensis HNM0561, which consists of a linear chromosome of 11,656,895 bp and a circular plasmid of 32,797 bp, 9849 protein coding genes, 18 rRNA genes, 66 tRNA genes, and 191 sRNA genes. Genomic annotations revealed that 72.03% of the protein-coding genes were assigned to the COG database, among which the abundant genes were predicted to be involved in transcription, replication, carbohydrate transport and metabolism, and amino acid transport and metabolism. Forty-nine putative secondary metabolite biosynthetic gene clusters were found in the genome. Among them, the potential biosynthetic gene clusters of malaymycin and mccrearamycin E have been described respectively. The complete genome information presented here will enable us to investigate the biosynthetic mechanism of two novel structures of malaymycin and mccrearamycin E and to discover novel secondary metabolites with potential against prostate cancer cell activities.


Assuntos
Actinobacteria , Poríferos , Neoplasias da Próstata , Actinobacteria/genética , Animais , Genoma Bacteriano , Humanos , Masculino , Família Multigênica , Poríferos/genética , Neoplasias da Próstata/genética , Streptomyces
2.
Sci Rep ; 12(1): 1307, 2022 01 25.
Artigo em Inglês | MEDLINE | ID: mdl-35079031

RESUMO

Upon injury, the homeostatic balance that ensures tissue function is disrupted. Wound-induced signaling triggers the recovery of tissue integrity and offers a context to understand the molecular mechanisms for restoring tissue homeostasis upon disturbances. Marine sessile animals are particularly vulnerable to chronic wounds caused by grazers that can compromise prey's health. Yet, in comparison to other stressors like warming or acidification, we know little on how marine animals respond to grazing. Marine sponges (Phylum Porifera) are among the earliest-diverging animals and play key roles in the ecosystem; but they remain largely understudied. Here, we investigated the transcriptomic responses to injury caused by a specialist spongivorous opisthobranch (i.e., grazing treatment) or by clipping with a scalpel (i.e., mechanical damage treatment), in comparison to control sponges. We collected samples 3 h, 1 d, and 6 d post-treatment for differential gene expression analysis on RNA-seq data. Both grazing and mechanical damage activated a similar transcriptomic response, including a clotting-like cascade (e.g., with genes annotated as transglutaminases, metalloproteases, and integrins), calcium signaling, and Wnt and mitogen-activated protein kinase signaling pathways. Wound-induced gene expression signature in sponges resembles the initial steps of whole-body regeneration in other animals. Also, the set of genes responding to wounding in sponges included putative orthologs of cancer-related human genes. Further insights can be gained from taking sponge wound healing as an experimental system to understand how ancient genes and regulatory networks determine healthy animal tissues.


Assuntos
Neoplasias/genética , Poríferos/genética , Transdução de Sinais/genética , Transcriptoma/genética , Cicatrização/genética , Animais , Regulação para Baixo/genética , Ecossistema , Redes Reguladoras de Genes , Humanos , Modelos Animais , Filogenia , Poríferos/classificação , Mapas de Interação de Proteínas/genética , RNA-Seq/métodos , Regulação para Cima/genética
3.
Angew Chem Int Ed Engl ; 60(29): 15891-15898, 2021 07 12.
Artigo em Inglês | MEDLINE | ID: mdl-33961724

RESUMO

Although swarming motility and biofilms are opposed collective behaviors, both contribute to bacterial survival and host colonization. Pseudovibrio bacteria have attracted attention because they are part of the microbiome of healthy marine sponges. Two-thirds of Pseudovibrio genomes contain a member of a nonribosomal peptide synthetase-polyketide synthase gene cluster family, which is also found sporadically in Pseudomonas pathogens of insects and plants. After developing reverse genetics for Pseudovibrio, we isolated heptapeptides with an ureido linkage and related nonadepsipeptides we termed pseudovibriamides A and B, respectively. A combination of genetics and imaging mass spectrometry experiments showed heptapetides were excreted, promoting motility and reducing biofilm formation. In contrast to lipopeptides widely known to affect motility/biofilms, pseudovibriamides are not surfactants. Our results expand current knowledge on metabolites mediating bacterial collective behavior.


Assuntos
Peptídeos/metabolismo , Poríferos/genética , Poríferos/metabolismo , Animais , Família Multigênica/genética , Peptídeo Sintases/genética , Peptídeo Sintases/metabolismo , Policetídeo Sintases/genética , Policetídeo Sintases/metabolismo , Simbiose
4.
PLoS One ; 15(2): e0228722, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32084159

RESUMO

The ability to regulate oxygen consumption evolved in ancestral animals and is intrinsically linked to iron metabolism. The iron pathways have been intensively studied in mammals, whereas data on distant invertebrates are limited. Sea sponges represent the oldest animal phylum and have unique structural plasticity and capacity to reaggregate after complete dissociation. We studied iron metabolic factors and their expression during reaggregation in the White Sea cold-water sponges Halichondria panicea and Halisarca dujardini. De novo transcriptomes were assembled using RNA-Seq data, and evolutionary trends were analyzed with bioinformatic tools. Differential expression during reaggregation was studied for H. dujardini. Enzymes of the heme biosynthesis pathway and transport globins, neuroglobin (NGB) and androglobin (ADGB), were identified in sponges. The globins mutate at higher evolutionary rates than the heme synthesis enzymes. Highly conserved iron-regulatory protein 1 (IRP1) presumably interacts with the iron-responsive elements (IREs) found in mRNAs of ferritin (FTH1) and a putative transferrin receptor NAALAD2. The reaggregation process is accompanied by increased expression of IRP1, the antiapoptotic factor BCL2, the inflammation factor NFκB (p65), FTH1 and NGB, as well as by an increase in mitochondrial density. Our data indicate a complex mechanism of iron regulation in sponge structural plasticity and help to better understand general mechanisms of morphogenetic processes in multicellular species.


Assuntos
Ferro/metabolismo , Poríferos/metabolismo , Animais , Biologia Computacional , Perfilação da Expressão Gênica , Proteínas Reguladoras de Ferro/genética , Proteínas Reguladoras de Ferro/metabolismo , Anotação de Sequência Molecular , Filogenia , Poríferos/genética , RNA-Seq
5.
Curr Opin Genet Dev ; 57: 91-97, 2019 08.
Artigo em Inglês | MEDLINE | ID: mdl-31546193

RESUMO

Animal morphogenesis can be summarized as a reconfiguration of a mass of cells. Although extracellular matrices that include rigid skeletal elements, such as cartilage/bones and exoskeletons, have important roles in morphogenesis, they are also secreted in situ by accumulated cells or epithelial cells. In contrast, recent studies of the skeleton construction of sponges (Porifera) illuminate a conceptually different mechanism of morphogenesis in which cells manipulate rather fine rigid materials (spicules) to form larger structures. Here, two different types of sponge skeleton formation using calcareous spicules or siliceous spicules are compared with regard to the concept of the production of rigid materials and their use in skeletons. The comparison highlights the advantages of their different strategies of forming sponge skeletons.


Assuntos
Matriz Extracelular/genética , Morfogênese/genética , Poríferos/crescimento & desenvolvimento , Esqueleto/crescimento & desenvolvimento , Exoesqueleto/crescimento & desenvolvimento , Animais , Cartilagem/crescimento & desenvolvimento , Células Epiteliais/metabolismo , Poríferos/genética
6.
Mar Drugs ; 17(6)2019 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-31248066

RESUMO

Lectins display a variety of biological functions including insecticidal, antimicrobial, as well as antitumor activities. In this report, a gene encoding Aphrocallistes vastus lectin (AVL), a C-type lectin, was inserted into an oncolytic vaccinia virus vector (oncoVV) to form a recombinant virus oncoVV-AVL, which showed significant in vitro antiproliferative activity in a variety of cancer cell lines. Further investigations revealed that oncoVV-AVL replicated faster than oncoVV significantly in cancer cells. Intracellular signaling elements including NF-κB2, NIK, as well as ERK were determined to be altered by oncoVV-AVL. Virus replication upregulated by AVL was completely dependent on ERK activity. Furthermore, in vivo studies showed that oncoVV-AVL elicited significant antitumor effect in colorectal cancer and liver cancer mouse models. Our study might provide insights into a novel way of the utilization of marine lectin AVL in oncolytic viral therapies.


Assuntos
Antineoplásicos/farmacologia , Lectinas/genética , Lectinas/farmacologia , Vírus Oncolíticos/genética , Poríferos/genética , Vaccinia virus/genética , Animais , Linhagem Celular , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Neoplasias Colorretais/tratamento farmacológico , Feminino , Células HCT116 , Células HEK293 , Humanos , Neoplasias Hepáticas/tratamento farmacológico , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Nus , Terapia Viral Oncolítica/métodos , Transdução de Sinais/efeitos dos fármacos , Replicação Viral/genética , Ensaios Antitumorais Modelo de Xenoenxerto/métodos
7.
Biochimie ; 158: 126-129, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30597179

RESUMO

Previously we had discovered unusual enzymatic activity in the marine sponge Axinella polypoides, ATP N-glycosidase (Reintamm et al., 2003). We show here that the Ephydatia muelleri mRNA encoding protein with PNP_UDP_1 (phosphorylase superfamily) signature is the secreted ATP N-glycosidase. The functionality of the protein was established by recombinant expression in Pichia pastoris. In addition to the enzymatic domain, the full-length protein contains the N-terminal cysteine-rich domain belonging to the subfamily SCP_HrTT-1 (cd05559) of the SCP (sperm coating protein) superfamily (cl00133).


Assuntos
Clonagem Molecular , Expressão Gênica , Glicosídeo Hidrolases , Poríferos , Animais , Glicosídeo Hidrolases/biossíntese , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/classificação , Glicosídeo Hidrolases/genética , Pichia/genética , Pichia/metabolismo , Poríferos/enzimologia , Poríferos/genética , Domínios Proteicos , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/classificação , Proteínas Recombinantes/genética
8.
Mol Phylogenet Evol ; 131: 245-253, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30502904

RESUMO

The skeletons of sponges (Phylum Porifera) are comprised of collagen, often embedded with small siliceous structures (spicules) arranged in various forms to provide strength and flexibility. The main proteins responsible for the formation of the spicules in demosponges are the silicateins, which are related to the cathepsins L of other animals. While the silicatein active site, necessary for the formation of biosilica crystals, is characterized by the amino acids SHN, different variants of the silicatein genes have been found, some that retain SHN at the active site and some that don't. As part of an effort to further understand skeleton formation in marine sponges of the order Haplosclerida, a search for all silicatein variants were made in Irish species representing the main clades of this large sponge group. For this task, transcriptomes were sequenced and de novo assembled from Haliclona oculata, H. simulans and H. indistincta. Silicatein genes were identified from these and all available genomes and transcriptomes from Porifera. These were analysed along with all complete silicateins from GenBank. Silicateins were only found in species belonging to the class Demospongiae but excluding Keratosa and Verongimorpha and there was significant duplication and diversity of these genes. Silicateins showing SHN at the active site were polyphyletic. Indeed silicatein sequences were divided into six major clades (CHNI, CHNII, CHNIII, SHNI, SHNII and C/SQN). In those clades where haplosclerids were well represented the silicatein phylogeny reflected previous ribosomal and mitochondrial topologies. The most basal silicatein clade (CHNI) contained sequences only from marine haplosclerids and freshwater sponges while one silicatein from H. indistincta was more related to cathepsins L (outgroup) than to the overall silicatein clade indicating the presence of an old silicatein or an intermediary form. This data could suggest that marine haplosclerids were one of the first groups of extant demosponges to acquire silicatein genes. Furthermore, we suggest that the paucity of spicule types in this group may be due to their single copy of SHNI variants, and the lack of a silintaphin gene.


Assuntos
Osso e Ossos/anatomia & histologia , Evolução Molecular , Poríferos/genética , Animais , Sequência de Bases , Filogenia , Transcriptoma/genética
9.
Sci Rep ; 8(1): 16759, 2018 11 13.
Artigo em Inglês | MEDLINE | ID: mdl-30425281

RESUMO

Silicateins play a key role in biosynthesis of spicules in marine sponges; they are also capable to catalyze formation of amorphous silica in vitro. Silicateins are highly homologous to cathepsins L - a family of cysteine proteases. Molecular mechanisms of silicatein activity remain controversial. Here site-directed mutagenesis was used to clarify significance of selected residues in silica polymerization. A number of mutations were introduced into two sponge proteins - silicatein A1 and cathepsin L from Latrunculia oparinae, as well as into human cathepsin L. First direction was alanine scanning of the proposed catalytic residues. Also, reciprocal mutations were introduced at selected positions that differ between cathepsins L and silicateins. Surprisingly, all the wild type and mutant proteins were capable to catalyze amorphous silica formation with a water-soluble silica precursor tetra(glycerol)orthosilicate. Some mutants possessed several-fold enhanced silica-forming activity and can potentially be useful for nanomaterial synthesis applications. Our findings contradict to the previously suggested mechanisms of silicatein action via a catalytic triad analogous to that in cathepsins L. Instead, a surface-templated biosilification by silicateins and related proteins can be proposed.


Assuntos
Catepsina L/metabolismo , Catepsinas/metabolismo , Glicerol/química , Glicerol/metabolismo , Silicatos/química , Dióxido de Silício/metabolismo , Sequência de Aminoácidos , Animais , Catepsina L/química , Catepsina L/genética , Catepsinas/química , Catepsinas/genética , Humanos , Mutagênese Sítio-Dirigida , Mutação , Polimerização , Poríferos/genética , Dióxido de Silício/química
10.
Zootaxa ; 4382(1): 147-158, 2018 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-29689941

RESUMO

The diversity and phylogenetic relationships of calcareous sponges are still not completely understood. Recent integrative approaches combined analyses of DNA and morphological observations. Such studies resulted in severe taxonomic revisions within the subclass Calcinea and provided the foundation for a phylogenetically meaningful classification. However, several genera are missing from DNA phylogenies and their relationship to other Calcinea remain uncertain. One of these genera is Leuclathrina (family Leucaltidae). We here describe a new species from the Maldives, Leuclathrina translucida sp. nov., which is only the second species of the genus. Like the type species Leuclathrina asconoides, the new species has a leuconoid aquiferous system and lacks a specialized choanoskeleton. Phylogenetic analyses of the partial 28S ribosomal RNA gene revealed that L. translucida sp. nov. is most closely related to a clade containing the exclusively asconoid genera Ascandra, Levinella and Soleneiscus, and to a clade of the likewise asconoid genus Ernstia. No close relationship exists to other members of the polyphyletic family Leucaltidae, or to any other leuconoid Calcinea. Our results suggest that the leuconoid aquiferous system of Leuclathrina evolved independently from that of other calcineans and that the family assignment of the genus has to be reconsidered. Because the latter requires a more comprehensive family level revision among many genera of Calcinea, we propose to formally retain the genus in Leucaltidae for the time being.


Assuntos
Poríferos/genética , Animais , Ilhas do Oceano Índico , Filogenia , RNA Ribossômico 28S , Análise de Sequência de DNA
11.
PLoS One ; 13(3): e0195001, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29596453

RESUMO

Sponge-cyanobacteria associations have attracted research interest from an ecological, evolutionary and biotechnological perspective. Current knowledge is, in its majority, "hidden" in metagenomics research studying the entire microbial communities of sponges, while knowledge on these associations is totally missing for certain geographic areas. In this study, we (a) investigated the occurrence of cyanobacteria in 18 sponge species, several of which are studied for the first time for their cyanobionts, from a previously unexplored eastern Mediterranean ecoregion, the Aegean Sea, (b) isolated sponge-associated cyanobacteria, and characterized them based on a polyphasic (morphological-morphometric and molecular phylogenetic analysis) approach, and (c) conducted a meta-analysis on the global diversity of sponge species hosting cyanobacteria, as well as the diversity of cyanobacterial symbionts. Our research provided new records for nine sponge species, previously unknown for this association, while the isolated cyanobacteria were found to form novel clades within Synechococcus, Leptolyngbyaceae, Pseudanabaenaceae, and Schizotrichaceae, whose taxonomic status requires further investigation; this is the first report of a Schizotrichaceae cyanobacterium associated with sponges. The extensive evaluation of the literature along with the new data from the Aegean Sea raised the number of sponge species known for hosting cyanobacteria to 320 and showed that the cyanobacterial diversity reported from sponges is yet underestimated.


Assuntos
Biodiversidade , Cianobactérias/fisiologia , Poríferos/microbiologia , Animais , Cianobactérias/classificação , Cianobactérias/genética , Região do Mediterrâneo , Filogenia , Poríferos/classificação , Poríferos/genética , RNA Ribossômico 16S/genética , Simbiose
12.
Mar Drugs ; 16(1)2018 Jan 10.
Artigo em Inglês | MEDLINE | ID: mdl-29320389

RESUMO

Recently, it was shown that the majority of genes linked to human diseases, such as cancer genes, evolved in two major evolutionary transitions-the emergence of unicellular organisms and the transition to multicellularity. Therefore, it has been widely accepted that the majority of disease-related genes has already been present in species distantly related to humans. An original way of studying human diseases relies on analyzing genes and proteins that cause a certain disease using model organisms that belong to the evolutionary level at which these genes have emerged. This kind of approach is supported by the simplicity of the genome/proteome, body plan, and physiology of such model organisms. It has been established for quite some time that sponges are an ideal model system for such studies, having a vast variety of genes known to be engaged in sophisticated processes and signalling pathways associated with higher animals. Sponges are considered to be the simplest multicellular animals and have changed little during evolution. Therefore, they provide an insight into the metazoan ancestor genome/proteome features. This review compiles current knowledge of cancer-related genes/proteins in marine sponges.


Assuntos
Neoplasias/genética , Poríferos/genética , Animais , Evolução Molecular , Genoma/genética , Humanos , Proteoma/genética , Transdução de Sinais/genética
13.
Biochimie ; 146: 113-118, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29273295

RESUMO

Deoxynucleoside 5-monophosphate N-glycosidase or DNPH1 (former name Rcl) is a nucleotide hydrolase whose expression in mammalian cancer tissues has been associated with its tumorigenic potential. Therefore, the enzyme has been studied principally in rat and human models. We found the corresponding gene also in the freshwater sponge Ephydatia muelleri, an animal phylogenetically very distant from mammals. Here we report the expression and characterization of the recombinant DNPH1 from E. muelleri. The ancient homolog of mammalian enzyme in a sponge showed the substrate specificity and catalytic efficiency similar to that in higher animals. E. muelleri DNPH1 is inhibited by the purine nucleotides with different numbers of 5'-phosphate groups (n = 1-4). Our results demonstrate that GTP but also dGTP are the best inhibitors, followed by all other purine nucleotides that were tested. Hence, the functioning of DNPH1 in cells where the natural ATP and GTP concentrations are much higher than those of the substrates, dNMPs, should normally be downregulated. We demonstrate for the first time the existence of biologically relevant natural inhibitors of DNPH1, namely ATP and GTP.


Assuntos
N-Glicosil Hidrolases/metabolismo , Filogenia , Poríferos/enzimologia , Sequência de Aminoácidos , Animais , N-Glicosil Hidrolases/química , N-Glicosil Hidrolases/genética , Poríferos/genética
14.
Artif Cells Nanomed Biotechnol ; 46(8): 1646-1658, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29022401

RESUMO

In the present investigation, transgenic tobacco callus cultures and plants overexpressing the silicatein gene LoSilA1 from marine sponge Latrunculia oparinae were obtained and their bioreduction behaviour for the synthesis of silver nanoparticles (AgNPs) was studied. Synthesized nanoparticles were characterized using UV-visible spectroscopy, Fourier transformed infrared spectroscopy (FTIR), X-ray diffraction (XRD), scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), atomic flame electron microscopy (AFM) and nanoparticle tracking analysis (NTA). Our measurements showed that the reduction of silver nitrate produced spherical AgNPs with diameters in the range of 12-80 nm. The results of XRD analysis proved the crystal nature of the obtained AgNPs. FTIR analysis indicated that particles are reduced and stabilized in solution by the capping agent, which is likely to be proteins present in the callus extract. Interestingly, the reduction potential of LoSiLA1-transgenic callus line was increased three-fold compared with the empty vector-transformed calli. The synthesized AgNPs were found to exhibit strong antibacterial activity against Escherichia coli and Agrobacterium rhizogenes. The present study reports the first evidence for using genetic engineering for activation of the reduction potential of plant cells for synthesis of biocidal AgNPs.


Assuntos
Catepsinas , Nanopartículas Metálicas/química , Nicotiana , Células Vegetais , Plantas Geneticamente Modificadas , Poríferos/genética , Prata/química , Animais , Catepsinas/biossíntese , Catepsinas/química , Catepsinas/genética , Células Vegetais/química , Células Vegetais/metabolismo , Plantas Geneticamente Modificadas/química , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Nicotiana/química , Nicotiana/genética , Nicotiana/metabolismo
15.
Protein Sci ; 25(12): 2277-2281, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27616048

RESUMO

Silicateins are proteins found within spicules of siliceous sponges. They are analogs of proteinases cathepsins; they catalyze the transformation of silicic acid esters into biogenic silica (SiO2 ·nH2 O), and are believed to take part in the processes of silicification in marine and freshwater sponges. Earlier studies by Kalyuzhnaya et al. revealed that the Baikal Sponge Lubomirskia baicalensis Pallas, 1773 (L. baicalensis) contains a gene 1988 bp long, which hosts four sequences that encode four mRNAs giving rise to silicateins α1, α2, α3 and α4 (SILα1, SILα2, SILα3, SILα4) whose predicted amino acid sequences are similar to those of the predicted sequences of marine sponge silicateins. However, the sequences of mature silicateins of L. baicalensis remained unknown, since their N-terminal peptides were not identified. We found the sequences of these N-terminal peptides using a combination of the Edman procedure, which involved reaction with phenylisothiocyanate, treatment with trifluoroacetic acid and trypsinolysis followed by treatment with 4-bromine-phenylisothiocyanate performed directly within polyacrylamide gel bands, and subsequent mass spectrometry. The N-terminal peptides are YAESIDWR (SILα1), YVDSIDWR (SILα2 and α4), and YADSLDWR (SILα3). All mature silicateins of L. baicalensis had a length 217 amino acid residues.


Assuntos
Catepsinas , Peptídeos , Poríferos/genética , Análise de Sequência de Proteína/métodos , Animais , Catepsinas/química , Catepsinas/genética , Peptídeos/química , Peptídeos/genética , Poríferos/metabolismo
16.
BMC Genomics ; 17: 158, 2016 Feb 29.
Artigo em Inglês | MEDLINE | ID: mdl-26926518

RESUMO

BACKGROUND: Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. RESULTS: Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. CONCLUSIONS: Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.


Assuntos
Microbiota/genética , Poríferos/genética , Poríferos/microbiologia , Animais , Genoma , Sequenciamento de Nucleotídeos em Larga Escala , Modelos Genéticos , Anotação de Sequência Molecular , Receptores Depuradores/genética , Análise de Sequência de DNA , Simbiose , Transcriptoma
17.
Mol Phylogenet Evol ; 94(Pt A): 327-45, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26416707

RESUMO

Carnivorous sponges are characterized by their unique method of capturing mesoplanktonic prey coupled with the complete or partial reduction of the aquiferous system characteristic of the phylum Porifera. Current systematics place the vast majority of carnivorous sponges within Cladorhizidae, with certain species assigned to Guitarridae and Esperiopsidae. Morphological characters have not been able to show whether this classification is evolutionary accurate, and whether carnivory has evolved once or in several lineages. In the present paper we present the first comprehensive molecular phylogeny of the carnivorous sponges, interpret these results in conjunction with morphological characters, and propose a revised classification of the group. Molecular phylogenies were inferred using 18S rDNA and a combined dataset of partial 28S rDNA, COI and ALG11 sequences. The results recovered carnivorous sponges as a clade closely related to the families Mycalidae and Guitarridae, showing family Cladorhizidae to be monophyletic and also including carnivorous species currently placed in other families. The genus Lycopodina is resurrected for species currently placed in the paraphyletic subgenus Asbestopluma (Asbestopluma) featuring forceps spicules and lacking sigmas or sigmancistras. The genera Chondrocladia and Cladorhiza are found to be monophyletic. However, results indicate that the subgenus Chondrocladia is polyphyletic with respect to the subgenera Meliiderma and Symmetrocladia. Euchelipluma, formerly Guitarridae, is retained, but transferred to Cladorhizidae. The four known carnivorous species currently in Esperiopsis are transferred to Abyssocladia. Neocladia is a junior homonym and is here renamed Koltunicladia. Our results provide strong evidence in support of the hypothesis that carnivory in sponges has evolved only once. While spicule characters mostly reflect monophyletic groups at the generic level, differences between genera represent evolution within family Cladorhizidae rather than evolution of carnivory in separate lineages. Conflicting spicule characters can be reinterpreted to support the inclusion of all carnivorous sponges within Cladorhizidae, and a carnivorous habit should thus be considered the main diagnostic character in systematic classification.


Assuntos
Carnivoridade , Poríferos/fisiologia , Animais , Evolução Biológica , DNA Ribossômico/genética , Complexo IV da Cadeia de Transporte de Elétrons/genética , Filogenia , Poríferos/classificação , Poríferos/genética , Comportamento Predatório , RNA Ribossômico 18S/genética , RNA Ribossômico 28S/genética
18.
BMC Evol Biol ; 15: 278, 2015 Dec 12.
Artigo em Inglês | MEDLINE | ID: mdl-26653218

RESUMO

BACKGROUND: Self-splicing introns are present in the mitochondria of members of most eukaryotic lineages. They are divided into Group I and Group II introns, according to their secondary structure and splicing mechanism. Being rare in animals, self-splicing introns were only described in a few sponges, cnidarians, placozoans and one annelid species. In sponges, three types of mitochondrial Group I introns were previously described in two demosponge families (Tetillidae, and Aplysinellidae) and in the homoscleromorph family Plakinidae. These three introns differ in their insertion site, secondary structure and in the sequence of the LAGLIDADG gene they encode. Notably, no group II introns have been previously described in sponges. RESULTS: We report here the presence of mitochondrial introns in the cytochrome oxidase subunit 1 (COI) gene of three additional sponge species from three different families: Agelas oroides (Agelasidae, Agelasida), Cymbaxinella (p) verrucosa (Hymerhabdiidae, Agelasida) and Axinella polypoides (Axinellidae, Axinellida). We show, for the first time, that sponges can also harbour Group II introns in their COI gene, whose presence in animals' mitochondria has so far been described in only two phyla, Placozoa and Annelida. Surprisingly, two different Group II introns were discovered in the COI gene of C. verrucosa. Phylogenetic analysis indicates that the Group II introns present in C. verrucosa are related to red algae (Rhodophyta) introns. CONCLUSIONS: The differences found among intron secondary structures and the phylogenetic inferences support the hypothesis that the introns originated from independent horizontal gene transfer events. Our results thus suggest that self-splicing introns are more diverse in the mitochondrial genome of sponges than previously anticipated.


Assuntos
Íntrons , Poríferos/classificação , Poríferos/genética , Animais , Sequência de Bases , Complexo IV da Cadeia de Transporte de Elétrons/genética , Transferência Genética Horizontal , Genoma Mitocondrial , Dados de Sequência Molecular , Filogenia , Splicing de RNA
19.
Oncotarget ; 6(24): 20370-87, 2015 Aug 21.
Artigo em Inglês | MEDLINE | ID: mdl-26284487

RESUMO

The roles of oncogenic miRNAs are widely recognized in many cancers. Inhibition of single miRNA using antagomiR can efficiently knock-down a specific miRNA. However, the effect is transient and often results in subtle phenotype, as there are other miRNAs contribute to tumorigenesis. Here we report a multi-potent miRNA sponge inhibiting multiple miRNAs simultaneously. As a model system, we targeted miR-21, miR-155 and miR-221/222, known as oncogenic miRNAs in multiple tumors including breast and pancreatic cancers. To achieve efficient knockdown, we generated perfect and bulged-matched miRNA binding sites (MBS) and introduced multiple copies of MBS, ranging from one to five, in the multi-potent miRNA sponge. Luciferase reporter assay showed the multi-potent miRNA sponge efficiently inhibited 4 miRNAs in breast and pancreatic cancer cells. Furthermore, a stable and inducible version of the multi-potent miRNA sponge cell line showed the miRNA sponge efficiently reduces the level of 4 target miRNAs and increase target protein level of these oncogenic miRNAs. Finally, we showed the miRNA sponge sensitize cells to cancer drug and attenuate cell migratory activity. Altogether, our study demonstrates the multi-potent miRNA sponge is a useful tool to examine the functional impact of simultaneous inhibition of multiple miRNAs and proposes a therapeutic potential.


Assuntos
Neoplasias da Mama/genética , MicroRNAs/genética , Neoplasias Pancreáticas/genética , Poríferos/genética , Poríferos/metabolismo , Animais , Linhagem Celular Tumoral , Movimento Celular , Proliferação de Células , Feminino , Regulação Neoplásica da Expressão Gênica , Humanos , Transfecção
20.
J Biotechnol ; 208: 28-36, 2015 Aug 20.
Artigo em Inglês | MEDLINE | ID: mdl-26022422

RESUMO

Prolyl 4-hydroxylase (P4H) is a α2ß2 tetramer catalyzing the post-translational hydroxylation of prolines in collagen. Its recombinant production is mainly pursued to realize biotechnological tools able to generate animal contaminant-free hydroxylated collagen. One promising candidate for biomedical applications is the collagen extracted from the marine sponge Chondrosia reniformis, because of its biocompatibility and because is devoid of the health risks associated with bovine and porcine collagens. Here we report on the production and selection, by enzymatic and biomolecular analyses, of a triple transformed Pichia pastoris strain expressing a stable P4H tetramer derived from C. reniformis sponge and a hydroxylated non fibrillar procollagen polypeptide from the same animal. The percentage of recombinant procollagen hydroxylated prolines inside the transformed yeast was of 36.3% analyzed by mass spectrometry indicating that the recombinant enzyme is active on its natural substrate inside the yeast cell host. Furthermore, the recombinant sponge P4H has the ability to hydroxylate its natural substrate in both X and Y positions in the Xaa-Yaa-Gly collagenous triplets. In conclusion this Pichia system seems ideal for high-level production of hydroxylated sponge- or marine-derived collagen polypeptides as well as of conotoxins or other marine proteins of high pharmacological interest needing this particular post-translational modification.


Assuntos
Organismos Aquáticos , Colágeno , Pichia/metabolismo , Poríferos , Prolil Hidroxilases , Animais , Organismos Aquáticos/enzimologia , Organismos Aquáticos/genética , Biotecnologia/métodos , Bovinos , Colágeno/biossíntese , Colágeno/química , Colágeno/genética , Colágeno/isolamento & purificação , Pichia/genética , Poríferos/enzimologia , Poríferos/genética , Prolil Hidroxilases/biossíntese , Prolil Hidroxilases/química , Prolil Hidroxilases/genética , Prolil Hidroxilases/isolamento & purificação , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação
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